RLG00000020487

DNA damage response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011582
Physical Location & Seq
Forward (+)
65529992 .. 65532786
2795 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020487

Sequence Viewer

Length: 1038 bp
ATGATCCGCTGTGGCTTTAACAGTGAGCACAAGGACCTCAGAGTCCATATGGATCTCAATGATCTTAACAAGGTTTGGGAAATCAAACCACTTAGGAAAATTGGAGAAGAGGATGCAAGAAAAATCCTTGAGAGAGTTGCAAAGCAAGTGCAGCCTATAATGCGCAAGCGTAAATGGAAAGTCCGAATCCTTTCTGAATTCAGTCCTGCCAACCCGGCTCTTCAGGGGCTCAATATAGGAGGAGGTGCTGAAGTTAAGCTCAGACTGCGAAGGCCAAACAACGAATGGGATTTCTATCCGTATGAACAGATCCTTGATACAATGCTGCACGAGCTCTGCCACAACGAGCATGGTCCTCATAATGCCGACTTTTACAACCTTTTGGACGAGATCAGAAGGGAATGTGAGGAACTGATGGGTAAAGGGATTACCGGCACTGGACAAGGATTTGATCTTCCTGGGAGACGTTTGGGTGGTTTCTCACGTCAACCCCCTCCATCATCTCTACGCCAGACTGCCTTGGCTGCTGCTGAAAGCAGAGCACGTCGTGGAGCTCTATTGCCGTCAGGACCTAAGCGTTTAGGTGGGGATAGCAACATTAAGGCTGCTTTGAGCCCAATACAAGCTGCTGCTATGGCTGCAGAAAGGAGACTACATGATGATCTATGGTGTGGGTCAAAGTCTTTAGAGGGTGACACTAATGTCCAGGGTCATGTCGGAACTTCTCAAAAGCCACAAGCTTTCACAGTTACTGATGGAAGATCTACCCAAACTTCTACTCAACCAAAGACAGGTCCGGAAAAAGTAGAAGATCAATCGAAGTGGCAATGTAGTACGTGCACTTTACTAAATGAGGAATTGGCATTGACATGTGCAGCCTGCGCGACTTTAAAAGATAACACCAAGTTTAAGGTTTGGTCTTGCAAATTTTGTACATTAGAAAACAGAGTTGGGGTAGAAAGATGCTTAGCTTGTGGAGAATGGAGATACTCATATGGTCCTCCTGTCTCCAATCGCGGACCTTATGTTGGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WLM zf-RanBP

Protein Analysis

346

Amino Acids

38.54

Weight (kDa)

8.95

Isoelectric Point (pI)

