Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002179.1

Orthogroup ID

OG0011582

Physical Location & Seq

Genomic Coordinates Forward (+)

7507 .. 10481

Gene Structure 2975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002179.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgggtctcaccgccattgatgaagtctctcgtgagcacaaggacctcagagtccatatggatctcaatgatcttaacaaggtttgggaaatcaaaccacttaagaaaattggagaagaggatgcaagaaaaatccttgagagagttgcaaagcaagtgcagcctataatgcgcaagcgtaattggaaagtccgaatcctttctgaattcagtcctgccaacccggctcttcaagggctcaatataggaggaggtgctgaagttaagctcagactgcgaaggccaaacaacgaatgggatttctatccgtatgaacagatcctcgatacaatgctgcacgagctctgccacaacgagcatggtcctcataatgccgacttttacaaccttttggacgagatcagaagggaatgtgaggaactgatgggtaaagggattaccggcactggacaaggatttgatcttcctgggagacgtttgggtggtttctcacgtcaaccccctccatcatctctacgccagactgccttggctgctgctgaaagcagagcacgtcgtggagctctatttccttcaggacctaagcgtttaggtggggatagcaacattaaggctgctttgagcccaatacaagctgctgctatggctgcagaaaggagactacatgatgatctatggtgtgggtcaaagtctttagagggtgacactaatgtccagggtcatgtcggaacttctcaaaagccacaagctttcacagttactgatggaagatctacccaaacttctactcaaccaaagccaggtctggaaaaagtagatgatcaatcgaagtggcaatgtagtacatgcactttactaaatgaggaattggcattgacatgtgcagcctgcgcgactttaaaagataacaccaagtttaaggtttggtcttgcaaattttgtacattagaaaacagagttggggtagaaagatgcttagcttgtggagaatggagatactcatatggtcctcctgtctccaatcgcggaccttatgttggcacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WLM zf-RanBP

Protein Analysis

348

Amino Acids

38.8

Weight (kDa)

