Prupe.3G168300_v2.0.a1

DNA damage response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011582
Physical Location & Seq
Forward (+)
18714204 .. 18717971
3768 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G168300.1

Sequence Viewer

Length: 990 bp
ATGGATCTTAACGATCTTAACAAGGTTTGGGAAATCAAACCACTCAAGAAAATTGGGGAAGAGGATGCAAGAGAAATACTTGAGAAGGTGGCAAAACAAGTGCAGCCCATAATGCGAAAACATAATTGGAAAGTCAGAATCCTTTCTGAATTCTGCCCTGCCAATCCAGCTCTTCAGGGGCTCAATGTAGGAGGAGGTGCCGAAGTTAAGCTCAGACTACGGAGGCCAAACAATGAGTGGGATTTCTACCCGTATGAACAGATCCTTGATACAATGCTGCACGAGCTCTGCCACAACGAGTATGGTCCTCATAATGCTGACTTTTACAAACTTTTGGATGAGATCAGAAGGGAATGTGAGGAACTGATGGCTAAAGGGATTACAGGGACTGCGCAAGGATTTGATCTTCCTGGGAAACGTTTGGGTGGTTTCTCTCGTCAACCCCCTCTGTCATCTATTCGTCAGACTGCCTTGGCTGCTGCTGAAAACAGAGCACGGCGTGGAGCTTTACTACCATCAGGACCTAGGCGTTTAGGTGGTGATAGCAACATTAAGGCAGCTTTGAGCCCAATACAAGCTGCTGCTATGGCTGCAGAAAGGAGACTACATGATGATTTATGGTGTGGATCCAAGTCTTTGGAGGGTGGCATTGAAATCCAGGGGAATGTTGGGACTTCTCGAAGGACAGAAGCTTTCACAGTTACTAATGGCATATCTACCCAGACGTCTATTGAGTCGGAGTCAGGTCAGGGAAAAATAGATGATCAAGCAAAGTGGAAATGCAATATGTGCACTTTATTAAATGAGCTGTTGGCGTTGAGATGTTCAGCCTGCGGGACCTTAAAAGAGGATGTGAAGTTTAAGGTTTGGTCTTGCAAATTTTGTACCCTAGACAACAGAGTTGAGCTAGATAGATGCTCAGCTTGCGGAGAATGGAGATACTCGTCCGGCCCTCCTGTCTCTAACCGTGGACCATATGTCGGCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WLM zf-RanBP

Protein Analysis

330

Amino Acids

36.62

Weight (kDa)

