Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042700.1

Orthogroup ID

OG0011582

Physical Location & Seq

Genomic Coordinates Reverse (-)

496 .. 2260

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042700.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgctgcacgagctctgccacaacgagcatggtcctcataatgccgacttttacaaccttttggacgagatcagaagggaatgtgaggaactgatgggtaaagggattaccggcactggacaaggatttgatcttcctgggagacgtttgggtggtttctcacgtcaaccccctccatcatctctacgccagactgccttggctgctgctgaaagcagagcacgtcgtggagctctatttccttcaggacctaagcgtttaggtggggatagcaacattaaggctgctttgagcccaatacaagctgctgctatggctgcagaaaggagactacatgatgatctatggtgtgggtcaaagtctttagagggtgacactaatgtccagggtcatgtcggaacttctcaaaagccacaagctttcacagttactgatggaagatctacccaaacttctactcaaccaaagccaggtctggaaaaagtagatgatcaatcgaagtggcaatgtagtacatgcactttactaaatgaggaattggcattgacatgtgcagcctgcgcgactttaaaagataacaccaagtttaaggtttggtcttgcaaattttgtacattagaaaacagagttggggtagaaagatgcttagcttgtggagaatggagatactcatatggtcctcctgtctccaatcgcggaccttatgttggcacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WLM zf-RanBP

Protein Analysis

238

Amino Acids

25.93

Weight (kDa)