8.7

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011582)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37480 FvH4_6g37480 FvH4_6g37480 FvH4_6g37480 FvH4_6g37480
malus_domestica	MD09G1157700.v1.1
prunus_persica	Prupe.3G168300_v2.0.a1 Prupe.3G168300_v2.0.a1
pyrus_communis	pycom09g07630
rosa_chinensis	RchiOBHm_Chr2g0150321
rosa_laevigata	RLG00000020487
rosa_multiflora	Rmu_sc0002179.1_g000002 Rmu_sc0042700.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097290
rosa_rugosa	Rorug02G0420500
rosa_samantha	Rh2AG479500 Rh2BG491800 Rh2CG465800 Rh2DG500600
rosa_wichuraiana	Rw2G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	50, 710
Acc16I	TGCGCA	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	1040
AccII	CGCG	2 cut(s)	893, 1026
AciI	CCGC	2 cut(s)	12, 1026
AclWI	GGATC	2 cut(s)	69, 313
AcsI	RAATTY	2 cut(s)	206, 935
AcuI	CTGAAG	2 cut(s)	279, 558
AdeI	CACNNNGTG	1 cut(s)	557
AfaI	GTAC	2 cut(s)	844, 943
AfiI	CCNNNNNNNGG	2 cut(s)	800, 1037
AflII	CTTAAG	1 cut(s)	101
AflIII	ACRYGT	1 cut(s)	878
AgsI	TTSAA	1 cut(s)	233
AjiI	CACGTC	2 cut(s)	494, 554
AjnI	CCWGG	3 cut(s)	466, 714, 799
AjuI	GAANNNNNNNTTGG	2 cut(s)	942, 974
AluBI	AGCT	6 cut(s)	268, 343, 563, 635, 749, 980
AluI	AGCT	6 cut(s)	268, 343, 563, 635, 749, 980
Alw21I	GWGCWC	4 cut(s)	39, 345, 553, 565
Alw26I	GTCTC	5 cut(s)	11, 31, 466, 652, 1021
AlwI	GGATC	2 cut(s)	69, 313
AlwNI	CAGNNNCTG	1 cut(s)	761
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	9 cut(s)	160, 334, 533, 536, 614, 635, 638, 647, 884
ApoI	RAATTY	2 cut(s)	206, 935
Asp700I	GAANNNNTTC	1 cut(s)	199
AspLEI	GCGC	2 cut(s)	174, 893
AspS9I	GGNCC	5 cut(s)	43, 362, 578, 1007, 1028
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	713
AvaII	GGWCC	5 cut(s)	43, 362, 578, 1007, 1028
BanI	GGYRCC	1 cut(s)	1040
BanII	GRGCYC	4 cut(s)	240, 345, 565, 626
BauI	CACGAG	2 cut(s)	30, 338
Bbv12I	GWGCWC	4 cut(s)	39, 345, 553, 565
BbvI	GCAGC	9 cut(s)	172, 321, 520, 523, 601, 622, 625, 634, 896
BccI	CCATC	3 cut(s)	418, 514, 758
BciT130I	CCWGG	3 cut(s)	468, 716, 801
BclI	TGATCA	1 cut(s)	820
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	5 cut(s)	11, 31, 466, 652, 1021
BfmI	CTRYAG	1 cut(s)	648
BfrI	CTTAAG	1 cut(s)	101
BglI	GCCNNNNNGGC	1 cut(s)	224
BglII	AGATCT	1 cut(s)	770
BisI	GCNGC	9 cut(s)	161, 335, 534, 537, 615, 636, 639, 648, 885
BlpI	GCTNAGC	1 cut(s)	976
BlsI	GCNGC	9 cut(s)	162, 336, 535, 538, 616, 637, 640, 649, 886
Bme1390I	CCNGG	4 cut(s)	224, 468, 716, 801
Bme18I	GGWCC	5 cut(s)	43, 362, 578, 1007, 1028
BmgBI	CACGTC	2 cut(s)	494, 554
BmgT120I	GGNCC	5 cut(s)	43, 362, 578, 1007, 1028
BmiI	GGNNCC	1 cut(s)	1042
BmrFI	CCNGG	4 cut(s)	224, 468, 716, 801
BmsI	GCATC	2 cut(s)	112, 962
Bpu10I	CCTNAGC	1 cut(s)	582
Bpu1102I	GCTNAGC	1 cut(s)	976
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	467, 528, 715
Bsc4I	CCNNNNNNNGG	2 cut(s)	800, 1037
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	451
Bse3DI	GCAATG	1 cut(s)	842
