Rw2G039140

DNA damage response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011582
Physical Location & Seq
Forward (+)
64101619 .. 64104302
2684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039140.1

Sequence Viewer

Length: 990 bp
ATGGATCTCAATGATCTTAACAAGGTTTGGGAAATCAAACCACTTAAGAAAATTGGAGAAGAGGATGCAAGAAAAATCCTTGAGAGAGTTGCAAAGCAAGTGCAGCCTATAATGCGCAAGCGTAAATGGAAAGTCCGAATCCTTTCTGAATTCAGTCCTGCCAACCCGGCTCTTCAAGGGCTCAATATAGGAGGAGGTGCTGAAGTTAAGCTCAGACTGCGAAGGCCAAACAACGAATGGGATTTCTATCCGTATGAACAGATCCTTGATACAATGCTGCACGAGCTCTGCCACAACGAGCATGGTCCTCATAATGCCGACTTTTACAACCTTTTGGACGAGATCAGAAGGGAATGTGAGGAACTGATGGGTAAAGGGATTACCGGCACTGGACAAGGATTTGATCTTCCTGGGAGACGTTTGGGTGGTTTCTCACGTCAACCCCCTCCATCATCTCTACGCCAGACTGCCTTGGCTGCTGCTGAAAGCAGAGCACGTCGTGGAGCTCTATTGCCGTCAGGACCTAAGCGTTTAGGTGGGGATAGCAACATTAAGGCTGCTTTGAGCCCAATACAAGCTGCTGCTATGGCTGCAGAAAGGAGACTACATGATGATCTATGGTGTGGGTCAAAGTCTTTAGAGGGTGACACTAATGTCCAGGGTCATGTCGGAACTTCTCAAAAGCCACAAGCTTTCACAGTTACTGATGGAAGATCTACCCAAACTTCTACTCAACCAAAGCCAGGTCCGGAAAAAGTAGATGATCAATCGAAGTGGCAATGTAGTACATGCACTTTACTAAATGAGGAATTGGCATTGACATGTGCAGCCTGCGCGACTTTAAAAGATAACACCAAGTTTAAGGTTTGGTCTTGCAAATTTTGTACATTAGAAAACAGAGTTGGGGTAGAAAGATGCTTAGCTTGTGGAGAATGGAGATACTCATATGGTCCTCCTGTCTCCAATCGCGGACCTTATGTTGGCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WLM zf-RanBP

Protein Analysis

329

Amino Acids

36.57

Weight (kDa)

8.91

Isoelectric Point (pI)