56.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WLM PF08325 24 - 218 1.3e-58 WLM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 41, 701
Acc16I TGCGCA 1 cut(s) 164
Acc65I GGTACC 1 cut(s) 1031
AccB1I GGYRCC 1 cut(s) 1031
AccII CGCG 2 cut(s) 884, 1017
AccIII TCCGGA 1 cut(s) 796
AciI CCGC 2 cut(s) 7, 1017
AclWI GGATC 2 cut(s) 60, 304
AcsI RAATTY 2 cut(s) 197, 926
AcuI CTGAAG 2 cut(s) 206, 270
AdeI CACNNNGTG 1 cut(s) 548
AfaI GTAC 3 cut(s) 835, 934, 1033
AfiI CCNNNNNNNGG 2 cut(s) 791, 1028
AflIII ACRYGT 1 cut(s) 869
AjiI CACGTC 2 cut(s) 485, 545
AjnI CCWGG 2 cut(s) 457, 705
AjuI GAANNNNNNNTTGG 2 cut(s) 933, 965
AluBI AGCT 6 cut(s) 259, 334, 554, 626, 740, 971
AluI AGCT 6 cut(s) 259, 334, 554, 626, 740, 971
Alw21I GWGCWC 5 cut(s) 30, 336, 544, 556, 842
Alw26I GTCTC 3 cut(s) 457, 643, 1012
Alw44I GTGCAC 1 cut(s) 838
AlwI GGATC 2 cut(s) 60, 304
AlwNI CAGNNNCTG 1 cut(s) 752
Aor13HI TCCGGA 1 cut(s) 796
AoxI GGCC 1 cut(s) 272
ApaLI GTGCAC 1 cut(s) 838
ApeKI GCWGC 9 cut(s) 151, 325, 524, 527, 605, 626, 629, 638, 875
ApoI RAATTY 2 cut(s) 197, 926
Asp700I GAANNNNTTC 1 cut(s) 190
Asp718I GGTACC 1 cut(s) 1031
AspLEI GCGC 2 cut(s) 165, 884
AspS9I GGNCC 6 cut(s) 34, 353, 569, 794, 998, 1019
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 704
AvaII GGWCC 6 cut(s) 34, 353, 569, 794, 998, 1019
BaeGI GKGCMC 1 cut(s) 842
BanI GGYRCC 1 cut(s) 1031
BanII GRGCYC 4 cut(s) 231, 336, 556, 617
BauI CACGAG 1 cut(s) 329
Bbv12I GWGCWC 5 cut(s) 30, 336, 544, 556, 842
BbvI GCAGC 9 cut(s) 163, 312, 511, 514, 592, 613, 616, 625, 887
BccI CCATC 3 cut(s) 409, 505, 749
BceAI ACGGC 1 cut(s) 547
BciT130I CCWGG 2 cut(s) 459, 707
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 3 cut(s) 457, 643, 1012
BfmI CTRYAG 1 cut(s) 639
BglI GCCNNNNNGGC 1 cut(s) 215
BglII AGATCT 1 cut(s) 761
BisI GCNGC 9 cut(s) 152, 326, 525, 528, 606, 627, 630, 639, 876
BlpI GCTNAGC 1 cut(s) 967
BlsI GCNGC 9 cut(s) 153, 327, 526, 529, 607, 628, 631, 640, 877
Bme1390I CCNGG 3 cut(s) 215, 459, 707
Bme18I GGWCC 6 cut(s) 34, 353, 569, 794, 998, 1019
BmgBI CACGTC 2 cut(s) 485, 545
BmgT120I GGNCC 6 cut(s) 34, 353, 569, 794, 998, 1019
BmiI GGNNCC 1 cut(s) 1033
BmrFI CCNGG 3 cut(s) 215, 459, 707
BmsI GCATC 2 cut(s) 103, 953
Bpu10I CCTNAGC 1 cut(s) 573
Bpu1102I GCTNAGC 1 cut(s) 967
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 215
BsaAI YACGTR 1 cut(s) 837
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 458, 519, 706
BsaWI WCCGGW 1 cut(s) 796
Bsc4I CCNNNNNNNGG 2 cut(s) 791, 1028
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 442
Bse3DI GCAATG 1 cut(s) 833
Bse8I GATNNNNATC 1 cut(s) 294
BseAI TCCGGA 1 cut(s) 796
BseBI CCWGG 2 cut(s) 459, 707
BseDI CCNNGG 3 cut(s) 458, 519, 706
BseGI GGATG 1 cut(s) 118
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 2 cut(s) 791, 1028
BseMI GCAATG 1 cut(s) 833
BseMII CTCAG 2 cut(s) 52, 274
BseNI ACTGG 1 cut(s) 442
BseRI GAGGAG 1 cut(s) 255
BseSI GKGCMC 1 cut(s) 842