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	3 cut(s)	468, 716, 801
BseDI	CCNNGG	3 cut(s)	467, 528, 715
BseGI	GGATG	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	800, 1037
BseMI	GCAATG	1 cut(s)	842
BseMII	CTCAG	2 cut(s)	61, 283
BseNI	ACTGG	1 cut(s)	451
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	9 cut(s)	172, 321, 520, 523, 601, 622, 625, 634, 896
BsgI	GTGCAG	3 cut(s)	179, 320, 903
Bsh1236I	CGCG	2 cut(s)	893, 1026
BshFI	GGCC	1 cut(s)	283
BshNI	GGYRCC	1 cut(s)	1040
BsiHKAI	GWGCWC	4 cut(s)	39, 345, 553, 565
BsiSI	CCGG	2 cut(s)	224, 441
BslI	CCNNNNNNNGG	2 cut(s)	800, 1037
BsmAI	GTCTC	5 cut(s)	11, 31, 466, 652, 1021
BsmBI	CGTCTC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	283
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	6 cut(s)	39, 240, 345, 553, 565, 626
Bsp1407I	TGTACA	1 cut(s)	941
Bsp143I	GATC	8 cut(s)	61, 70, 318, 399, 460, 670, 770, 820
Bsp1720I	GCTNAGC	1 cut(s)	976
BspACI	CCGC	2 cut(s)	12, 1026
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	2 cut(s)	60, 282
BspFNI	CGCG	2 cut(s)	893, 1026
BspLI	GGNNCC	1 cut(s)	1042
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	2 cut(s)	69, 313
BspQI	GCTCTTC	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	1040
BspTI	CTTAAG	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	842
BsrFI	RCCGGY	1 cut(s)	440
BsrGI	TGTACA	1 cut(s)	941
BsrI	ACTGG	1 cut(s)	451
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	3 cut(s)	467, 528, 715
BssMI	GATC	8 cut(s)	61, 70, 318, 399, 460, 670, 770, 820
BssSI	CACGAG	2 cut(s)	30, 338
BssT1I	CCWWGG	1 cut(s)	528
Bst2BI	CACGAG	2 cut(s)	30, 338
Bst2UI	CCWGG	3 cut(s)	468, 716, 801
Bst4CI	ACNGT	1 cut(s)	757
Bst6I	CTCTTC	2 cut(s)	111, 234
BstAFI	CTTAAG	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	941
BstC8I	GCNNGC	2 cut(s)	176, 889
BstDEI	CTNAG	4 cut(s)	47, 269, 582, 976
BstF5I	GGATG	1 cut(s)	127
BstFNI	CGCG	2 cut(s)	893, 1026
BstHHI	GCGC	2 cut(s)	174, 893
BstKTI	GATC	8 cut(s)	64, 73, 321, 402, 463, 673, 773, 823
BstMAI	GTCTC	5 cut(s)	11, 31, 466, 652, 1021
BstMBI	GATC	8 cut(s)	61, 70, 318, 399, 460, 670, 770, 820
BstMWI	GCNNNNNNNGC	9 cut(s)	160, 169, 224, 274, 340, 533, 644, 647, 890
BstNI	CCWGG	3 cut(s)	468, 716, 801
BstNSI	RCATGY	2 cut(s)	849, 882
BstSCI	CCNGG	4 cut(s)	222, 466, 714, 799
BstSFI	CTRYAG	1 cut(s)	648
BstUI	CGCG	2 cut(s)	893, 1026
BstV1I	GCAGC	9 cut(s)	172, 321, 520, 523, 601, 622, 625, 634, 896
BstX2I	RGATCY	3 cut(s)	61, 318, 770
BstYI	RGATCY	3 cut(s)	61, 318, 770
BsuRI	GGCC	1 cut(s)	283
BtrI	CACGTC	2 cut(s)	494, 554
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	2 cut(s)	176, 889
CaiI	CAGNNNCTG	1 cut(s)	761
CfoI	GCGC	2 cut(s)	174, 893
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	5 cut(s)	43, 362, 578, 1007, 1028
Csp6I	GTAC	2 cut(s)	843, 942
CspCI	CAANNNNNGTGG	2 cut(s)	812, 847
CviAII	CATG	5 cut(s)	359, 665, 722, 846, 879
CviQI	GTAC	2 cut(s)	843, 942
DdeI	CTNAG	4 cut(s)	47, 269, 582, 976