54.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WLM PF08325 8 - 202 5.5e-59 WLM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 653
Acc16I TGCGCA 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 983
AccII CGCG 2 cut(s) 836, 969
AccIII TCCGGA 1 cut(s) 748
AciI CCGC 1 cut(s) 969
AclWI GGATC 2 cut(s) 12, 256
AcsI RAATTY 2 cut(s) 149, 878
AcuI CTGAAG 1 cut(s) 222
AdeI CACNNNGTG 1 cut(s) 500
AfaI GTAC 2 cut(s) 787, 886
AfiI CCNNNNNNNGG 2 cut(s) 743, 980
AflII CTTAAG 1 cut(s) 44
AflIII ACRYGT 1 cut(s) 821
AgsI TTSAA 1 cut(s) 176
AjiI CACGTC 2 cut(s) 437, 497
AjnI CCWGG 3 cut(s) 409, 657, 742
AjuI GAANNNNNNNTTGG 2 cut(s) 885, 917
AluBI AGCT 6 cut(s) 211, 286, 506, 578, 692, 923
AluI AGCT 6 cut(s) 211, 286, 506, 578, 692, 923
Alw21I GWGCWC 3 cut(s) 288, 496, 508
Alw26I GTCTC 3 cut(s) 409, 595, 964
AlwI GGATC 2 cut(s) 12, 256
AlwNI CAGNNNCTG 1 cut(s) 704
Aor13HI TCCGGA 1 cut(s) 748
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 9 cut(s) 103, 277, 476, 479, 557, 578, 581, 590, 827
ApoI RAATTY 2 cut(s) 149, 878
Asp700I GAANNNNTTC 1 cut(s) 142
AspLEI GCGC 2 cut(s) 117, 836
AspS9I GGNCC 5 cut(s) 305, 521, 746, 950, 971
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 656
AvaII GGWCC 5 cut(s) 305, 521, 746, 950, 971
BanI GGYRCC 1 cut(s) 983
BanII GRGCYC 4 cut(s) 183, 288, 508, 569
BauI CACGAG 1 cut(s) 281
Bbv12I GWGCWC 3 cut(s) 288, 496, 508
BbvI GCAGC 9 cut(s) 115, 264, 463, 466, 544, 565, 568, 577, 839
BccI CCATC 3 cut(s) 361, 457, 701
BceAI ACGGC 1 cut(s) 499
BciT130I CCWGG 3 cut(s) 411, 659, 744
BclI TGATCA 1 cut(s) 763
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 3 cut(s) 409, 595, 964
BfmI CTRYAG 1 cut(s) 591
BfrI CTTAAG 1 cut(s) 44
BglI GCCNNNNNGGC 1 cut(s) 167
BglII AGATCT 1 cut(s) 713
BisI GCNGC 9 cut(s) 104, 278, 477, 480, 558, 579, 582, 591, 828
BlpI GCTNAGC 1 cut(s) 919
BlsI GCNGC 9 cut(s) 105, 279, 478, 481, 559, 580, 583, 592, 829
Bme1390I CCNGG 4 cut(s) 167, 411, 659, 744
Bme18I GGWCC 5 cut(s) 305, 521, 746, 950, 971
BmgBI CACGTC 2 cut(s) 437, 497
BmgT120I GGNCC 5 cut(s) 305, 521, 746, 950, 971
BmiI GGNNCC 1 cut(s) 985
BmrFI CCNGG 4 cut(s) 167, 411, 659, 744
BmsI GCATC 2 cut(s) 55, 905
Bpu10I CCTNAGC 1 cut(s) 525
Bpu1102I GCTNAGC 1 cut(s) 919
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 167
BsaBI GATNNNNATC 1 cut(s) 246
BsaJI CCNNGG 3 cut(s) 410, 471, 658
BsaWI WCCGGW 1 cut(s) 748
Bsc4I CCNNNNNNNGG 2 cut(s) 743, 980
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 394
Bse3DI GCAATG 1 cut(s) 785
Bse8I GATNNNNATC 1 cut(s) 246
BseAI TCCGGA 1 cut(s) 748
BseBI CCWGG 3 cut(s) 411, 659, 744
BseDI CCNNGG 3 cut(s) 410, 471, 658
BseGI GGATG 1 cut(s) 70
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 743, 980
BseMI GCAATG 1 cut(s) 785