8.4

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 728
Acc16I TGCGCA 1 cut(s) 393
AccB1I GGYRCC 2 cut(s) 197, 983
AciI CCGC 2 cut(s) 834, 927
AclI AACGTT 1 cut(s) 418
AclWI GGATC 4 cut(s) 12, 256, 621, 634
AcsI RAATTY 2 cut(s) 149, 878
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 725
AdeI CACNNNGTG 1 cut(s) 500
AfaI GTAC 1 cut(s) 886
AfiI CCNNNNNNNGG 1 cut(s) 980
AgsI TTSAA 1 cut(s) 653
AhdI GACNNNNNGTC 1 cut(s) 977
AjnI CCWGG 2 cut(s) 409, 657
AjuI GAANNNNNNNTTGG 2 cut(s) 109, 141
Alw21I GWGCWC 3 cut(s) 288, 496, 794
Alw26I GTCTC 2 cut(s) 595, 964
Alw44I GTGCAC 1 cut(s) 790
AlwI GGATC 4 cut(s) 12, 256, 621, 634
AlwNI CAGNNNCTG 1 cut(s) 389
AoxI GGCC 2 cut(s) 224, 949
ApaLI GTGCAC 1 cut(s) 790
ApeKI GCWGC 8 cut(s) 103, 277, 476, 479, 557, 578, 581, 590
ApoI RAATTY 2 cut(s) 149, 878
Asp700I GAANNNNTTC 1 cut(s) 142
AspA2I CCTAGG 1 cut(s) 524
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 5 cut(s) 305, 521, 837, 950, 971
AsuHPI GGTGA 1 cut(s) 551
AvaII GGWCC 4 cut(s) 305, 521, 837, 971
AvrII CCTAGG 1 cut(s) 524
BaeGI GKGCMC 1 cut(s) 794
BamHI GGATCC 1 cut(s) 626
BanI GGYRCC 2 cut(s) 197, 983
BanII GRGCYC 3 cut(s) 183, 288, 569
BauI CACGAG 1 cut(s) 281
Bbv12I GWGCWC 3 cut(s) 288, 496, 794
BbvI GCAGC 8 cut(s) 115, 264, 463, 466, 565, 568, 569, 577
BccI CCATC 2 cut(s) 361, 523
BceAI ACGGC 1 cut(s) 512
BciT130I CCWGG 2 cut(s) 411, 659
BclI TGATCA 1 cut(s) 763
BcoDI GTCTC 2 cut(s) 595, 964
BfaI CTAG 3 cut(s) 525, 890, 908
BfmI CTRYAG 1 cut(s) 591
BisI GCNGC 8 cut(s) 104, 278, 477, 480, 558, 579, 582, 591
BlnI CCTAGG 1 cut(s) 524
BlpI GCTNAGC 1 cut(s) 919
BlsI GCNGC 8 cut(s) 105, 279, 478, 481, 559, 580, 583, 592
Bme1390I CCNGG 2 cut(s) 411, 659
Bme18I GGWCC 4 cut(s) 305, 521, 837, 971
BmeRI GACNNNNNGTC 1 cut(s) 977
BmgT120I GGNCC 5 cut(s) 305, 521, 837, 950, 971
BmiI GGNNCC 4 cut(s) 199, 628, 838, 985
BmrFI CCNGG 2 cut(s) 411, 659
BmsI GCATC 2 cut(s) 55, 905
Bpu1102I GCTNAGC 1 cut(s) 919
BpuEI CTTGAG 2 cut(s) 29, 101
BsaHI GRCGYC 1 cut(s) 725
BsaJI CCNNGG 5 cut(s) 410, 471, 524, 658, 967
Bsc4I CCNNNNNNNGG 1 cut(s) 980
BseBI CCWGG 2 cut(s) 411, 659
BseDI CCNNGG 5 cut(s) 410, 471, 524, 658, 967
BseGI GGATG 3 cut(s) 70, 343, 856
BseLI CCNNNNNNNGG 1 cut(s) 980
BseMII CTCAG 2 cut(s) 226, 933
BseRI GAGGAG 1 cut(s) 207
BseSI GKGCMC 1 cut(s) 794
BseXI GCAGC 8 cut(s) 115, 264, 463, 466, 565, 568, 569, 577
BsgI GTGCAG 2 cut(s) 122, 263
BshFI GGCC 2 cut(s) 226, 951
BshNI GGYRCC 2 cut(s) 197, 983
BsiHKAI GWGCWC 3 cut(s) 288, 496, 794
BsiSI CCGG 1 cut(s) 948
BslFI GGGAC 3 cut(s) 400, 685, 850
BslI CCNNNNNNNGG 1 cut(s) 980
BsmAI GTCTC 2 cut(s) 595, 964
BsmFI GGGAC 3 cut(s) 400, 685, 850
BsnI GGCC 2 cut(s) 226, 951
Bsp1286I GDGCHC 5 cut(s) 183, 288, 496, 569, 794
Bsp143I GATC 7 cut(s) 4, 13, 261, 342, 403, 626, 763
Bsp1720I GCTNAGC 1 cut(s) 919
BspACI CCGC 2 cut(s) 834, 927
BspANI GGCC 2 cut(s) 226, 951
BspCNI CTCAG 2 cut(s) 225, 932
BspLI GGNNCC 4 cut(s) 199, 628, 838, 985
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 4 cut(s) 12, 256, 621, 634
BspQI GCTCTTC 1 cut(s) 177
BspT107I GGYRCC 2 cut(s) 197, 983
BssECI CCNNGG 5 cut(s) 410, 471, 524, 658, 967
BssMI GATC 7 cut(s) 4, 13, 261, 342, 403, 626, 763