8.28

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011582)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37480 FvH4_6g37480 FvH4_6g37480 FvH4_6g37480 FvH4_6g37480
malus_domestica	MD09G1157700.v1.1
prunus_persica	Prupe.3G168300_v2.0.a1 Prupe.3G168300_v2.0.a1
pyrus_communis	pycom09g07630
rosa_chinensis	RchiOBHm_Chr2g0150321
rosa_laevigata	RLG00000020487
rosa_multiflora	Rmu_sc0002179.1_g000002 Rmu_sc0042700.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097290
rosa_rugosa	Rorug02G0420500
rosa_samantha	Rh2AG479500 Rh2BG491800 Rh2CG465800 Rh2DG500600
rosa_wichuraiana	Rw2G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	380
AccB1I	GGYRCC	1 cut(s)	710
AccII	CGCG	2 cut(s)	563, 696
AciI	CCGC	1 cut(s)	696
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	1 cut(s)	228
AdeI	CACNNNGTG	1 cut(s)	227
AfaI	GTAC	2 cut(s)	514, 613
AfiI	CCNNNNNNNGG	2 cut(s)	470, 707
AflIII	ACRYGT	1 cut(s)	548
AjiI	CACGTC	2 cut(s)	164, 224
AjnI	CCWGG	3 cut(s)	136, 384, 469
AjuI	GAANNNNNNNTTGG	2 cut(s)	612, 644
AluBI	AGCT	5 cut(s)	13, 233, 305, 419, 650
AluI	AGCT	5 cut(s)	13, 233, 305, 419, 650
Alw21I	GWGCWC	3 cut(s)	15, 223, 235
Alw26I	GTCTC	3 cut(s)	136, 322, 691
AlwNI	CAGNNNCTG	1 cut(s)	431
ApeKI	GCWGC	8 cut(s)	4, 203, 206, 284, 305, 308, 317, 554
ApoI	RAATTY	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	4 cut(s)	32, 248, 677, 698
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	4 cut(s)	32, 248, 677, 698
BanI	GGYRCC	1 cut(s)	710
BanII	GRGCYC	3 cut(s)	15, 235, 296
BauI	CACGAG	1 cut(s)	8
Bbv12I	GWGCWC	3 cut(s)	15, 223, 235
BbvI	GCAGC	7 cut(s)	190, 193, 271, 292, 295, 304, 566
BccI	CCATC	3 cut(s)	88, 184, 428
BciT130I	CCWGG	3 cut(s)	138, 386, 471
BclI	TGATCA	1 cut(s)	490
BcoDI	GTCTC	3 cut(s)	136, 322, 691
BfmI	CTRYAG	1 cut(s)	318
BglII	AGATCT	1 cut(s)	440
BisI	GCNGC	8 cut(s)	5, 204, 207, 285, 306, 309, 318, 555
BlpI	GCTNAGC	1 cut(s)	646
BlsI	GCNGC	8 cut(s)	6, 205, 208, 286, 307, 310, 319, 556
Bme1390I	CCNGG	3 cut(s)	138, 386, 471
Bme18I	GGWCC	4 cut(s)	32, 248, 677, 698
BmgBI	CACGTC	2 cut(s)	164, 224
BmgT120I	GGNCC	4 cut(s)	32, 248, 677, 698
BmiI	GGNNCC	1 cut(s)	712
BmrFI	CCNGG	3 cut(s)	138, 386, 471
BmsI	GCATC	1 cut(s)	632
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	646
BsaJI	CCNNGG	3 cut(s)	137, 198, 385
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 707
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	512
BseBI	CCWGG	3 cut(s)	138, 386, 471
BseDI	CCNNGG	3 cut(s)	137, 198, 385
BseLI	CCNNNNNNNGG	2 cut(s)	470, 707
BseMI	GCAATG	1 cut(s)	512
BseNI	ACTGG	1 cut(s)	121
BseXI	GCAGC	7 cut(s)	190, 193, 271, 292, 295, 304, 566
BsgI	GTGCAG	1 cut(s)	573
Bsh1236I	CGCG	2 cut(s)	563, 696
BshNI	GGYRCC	1 cut(s)	710
BsiHKAI	GWGCWC	3 cut(s)	15, 223, 235
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	470, 707
BsmAI	GTCTC	3 cut(s)	136, 322, 691
BsmBI	CGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	4 cut(s)	15, 223, 235, 296
Bsp1407I	TGTACA	1 cut(s)	611
Bsp143I	GATC	5 cut(s)	69, 130, 340, 440, 490
Bsp1720I	GCTNAGC	1 cut(s)	646
BspACI	CCGC	1 cut(s)	696
BspFNI	CGCG	2 cut(s)	563, 696
BspLI	GGNNCC	1 cut(s)	712
BspMAI	CTGCAG	1 cut(s)	322
BspT107I	GGYRCC	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	512
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	611
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	137, 198, 385
BssMI	GATC	5 cut(s)	69, 130, 340, 440, 490
BssSI	CACGAG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	198
Bst2BI	CACGAG	1 cut(s)	8
Bst2UI	CCWGG	3 cut(s)	138, 386, 471
Bst4CI	ACNGT	1 cut(s)	427
BstAUI	TGTACA	1 cut(s)	611
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	2 cut(s)	252, 646
BstFNI	CGCG	2 cut(s)	563, 696
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	5 cut(s)	72, 133, 343, 443, 493
BstMAI	GTCTC	3 cut(s)	136, 322, 691
BstMBI	GATC	5 cut(s)	69, 130, 340, 440, 490
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 203, 314, 317, 560
BstNI	CCWGG	3 cut(s)	138, 386, 471
BstNSI	RCATGY	2 cut(s)	519, 552
BstSCI	CCNGG	3 cut(s)	136, 384, 469
BstSFI	CTRYAG	1 cut(s)	318
BstUI	CGCG	2 cut(s)	563, 696
BstV1I	GCAGC	7 cut(s)	190, 193, 271, 292, 295, 304, 566
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BtrI	CACGTC	2 cut(s)	164, 224
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	559
CaiI	CAGNNNCTG	1 cut(s)	431
CfoI	GCGC	1 cut(s)	563
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	4 cut(s)	32, 248, 677, 698
Csp6I	GTAC	2 cut(s)	513, 612
CspCI	CAANNNNNGTGG	2 cut(s)	482, 517