BseMII CTCAG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 9 cut(s) 115, 264, 463, 466, 544, 565, 568, 577, 839
BsgI GTGCAG 3 cut(s) 122, 263, 846
Bsh1236I CGCG 2 cut(s) 836, 969
BshFI GGCC 1 cut(s) 226
BshNI GGYRCC 1 cut(s) 983
BsiHKAI GWGCWC 3 cut(s) 288, 496, 508
BsiSI CCGG 3 cut(s) 167, 384, 749
BslI CCNNNNNNNGG 2 cut(s) 743, 980
BsmAI GTCTC 3 cut(s) 409, 595, 964
BsmBI CGTCTC 1 cut(s) 409
BsnI GGCC 1 cut(s) 226
Bsp1286I GDGCHC 5 cut(s) 183, 288, 496, 508, 569
Bsp13I TCCGGA 1 cut(s) 748
Bsp1407I TGTACA 1 cut(s) 884
Bsp143I GATC 8 cut(s) 4, 13, 261, 342, 403, 613, 713, 763
Bsp1720I GCTNAGC 1 cut(s) 919
BspACI CCGC 1 cut(s) 969
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 225
BspEI TCCGGA 1 cut(s) 748
BspFNI CGCG 2 cut(s) 836, 969
BspLI GGNNCC 1 cut(s) 985
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 2 cut(s) 12, 256
BspQI GCTCTTC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 983
BspTI CTTAAG 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 785
BsrFI RCCGGY 1 cut(s) 383
BsrGI TGTACA 1 cut(s) 884
BsrI ACTGG 1 cut(s) 394
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 3 cut(s) 410, 471, 658
BssMI GATC 8 cut(s) 4, 13, 261, 342, 403, 613, 713, 763
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 471
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 3 cut(s) 411, 659, 744
Bst4CI ACNGT 1 cut(s) 700
Bst6I CTCTTC 2 cut(s) 54, 177
BstAFI CTTAAG 1 cut(s) 44
BstAUI TGTACA 1 cut(s) 884
BstC8I GCNNGC 2 cut(s) 119, 832
BstDEI CTNAG 3 cut(s) 212, 525, 919
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 2 cut(s) 836, 969
BstHHI GCGC 2 cut(s) 117, 836
BstKTI GATC 8 cut(s) 7, 16, 264, 345, 406, 616, 716, 766
BstMAI GTCTC 3 cut(s) 409, 595, 964
BstMBI GATC 8 cut(s) 4, 13, 261, 342, 403, 613, 713, 763
BstMWI GCNNNNNNNGC 9 cut(s) 103, 112, 167, 217, 283, 476, 587, 590, 833
BstNI CCWGG 3 cut(s) 411, 659, 744
BstNSI RCATGY 2 cut(s) 792, 825
BstSCI CCNGG 4 cut(s) 165, 409, 657, 742
BstSFI CTRYAG 1 cut(s) 591
BstUI CGCG 2 cut(s) 836, 969
BstV1I GCAGC 9 cut(s) 115, 264, 463, 466, 544, 565, 568, 577, 839
BstX2I RGATCY 3 cut(s) 4, 261, 713
BstYI RGATCY 3 cut(s) 4, 261, 713
BsuRI GGCC 1 cut(s) 226
BtrI CACGTC 2 cut(s) 437, 497
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 387
Cac8I GCNNGC 2 cut(s) 119, 832
CaiI CAGNNNCTG 1 cut(s) 704
CfoI GCGC 2 cut(s) 117, 836
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 5 cut(s) 305, 521, 746, 950, 971
Csp6I GTAC 2 cut(s) 786, 885
CspCI CAANNNNNGTGG 2 cut(s) 755, 790
CviAII CATG 5 cut(s) 302, 608, 665, 789, 822
CviQI GTAC 2 cut(s) 786, 885
DdeI CTNAG 3 cut(s) 212, 525, 919
DpnI GATC 8 cut(s) 6, 15, 263, 344, 405, 615, 715, 765
DpnII GATC 8 cut(s) 4, 13, 261, 342, 403, 613, 713, 763