BssNI GRCGYC 1 cut(s) 725
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 2 cut(s) 471, 524
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 411, 659
Bst4CI ACNGT 2 cut(s) 700, 968
Bst6I CTCTTC 2 cut(s) 54, 177
BstACI GRCGYC 1 cut(s) 725
BstAPI GCANNNNNTGC 1 cut(s) 789
BstC8I GCNNGC 2 cut(s) 832, 925
BstDEI CTNAG 2 cut(s) 212, 919
BstDSI CCRYGG 1 cut(s) 967
BstF5I GGATG 3 cut(s) 70, 343, 856
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 7 cut(s) 7, 16, 264, 345, 406, 629, 766
BstMAI GTCTC 2 cut(s) 595, 964
BstMBI GATC 7 cut(s) 4, 13, 261, 342, 403, 626, 763
BstMWI GCNNNNNNNGC 8 cut(s) 112, 167, 283, 476, 587, 590, 789, 924
BstNI CCWGG 2 cut(s) 411, 659
BstSCI CCNGG 2 cut(s) 409, 657
BstSFI CTRYAG 1 cut(s) 591
BstSLI GKGCMC 1 cut(s) 794
BstV1I GCAGC 8 cut(s) 115, 264, 463, 466, 565, 568, 569, 577
BstX2I RGATCY 3 cut(s) 4, 261, 626
BstXI CCANNNNNNTGG 1 cut(s) 637
BstYI RGATCY 3 cut(s) 4, 261, 626
BsuRI GGCC 2 cut(s) 226, 951
BtgI CCRYGG 1 cut(s) 967
BtsCI GGATG 3 cut(s) 70, 343, 856
Cac8I GCNNGC 2 cut(s) 832, 925
CaiI CAGNNNCTG 1 cut(s) 389
CfoI GCGC 1 cut(s) 394
Cfr13I GGNCC 5 cut(s) 305, 521, 837, 950, 971
Csp6I GTAC 1 cut(s) 885
CspCI CAANNNNNGTGG 2 cut(s) 755, 790
CviAII CATG 1 cut(s) 608
CviQI GTAC 1 cut(s) 885
DdeI CTNAG 2 cut(s) 212, 919
DpnI GATC 7 cut(s) 6, 15, 263, 344, 405, 628, 765
DpnII GATC 7 cut(s) 4, 13, 261, 342, 403, 626, 763
DraIII CACNNNGTG 1 cut(s) 500
DriI GACNNNNNGTC 1 cut(s) 977
Eam1104I CTCTTC 2 cut(s) 54, 177
Eam1105I GACNNNNNGTC 1 cut(s) 977
EarI CTCTTC 2 cut(s) 54, 177
Ecl136II GAGCTC 1 cut(s) 286
Eco130I CCWWGG 2 cut(s) 471, 524
Eco24I GRGCYC 3 cut(s) 183, 288, 569
Eco47I GGWCC 4 cut(s) 305, 521, 837, 971
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 286
EcoO109I RGGNCCY 2 cut(s) 521, 837
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 2 cut(s) 409, 657
EcoT14I CCWWGG 2 cut(s) 471, 524
EcoT38I GRGCYC 3 cut(s) 183, 288, 569
ErhI CCWWGG 2 cut(s) 471, 524
FaeI CATG 1 cut(s) 611
FaqI GGGAC 3 cut(s) 400, 685, 850
FatI CATG 1 cut(s) 607
FauI CCCGC 1 cut(s) 827
FauNDI CATATG 1 cut(s) 976
FbaI TGATCA 1 cut(s) 763
Fnu4HI GCNGC 8 cut(s) 104, 278, 477, 480, 558, 579, 582, 591
FokI GGATG 3 cut(s) 77, 350, 863
FriOI GRGCYC 3 cut(s) 183, 288, 569
Fsp4HI GCNGC 8 cut(s) 104, 278, 477, 480, 558, 579, 582, 591
FspBI CTAG 3 cut(s) 525, 890, 908
FspI TGCGCA 1 cut(s) 393
GlaI GCGC 1 cut(s) 393
GluI GCNGC 8 cut(s) 104, 278, 477, 480, 558, 579, 582, 591
HaeIII GGCC 2 cut(s) 226, 951
HapII CCGG 1 cut(s) 948
HhaI GCGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 725
Hin1II CATG 1 cut(s) 611
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HincII GTYRAC 1 cut(s) 440
HindII GTYRAC 1 cut(s) 440
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 3 cut(s) 138, 734, 740
HpaII CCGG 1 cut(s) 948
HphI GGTGA 1 cut(s) 551
Hpy166II GTNNAC 3 cut(s) 440, 792, 971
Hpy188I TCNGA 6 cut(s) 137, 148, 215, 347, 465, 739
Hpy188III TCNNGA 3 cut(s) 46, 519, 678
Hpy8I GTNNAC 3 cut(s) 440, 792, 971
HpyAV CCTTC 3 cut(s) 79, 342, 675
HpyCH4III ACNGT 2 cut(s) 700, 968
HpyCH4IV ACGT 2 cut(s) 418, 725
HpyCH4V TGCA 7 cut(s) 68, 103, 280, 593, 783, 792, 876
HpyF10VI GCNNNNNNNGC 8 cut(s) 112, 167, 283, 476, 587, 590, 789, 924