BseXI GCAGC 9 cut(s) 163, 312, 511, 514, 592, 613, 616, 625, 887
BsgI GTGCAG 3 cut(s) 170, 311, 894
Bsh1236I CGCG 2 cut(s) 884, 1017
BshFI GGCC 1 cut(s) 274
BshNI GGYRCC 1 cut(s) 1031
BsiHKAI GWGCWC 5 cut(s) 30, 336, 544, 556, 842
BsiSI CCGG 3 cut(s) 215, 432, 797
BslI CCNNNNNNNGG 2 cut(s) 791, 1028
BsmAI GTCTC 3 cut(s) 457, 643, 1012
BsmBI CGTCTC 1 cut(s) 457
BsnI GGCC 1 cut(s) 274
Bsp1286I GDGCHC 7 cut(s) 30, 231, 336, 544, 556, 617, 842
Bsp13I TCCGGA 1 cut(s) 796
Bsp1407I TGTACA 1 cut(s) 932
Bsp143I GATC 9 cut(s) 3, 52, 61, 309, 390, 451, 661, 761, 811
Bsp1720I GCTNAGC 1 cut(s) 967
BspACI CCGC 2 cut(s) 7, 1017
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 2 cut(s) 51, 273
BspEI TCCGGA 1 cut(s) 796
BspFNI CGCG 2 cut(s) 884, 1017
BspLI GGNNCC 1 cut(s) 1033
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 2 cut(s) 60, 304
BspQI GCTCTTC 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 1031
BsrDI GCAATG 1 cut(s) 833
BsrFI RCCGGY 1 cut(s) 431
BsrGI TGTACA 1 cut(s) 932
BsrI ACTGG 1 cut(s) 442
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 3 cut(s) 458, 519, 706
BssMI GATC 9 cut(s) 3, 52, 61, 309, 390, 451, 661, 761, 811
BssSI CACGAG 1 cut(s) 329
BssT1I CCWWGG 1 cut(s) 519
Bst2BI CACGAG 1 cut(s) 329
Bst2UI CCWGG 2 cut(s) 459, 707
Bst4CI ACNGT 2 cut(s) 23, 748
Bst6I CTCTTC 2 cut(s) 102, 225
BstAUI TGTACA 1 cut(s) 932
BstBAI YACGTR 1 cut(s) 837
BstC8I GCNNGC 2 cut(s) 167, 880
BstDEI CTNAG 5 cut(s) 38, 92, 260, 573, 967
BstF5I GGATG 1 cut(s) 118
BstFNI CGCG 2 cut(s) 884, 1017
BstHHI GCGC 2 cut(s) 165, 884
BstKTI GATC 9 cut(s) 6, 55, 64, 312, 393, 454, 664, 764, 814
BstMAI GTCTC 3 cut(s) 457, 643, 1012
BstMBI GATC 9 cut(s) 3, 52, 61, 309, 390, 451, 661, 761, 811
BstMWI GCNNNNNNNGC 9 cut(s) 151, 160, 215, 265, 331, 524, 635, 638, 881
BstNI CCWGG 2 cut(s) 459, 707
BstNSI RCATGY 1 cut(s) 873
BstSCI CCNGG 3 cut(s) 213, 457, 705
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 1 cut(s) 842
BstUI CGCG 2 cut(s) 884, 1017
BstV1I GCAGC 9 cut(s) 163, 312, 511, 514, 592, 613, 616, 625, 887
BstX2I RGATCY 3 cut(s) 52, 309, 761
BstYI RGATCY 3 cut(s) 52, 309, 761
BsuRI GGCC 1 cut(s) 274
BtrI CACGTC 2 cut(s) 485, 545
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 28, 435
Cac8I GCNNGC 2 cut(s) 167, 880
CaiI CAGNNNCTG 1 cut(s) 752
CfoI GCGC 2 cut(s) 165, 884
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 6 cut(s) 34, 353, 569, 794, 998, 1019
Csp6I GTAC 3 cut(s) 834, 933, 1032
CspCI CAANNNNNGTGG 2 cut(s) 803, 838
CviAII CATG 4 cut(s) 350, 656, 713, 870
CviQI GTAC 3 cut(s) 834, 933, 1032
DdeI CTNAG 5 cut(s) 38, 92, 260, 573, 967
DpnI GATC 9 cut(s) 5, 54, 63, 311, 392, 453, 663, 763, 813
DpnII GATC 9 cut(s) 3, 52, 61, 309, 390, 451, 661, 761, 811
DraI TTTAAA 1 cut(s) 891
DraIII CACNNNGTG 1 cut(s) 548
DrdI GACNNNNNNGTC 2 cut(s) 41, 701
DseDI GACNNNNNNGTC 2 cut(s) 41, 701
Eam1104I CTCTTC 2 cut(s) 102, 225
EarI CTCTTC 2 cut(s) 102, 225