DraI TTTAAA 1 cut(s) 843
DraIII CACNNNGTG 1 cut(s) 500
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
Eam1104I CTCTTC 2 cut(s) 54, 177
EarI CTCTTC 2 cut(s) 54, 177
Ecl136II GAGCTC 2 cut(s) 286, 506
Eco130I CCWWGG 1 cut(s) 471
Eco24I GRGCYC 4 cut(s) 183, 288, 508, 569
Eco47I GGWCC 5 cut(s) 305, 521, 746, 950, 971
Eco53kI GAGCTC 2 cut(s) 286, 506
Eco57I CTGAAG 1 cut(s) 222
EcoICRI GAGCTC 2 cut(s) 286, 506
EcoO109I RGGNCCY 1 cut(s) 521
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 3 cut(s) 409, 657, 742
EcoT14I CCWWGG 1 cut(s) 471
EcoT38I GRGCYC 4 cut(s) 183, 288, 508, 569
ErhI CCWWGG 1 cut(s) 471
Esp3I CGTCTC 1 cut(s) 409
FaeI CATG 5 cut(s) 305, 611, 668, 792, 825
FatI CATG 5 cut(s) 301, 607, 664, 788, 821
FauNDI CATATG 1 cut(s) 946
FbaI TGATCA 1 cut(s) 763
Fnu4HI GCNGC 9 cut(s) 104, 278, 477, 480, 558, 579, 582, 591, 828
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 4 cut(s) 183, 288, 508, 569
Fsp4HI GCNGC 9 cut(s) 104, 278, 477, 480, 558, 579, 582, 591, 828
FspI TGCGCA 1 cut(s) 116
GlaI GCGC 2 cut(s) 116, 835
GluI GCNGC 9 cut(s) 104, 278, 477, 480, 558, 579, 582, 591, 828
HaeIII GGCC 1 cut(s) 226
HapII CCGG 3 cut(s) 167, 384, 749
HhaI GCGC 2 cut(s) 117, 836
Hin1II CATG 5 cut(s) 305, 611, 668, 792, 825
Hin6I GCGC 2 cut(s) 115, 834
HinP1I GCGC 2 cut(s) 115, 834
HincII GTYRAC 1 cut(s) 440
HindII GTYRAC 1 cut(s) 440
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 1 cut(s) 138
HpaII CCGG 3 cut(s) 167, 384, 749
HphI GGTGA 1 cut(s) 656
Hpy166II GTNNAC 1 cut(s) 440
Hpy188I TCNGA 5 cut(s) 137, 148, 215, 347, 671
Hpy188III TCNNGA 2 cut(s) 519, 749
Hpy8I GTNNAC 1 cut(s) 440
Hpy99I CGWCG 1 cut(s) 501
HpyAV CCTTC 2 cut(s) 216, 342
HpyCH4III ACNGT 1 cut(s) 700
HpyCH4IV ACGT 3 cut(s) 418, 436, 496
HpyCH4V TGCA 8 cut(s) 68, 92, 103, 280, 593, 792, 827, 876
HpyF10VI GCNNNNNNNGC 9 cut(s) 103, 112, 167, 217, 283, 476, 587, 590, 833
HpyF3I CTNAG 3 cut(s) 212, 525, 919
HpySE526I ACGT 3 cut(s) 418, 436, 496
Hsp92II CATG 5 cut(s) 305, 611, 668, 792, 825
HspAI GCGC 2 cut(s) 115, 834
Kpn2I TCCGGA 1 cut(s) 748
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 8 cut(s) 4, 13, 261, 342, 403, 613, 713, 763
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 503
Lsp1109I GCAGC 9 cut(s) 115, 264, 463, 466, 544, 565, 568, 577, 839
LweI GCATC 2 cut(s) 55, 905
MaeII ACGT 3 cut(s) 418, 436, 496
MaeIII GTNAC 2 cut(s) 644, 700
MalI GATC 8 cut(s) 6, 15, 263, 344, 405, 615, 715, 765
MboI GATC 8 cut(s) 4, 13, 261, 342, 403, 613, 713, 763
MboII GAAGA 4 cut(s) 71, 164, 398, 723
MflI RGATCY 3 cut(s) 4, 261, 713
MhlI GDGCHC 5 cut(s) 183, 288, 496, 508, 569
MluCI AATT 4 cut(s) 51, 149, 809, 878
MmeI TCCRAC 1 cut(s) 649
MnlI CCTC 9 cut(s) 55, 185, 188, 318, 352, 456, 634, 799, 963