HpyF3I CTNAG 2 cut(s) 212, 919
HpySE526I ACGT 2 cut(s) 418, 725
Hsp92I GRCGYC 1 cut(s) 725
Hsp92II CATG 1 cut(s) 611
HspAI GCGC 1 cut(s) 392
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 7 cut(s) 4, 13, 261, 342, 403, 626, 763
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 503
Lsp1109I GCAGC 8 cut(s) 115, 264, 463, 466, 565, 568, 569, 577
LweI GCATC 2 cut(s) 55, 905
MaeI CTAG 3 cut(s) 525, 890, 908
MaeII ACGT 2 cut(s) 418, 725
MaeIII GTNAC 1 cut(s) 700
MalI GATC 7 cut(s) 6, 15, 263, 344, 405, 628, 765
MboI GATC 7 cut(s) 4, 13, 261, 342, 403, 626, 763
MboII GAAGA 3 cut(s) 71, 164, 398
MflI RGATCY 3 cut(s) 4, 261, 626
MhlI GDGCHC 5 cut(s) 183, 288, 496, 569, 794
MluCI AATT 4 cut(s) 51, 124, 149, 878
MlyI GAGTC 2 cut(s) 743, 749
MmeI TCCRAC 1 cut(s) 717
MroXI GAANNNNTTC 1 cut(s) 142
MseI TTAA 7 cut(s) 9, 18, 207, 552, 800, 842, 861
MspI CCGG 1 cut(s) 948
MspR9I CCNGG 2 cut(s) 411, 659
MvaI CCWGG 2 cut(s) 411, 659
MwoI GCNNNNNNNGC 8 cut(s) 112, 167, 283, 476, 587, 590, 789, 924
NdeI CATATG 1 cut(s) 976
NdeII GATC 7 cut(s) 4, 13, 261, 342, 403, 626, 763
NlaIII CATG 1 cut(s) 611
NlaIV GGNNCC 4 cut(s) 199, 628, 838, 985
NsbI TGCGCA 1 cut(s) 393
PciSI GCTCTTC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 8 cut(s) 105, 279, 478, 481, 559, 580, 583, 592
PleI GAGTC 2 cut(s) 742, 748
PpsI GAGTC 2 cut(s) 742, 748
PpuMI RGGWCCY 2 cut(s) 521, 837
Psp124BI GAGCTC 1 cut(s) 288
Psp1406I AACGTT 1 cut(s) 418
Psp5II RGGWCCY 2 cut(s) 521, 837
Psp6I CCWGG 2 cut(s) 409, 657
PspGI CCWGG 2 cut(s) 409, 657
PspN4I GGNNCC 4 cut(s) 199, 628, 838, 985
PspPI GGNCC 5 cut(s) 305, 521, 837, 950, 971
PspPPI RGGWCCY 2 cut(s) 521, 837
PstI CTGCAG 1 cut(s) 595
PstNI CAGNNNCTG 1 cut(s) 389
PsuI RGATCY 3 cut(s) 4, 261, 626
RsaI GTAC 1 cut(s) 886
RsaNI GTAC 1 cut(s) 885
SacI GAGCTC 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 7 cut(s) 9, 18, 207, 552, 800, 842, 861
SatI GCNGC 8 cut(s) 104, 278, 477, 480, 558, 579, 582, 591
Sau3AI GATC 7 cut(s) 4, 13, 261, 342, 403, 626, 763
Sau96I GGNCC 5 cut(s) 305, 521, 837, 950, 971
SchI GAGTC 2 cut(s) 743, 749
ScrFI CCNGG 2 cut(s) 411, 659
SduI GDGCHC 5 cut(s) 183, 288, 496, 569, 794
SfaNI GCATC 2 cut(s) 55, 905
SfcI CTRYAG 1 cut(s) 591
SinI GGWCC 4 cut(s) 305, 521, 837, 971
SmlI CTYRAG 2 cut(s) 44, 80
SmoI CTYRAG 2 cut(s) 44, 80
Sse9I AATT 4 cut(s) 51, 124, 149, 878
SsiI CCGC 2 cut(s) 834, 927
SspMI CTAG 3 cut(s) 525, 890, 908
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 2 cut(s) 409, 657
StyI CCWWGG 2 cut(s) 471, 524
TaaI ACNGT 2 cut(s) 700, 968
TaiI ACGT 2 cut(s) 421, 728
TaqI TCGA 1 cut(s) 679
TasI AATT 4 cut(s) 51, 124, 149, 878
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 7 cut(s) 9, 18, 207, 552, 800, 842, 861
Tru9I TTAA 7 cut(s) 9, 18, 207, 552, 800, 842, 861
TseI GCWGC 8 cut(s) 103, 277, 476, 479, 557, 578, 581, 590
TspDTI ATGAA 1 cut(s) 270
TspGWI ACGGA 1 cut(s) 235
VneI GTGCAC 1 cut(s) 790
VpaK11BI GGWCC 4 cut(s) 305, 521, 837, 971
XapI RAATTY 2 cut(s) 149, 878
XcmI CCANNNNNNNNNTGG 3 cut(s) 234, 299, 665
XmaJI CCTAGG 1 cut(s) 524
XmnI GAANNNNTTC 1 cut(s) 142
XspI CTAG 3 cut(s) 525, 890, 908
ZraI GACGTC 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.