DpnI	GATC	8 cut(s)	63, 72, 320, 401, 462, 672, 772, 822
DpnII	GATC	8 cut(s)	61, 70, 318, 399, 460, 670, 770, 820
DraI	TTTAAA	1 cut(s)	900
DraIII	CACNNNGTG	1 cut(s)	557
DrdI	GACNNNNNNGTC	2 cut(s)	50, 710
DseDI	GACNNNNNNGTC	2 cut(s)	50, 710
Eam1104I	CTCTTC	2 cut(s)	111, 234
EarI	CTCTTC	2 cut(s)	111, 234
Ecl136II	GAGCTC	2 cut(s)	343, 563
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	4 cut(s)	240, 345, 565, 626
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	5 cut(s)	43, 362, 578, 1007, 1028
Eco53kI	GAGCTC	2 cut(s)	343, 563
Eco57I	CTGAAG	2 cut(s)	279, 558
EcoICRI	GAGCTC	2 cut(s)	343, 563
EcoO109I	RGGNCCY	2 cut(s)	43, 578
EcoRI	GAATTC	1 cut(s)	206
EcoRII	CCWGG	3 cut(s)	466, 714, 799
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	4 cut(s)	240, 345, 565, 626
ErhI	CCWWGG	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	466
FaeI	CATG	5 cut(s)	362, 668, 725, 849, 882
FatI	CATG	5 cut(s)	358, 664, 721, 845, 878
FauNDI	CATATG	2 cut(s)	57, 1003
FbaI	TGATCA	1 cut(s)	820
Fnu4HI	GCNGC	9 cut(s)	161, 335, 534, 537, 615, 636, 639, 648, 885
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	4 cut(s)	240, 345, 565, 626
Fsp4HI	GCNGC	9 cut(s)	161, 335, 534, 537, 615, 636, 639, 648, 885
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	2 cut(s)	173, 892
GluI	GCNGC	9 cut(s)	161, 335, 534, 537, 615, 636, 639, 648, 885
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	2 cut(s)	224, 441
HhaI	GCGC	2 cut(s)	174, 893
Hin1II	CATG	5 cut(s)	362, 668, 725, 849, 882
Hin6I	GCGC	2 cut(s)	172, 891
HinP1I	GCGC	2 cut(s)	172, 891
HincII	GTYRAC	1 cut(s)	497
HindII	GTYRAC	1 cut(s)	497
HindIII	AAGCTT	1 cut(s)	747
HinfI	GANTC	2 cut(s)	51, 195
HpaII	CCGG	2 cut(s)	224, 441
HphI	GGTGA	1 cut(s)	713
Hpy166II	GTNNAC	1 cut(s)	497
Hpy188I	TCNGA	6 cut(s)	50, 194, 205, 272, 404, 728
Hpy188III	TCNNGA	3 cut(s)	32, 576, 806
Hpy8I	GTNNAC	1 cut(s)	497
Hpy99I	CGWCG	1 cut(s)	558
HpyAV	CCTTC	3 cut(s)	273, 399, 582
HpyCH4III	ACNGT	1 cut(s)	757
HpyCH4IV	ACGT	3 cut(s)	475, 493, 553
HpyCH4V	TGCA	8 cut(s)	125, 149, 160, 337, 650, 849, 884, 933
HpyF10VI	GCNNNNNNNGC	9 cut(s)	160, 169, 224, 274, 340, 533, 644, 647, 890
HpyF3I	CTNAG	4 cut(s)	47, 269, 582, 976
HpySE526I	ACGT	3 cut(s)	475, 493, 553
Hsp92II	CATG	5 cut(s)	362, 668, 725, 849, 882
HspAI	GCGC	2 cut(s)	172, 891
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	8 cut(s)	61, 70, 318, 399, 460, 670, 770, 820
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	560
Lsp1109I	GCAGC	9 cut(s)	172, 321, 520, 523, 601, 622, 625, 634, 896
LweI	GCATC	2 cut(s)	112, 962
MaeII	ACGT	3 cut(s)	475, 493, 553
MaeIII	GTNAC	2 cut(s)	701, 757
MalI	GATC	8 cut(s)	63, 72, 320, 401, 462, 672, 772, 822
MboI	GATC	8 cut(s)	61, 70, 318, 399, 460, 670, 770, 820
MboII	GAAGA	4 cut(s)	128, 221, 455, 780
MflI	RGATCY	3 cut(s)	61, 318, 770
MhlI	GDGCHC	6 cut(s)	39, 240, 345, 553, 565, 626
MluCI	AATT	5 cut(s)	108, 181, 206, 866, 935
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	1 cut(s)	706