CviAII	CATG	5 cut(s)	29, 335, 392, 516, 549
CviQI	GTAC	2 cut(s)	513, 612
DdeI	CTNAG	2 cut(s)	252, 646
DpnI	GATC	5 cut(s)	71, 132, 342, 442, 492
DpnII	GATC	5 cut(s)	69, 130, 340, 440, 490
DraI	TTTAAA	1 cut(s)	570
DraIII	CACNNNGTG	1 cut(s)	227
DrdI	GACNNNNNNGTC	1 cut(s)	380
DseDI	GACNNNNNNGTC	1 cut(s)	380
Ecl136II	GAGCTC	2 cut(s)	13, 233
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	3 cut(s)	15, 235, 296
Eco47I	GGWCC	4 cut(s)	32, 248, 677, 698
Eco53kI	GAGCTC	2 cut(s)	13, 233
Eco57I	CTGAAG	1 cut(s)	228
EcoICRI	GAGCTC	2 cut(s)	13, 233
EcoO109I	RGGNCCY	1 cut(s)	248
EcoRII	CCWGG	3 cut(s)	136, 384, 469
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	3 cut(s)	15, 235, 296
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	5 cut(s)	32, 338, 395, 519, 552
FatI	CATG	5 cut(s)	28, 334, 391, 515, 548
FauNDI	CATATG	1 cut(s)	673
FbaI	TGATCA	1 cut(s)	490
Fnu4HI	GCNGC	8 cut(s)	5, 204, 207, 285, 306, 309, 318, 555
FriOI	GRGCYC	3 cut(s)	15, 235, 296
Fsp4HI	GCNGC	8 cut(s)	5, 204, 207, 285, 306, 309, 318, 555
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	8 cut(s)	5, 204, 207, 285, 306, 309, 318, 555
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	5 cut(s)	32, 338, 395, 519, 552
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
HindIII	AAGCTT	1 cut(s)	417
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	2 cut(s)	74, 398
Hpy188III	TCNNGA	2 cut(s)	246, 476
Hpy8I	GTNNAC	1 cut(s)	167
Hpy99I	CGWCG	1 cut(s)	228
HpyAV	CCTTC	2 cut(s)	69, 252
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	3 cut(s)	145, 163, 223
HpyCH4V	TGCA	5 cut(s)	7, 320, 519, 554, 603
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 203, 314, 317, 560
HpyF3I	CTNAG	2 cut(s)	252, 646
HpySE526I	ACGT	3 cut(s)	145, 163, 223
Hsp92II	CATG	5 cut(s)	32, 338, 395, 519, 552
HspAI	GCGC	1 cut(s)	561
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	5 cut(s)	69, 130, 340, 440, 490
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	7 cut(s)	190, 193, 271, 292, 295, 304, 566
LweI	GCATC	1 cut(s)	632
MaeII	ACGT	3 cut(s)	145, 163, 223
MaeIII	GTNAC	2 cut(s)	371, 427
MalI	GATC	5 cut(s)	71, 132, 342, 442, 492
MboI	GATC	5 cut(s)	69, 130, 340, 440, 490
MboII	GAAGA	2 cut(s)	125, 450
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	4 cut(s)	15, 223, 235, 296
MluCI	AATT	2 cut(s)	536, 605
MmeI	TCCRAC	1 cut(s)	376
MnlI	CCTC	6 cut(s)	45, 79, 183, 361, 526, 690
MseI	TTAA	3 cut(s)	279, 569, 588
MslI	CAYNNNNRTG	1 cut(s)	547
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	3 cut(s)	138, 386, 471
MvaI	CCWGG	3 cut(s)	138, 386, 471
MvnI	CGCG	2 cut(s)	563, 696
MwoI	GCNNNNNNNGC	5 cut(s)	10, 203, 314, 317, 560
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	5 cut(s)	69, 130, 340, 440, 490
NlaIII	CATG	5 cut(s)	32, 338, 395, 519, 552
NlaIV	GGNNCC	1 cut(s)	712
NmuCI	GTSAC	1 cut(s)	371
NspI	RCATGY	2 cut(s)	519, 552
PciI	ACATGT	1 cut(s)	548
PkrI	GCNGC	8 cut(s)	6, 205, 208, 286, 307, 310, 319, 556
PpuMI	RGGWCCY	1 cut(s)	248
PscI	ACATGT	1 cut(s)	548
Psp124BI	GAGCTC	2 cut(s)	15, 235
Psp5II	RGGWCCY	1 cut(s)	248
Psp6I	CCWGG	3 cut(s)	136, 384, 469
PspGI	CCWGG	3 cut(s)	136, 384, 469
PspN4I	GGNNCC	1 cut(s)	712
PspPI	GGNCC	4 cut(s)	32, 248, 677, 698
PspPPI	RGGWCCY	1 cut(s)	248
PstI	CTGCAG	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	2 cut(s)	514, 613
RsaNI	GTAC	2 cut(s)	513, 612
RseI	CAYNNNNRTG	1 cut(s)	547
SacI	GAGCTC	2 cut(s)	15, 235
SaqAI	TTAA	3 cut(s)	279, 569, 588
SatI	GCNGC	8 cut(s)	5, 204, 207, 285, 306, 309, 318, 555
Sau3AI	GATC	5 cut(s)	69, 130, 340, 440, 490
Sau96I	GGNCC	4 cut(s)	32, 248, 677, 698
ScrFI	CCNGG	3 cut(s)	138, 386, 471
SduI	GDGCHC	4 cut(s)	15, 223, 235, 296
SfaNI	GCATC	1 cut(s)	632
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	4 cut(s)	32, 248, 677, 698
SmiMI	CAYNNNNRTG	1 cut(s)	547
Sse9I	AATT	2 cut(s)	536, 605
SsiI	CCGC	1 cut(s)	696
SstI	GAGCTC	2 cut(s)	15, 235
StyD4I	CCNGG	3 cut(s)	136, 384, 469
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	3 cut(s)	148, 166, 226
TaqI	TCGA	1 cut(s)	497
TasI	AATT	2 cut(s)	536, 605
TatI	WGTACW	2 cut(s)	512, 611
Tru1I	TTAA	3 cut(s)	279, 569, 588
Tru9I	TTAA	3 cut(s)	279, 569, 588
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	8 cut(s)	4, 203, 206, 284, 305, 308, 317, 554
Tsp45I	GTSAC	1 cut(s)	371
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	4 cut(s)	32, 248, 677, 698
XapI	RAATTY	1 cut(s)	605
XceI	RCATGY	2 cut(s)	519, 552
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.