MroI TCCGGA 1 cut(s) 748
MroXI GAANNNNTTC 1 cut(s) 142
MseI TTAA 6 cut(s) 18, 45, 207, 552, 842, 861
MslI CAYNNNNRTG 1 cut(s) 820
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 3 cut(s) 167, 384, 749
MspR9I CCNGG 4 cut(s) 167, 411, 659, 744
MvaI CCWGG 3 cut(s) 411, 659, 744
MvnI CGCG 2 cut(s) 836, 969
MwoI GCNNNNNNNGC 9 cut(s) 103, 112, 167, 217, 283, 476, 587, 590, 833
NciI CCSGG 1 cut(s) 167
NdeI CATATG 1 cut(s) 946
NdeII GATC 8 cut(s) 4, 13, 261, 342, 403, 613, 713, 763
NlaIII CATG 5 cut(s) 305, 611, 668, 792, 825
NlaIV GGNNCC 1 cut(s) 985
NmuCI GTSAC 1 cut(s) 644
NsbI TGCGCA 1 cut(s) 116
NspI RCATGY 2 cut(s) 792, 825
PciI ACATGT 1 cut(s) 821
PciSI GCTCTTC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 9 cut(s) 105, 279, 478, 481, 559, 580, 583, 592, 829
PpuMI RGGWCCY 1 cut(s) 521
PscI ACATGT 1 cut(s) 821
Psp124BI GAGCTC 2 cut(s) 288, 508
Psp5II RGGWCCY 1 cut(s) 521
Psp6I CCWGG 3 cut(s) 409, 657, 742
PspGI CCWGG 3 cut(s) 409, 657, 742
PspN4I GGNNCC 1 cut(s) 985
PspPI GGNCC 5 cut(s) 305, 521, 746, 950, 971
PspPPI RGGWCCY 1 cut(s) 521
PstI CTGCAG 1 cut(s) 595
PstNI CAGNNNCTG 1 cut(s) 704
PsuI RGATCY 3 cut(s) 4, 261, 713
RsaI GTAC 2 cut(s) 787, 886
RsaNI GTAC 2 cut(s) 786, 885
RseI CAYNNNNRTG 1 cut(s) 820
SacI GAGCTC 2 cut(s) 288, 508
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 6 cut(s) 18, 45, 207, 552, 842, 861
SatI GCNGC 9 cut(s) 104, 278, 477, 480, 558, 579, 582, 591, 828
Sau3AI GATC 8 cut(s) 4, 13, 261, 342, 403, 613, 713, 763
Sau96I GGNCC 5 cut(s) 305, 521, 746, 950, 971
ScrFI CCNGG 4 cut(s) 167, 411, 659, 744
SduI GDGCHC 5 cut(s) 183, 288, 496, 508, 569
SfaNI GCATC 2 cut(s) 55, 905
SfcI CTRYAG 1 cut(s) 591
SinI GGWCC 5 cut(s) 305, 521, 746, 950, 971
SmiMI CAYNNNNRTG 1 cut(s) 820
SmlI CTYRAG 2 cut(s) 44, 80
SmoI CTYRAG 2 cut(s) 44, 80
Sse9I AATT 4 cut(s) 51, 149, 809, 878
SsiI CCGC 1 cut(s) 969
SstI GAGCTC 2 cut(s) 288, 508
StyD4I CCNGG 4 cut(s) 165, 409, 657, 742
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 1 cut(s) 700
TaiI ACGT 3 cut(s) 421, 439, 499
TaqI TCGA 1 cut(s) 770
TasI AATT 4 cut(s) 51, 149, 809, 878
TatI WGTACW 2 cut(s) 785, 884
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 6 cut(s) 18, 45, 207, 552, 842, 861
Tru9I TTAA 6 cut(s) 18, 45, 207, 552, 842, 861
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 9 cut(s) 103, 277, 476, 479, 557, 578, 581, 590, 827
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 1 cut(s) 270
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 1 cut(s) 394
Vha464I CTTAAG 1 cut(s) 44
VpaK11BI GGWCC 5 cut(s) 305, 521, 746, 950, 971
XapI RAATTY 2 cut(s) 149, 878
XceI RCATGY 2 cut(s) 792, 825
XcmI CCANNNNNNNNNTGG 2 cut(s) 234, 299
XmnI GAANNNNTTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.