MroXI	GAANNNNTTC	1 cut(s)	199
MseI	TTAA	6 cut(s)	75, 102, 264, 609, 899, 918
MslI	CAYNNNNRTG	1 cut(s)	877
MspCI	CTTAAG	1 cut(s)	101
MspI	CCGG	2 cut(s)	224, 441
MspR9I	CCNGG	4 cut(s)	224, 468, 716, 801
MvaI	CCWGG	3 cut(s)	468, 716, 801
MvnI	CGCG	2 cut(s)	893, 1026
MwoI	GCNNNNNNNGC	9 cut(s)	160, 169, 224, 274, 340, 533, 644, 647, 890
NciI	CCSGG	1 cut(s)	224
NdeI	CATATG	2 cut(s)	57, 1003
NdeII	GATC	8 cut(s)	61, 70, 318, 399, 460, 670, 770, 820
NlaIII	CATG	5 cut(s)	362, 668, 725, 849, 882
NlaIV	GGNNCC	1 cut(s)	1042
NmuCI	GTSAC	1 cut(s)	701
NsbI	TGCGCA	1 cut(s)	173
NspI	RCATGY	2 cut(s)	849, 882
PciI	ACATGT	1 cut(s)	878
PciSI	GCTCTTC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	195
PkrI	GCNGC	9 cut(s)	162, 336, 535, 538, 616, 637, 640, 649, 886
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PpuMI	RGGWCCY	2 cut(s)	43, 578
PscI	ACATGT	1 cut(s)	878
Psp124BI	GAGCTC	2 cut(s)	345, 565
Psp5II	RGGWCCY	2 cut(s)	43, 578
Psp6I	CCWGG	3 cut(s)	466, 714, 799
PspGI	CCWGG	3 cut(s)	466, 714, 799
PspN4I	GGNNCC	1 cut(s)	1042
PspPI	GGNCC	5 cut(s)	43, 362, 578, 1007, 1028
PspPPI	RGGWCCY	2 cut(s)	43, 578
PstI	CTGCAG	1 cut(s)	652
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	3 cut(s)	61, 318, 770
RsaI	GTAC	2 cut(s)	844, 943
RsaNI	GTAC	2 cut(s)	843, 942
RseI	CAYNNNNRTG	1 cut(s)	877
SacI	GAGCTC	2 cut(s)	345, 565
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	6 cut(s)	75, 102, 264, 609, 899, 918
SatI	GCNGC	9 cut(s)	161, 335, 534, 537, 615, 636, 639, 648, 885
Sau3AI	GATC	8 cut(s)	61, 70, 318, 399, 460, 670, 770, 820
Sau96I	GGNCC	5 cut(s)	43, 362, 578, 1007, 1028
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	4 cut(s)	224, 468, 716, 801
SduI	GDGCHC	6 cut(s)	39, 240, 345, 553, 565, 626
SfaNI	GCATC	2 cut(s)	112, 962
SfcI	CTRYAG	1 cut(s)	648
SinI	GGWCC	5 cut(s)	43, 362, 578, 1007, 1028
SmiMI	CAYNNNNRTG	1 cut(s)	877
SmlI	CTYRAG	2 cut(s)	101, 137
SmoI	CTYRAG	2 cut(s)	101, 137
Sse9I	AATT	5 cut(s)	108, 181, 206, 866, 935
SsiI	CCGC	2 cut(s)	12, 1026
SstI	GAGCTC	2 cut(s)	345, 565
StyD4I	CCNGG	4 cut(s)	222, 466, 714, 799
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	1 cut(s)	757
TaiI	ACGT	3 cut(s)	478, 496, 556
TaqI	TCGA	2 cut(s)	324, 827
TasI	AATT	5 cut(s)	108, 181, 206, 866, 935
TatI	WGTACW	2 cut(s)	842, 941
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	6 cut(s)	75, 102, 264, 609, 899, 918
Tru9I	TTAA	6 cut(s)	75, 102, 264, 609, 899, 918
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	9 cut(s)	160, 334, 533, 536, 614, 635, 638, 647, 884
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	2 cut(s)	36, 327
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	1 cut(s)	451
Vha464I	CTTAAG	1 cut(s)	101
VpaK11BI	GGWCC	5 cut(s)	43, 362, 578, 1007, 1028
XapI	RAATTY	2 cut(s)	206, 935
XceI	RCATGY	2 cut(s)	849, 882
XcmI	CCANNNNNNNNNTGG	2 cut(s)	291, 356
XmnI	GAANNNNTTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.