Ecl136II GAGCTC 2 cut(s) 334, 554
Eco130I CCWWGG 1 cut(s) 519
Eco24I GRGCYC 4 cut(s) 231, 336, 556, 617
Eco47I GGWCC 6 cut(s) 34, 353, 569, 794, 998, 1019
Eco53kI GAGCTC 2 cut(s) 334, 554
Eco57I CTGAAG 2 cut(s) 206, 270
EcoICRI GAGCTC 2 cut(s) 334, 554
EcoO109I RGGNCCY 2 cut(s) 34, 569
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 457, 705
EcoT14I CCWWGG 1 cut(s) 519
EcoT38I GRGCYC 4 cut(s) 231, 336, 556, 617
ErhI CCWWGG 1 cut(s) 519
Esp3I CGTCTC 1 cut(s) 457
FaeI CATG 4 cut(s) 353, 659, 716, 873
FatI CATG 4 cut(s) 349, 655, 712, 869
FauNDI CATATG 2 cut(s) 48, 994
Fnu4HI GCNGC 9 cut(s) 152, 326, 525, 528, 606, 627, 630, 639, 876
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 4 cut(s) 231, 336, 556, 617
Fsp4HI GCNGC 9 cut(s) 152, 326, 525, 528, 606, 627, 630, 639, 876
FspI TGCGCA 1 cut(s) 164
GlaI GCGC 2 cut(s) 164, 883
GluI GCNGC 9 cut(s) 152, 326, 525, 528, 606, 627, 630, 639, 876
HaeIII GGCC 1 cut(s) 274
HapII CCGG 3 cut(s) 215, 432, 797
HhaI GCGC 2 cut(s) 165, 884
Hin1II CATG 4 cut(s) 353, 659, 716, 873
Hin6I GCGC 2 cut(s) 163, 882
HinP1I GCGC 2 cut(s) 163, 882
HincII GTYRAC 1 cut(s) 488
HindII GTYRAC 1 cut(s) 488
HindIII AAGCTT 1 cut(s) 738
HinfI GANTC 2 cut(s) 42, 186
HpaII CCGG 3 cut(s) 215, 432, 797
HphI GGTGA 1 cut(s) 704
Hpy166II GTNNAC 2 cut(s) 488, 840
Hpy188I TCNGA 6 cut(s) 41, 185, 196, 263, 395, 719
Hpy188III TCNNGA 2 cut(s) 567, 797
Hpy8I GTNNAC 2 cut(s) 488, 840
Hpy99I CGWCG 1 cut(s) 549
HpyAV CCTTC 2 cut(s) 264, 390
HpyCH4III ACNGT 2 cut(s) 23, 748
HpyCH4IV ACGT 4 cut(s) 466, 484, 544, 836
HpyCH4V TGCA 8 cut(s) 116, 140, 151, 328, 641, 840, 875, 924
HpyF10VI GCNNNNNNNGC 9 cut(s) 151, 160, 215, 265, 331, 524, 635, 638, 881
HpyF3I CTNAG 5 cut(s) 38, 92, 260, 573, 967
HpySE526I ACGT 4 cut(s) 466, 484, 544, 836
Hsp92II CATG 4 cut(s) 353, 659, 716, 873
HspAI GCGC 2 cut(s) 163, 882
Kpn2I TCCGGA 1 cut(s) 796
KpnI GGTACC 1 cut(s) 1035
Kzo9I GATC 9 cut(s) 3, 52, 61, 309, 390, 451, 661, 761, 811
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 551
Lsp1109I GCAGC 9 cut(s) 163, 312, 511, 514, 592, 613, 616, 625, 887
LweI GCATC 2 cut(s) 103, 953
MaeII ACGT 4 cut(s) 466, 484, 544, 836
MaeIII GTNAC 2 cut(s) 692, 748
MalI GATC 9 cut(s) 5, 54, 63, 311, 392, 453, 663, 763, 813
MboI GATC 9 cut(s) 3, 52, 61, 309, 390, 451, 661, 761, 811
MboII GAAGA 5 cut(s) 119, 212, 446, 771, 821
MflI RGATCY 3 cut(s) 52, 309, 761
MhlI GDGCHC 7 cut(s) 30, 231, 336, 544, 556, 617, 842
MluCI AATT 4 cut(s) 99, 197, 857, 926
MlyI GAGTC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 697
MroI TCCGGA 1 cut(s) 796
MroXI GAANNNNTTC 1 cut(s) 190
MseI TTAA 6 cut(s) 18, 66, 255, 600, 890, 909
MslI CAYNNNNRTG 1 cut(s) 868
MspA1I CMGCKG 1 cut(s) 9
MspI CCGG 3 cut(s) 215, 432, 797
MspR9I CCNGG 3 cut(s) 215, 459, 707
MvaI CCWGG 2 cut(s) 459, 707
MvnI CGCG 2 cut(s) 884, 1017
MwoI GCNNNNNNNGC 9 cut(s) 151, 160, 215, 265, 331, 524, 635, 638, 881
NciI CCSGG 1 cut(s) 215
NdeI CATATG 2 cut(s) 48, 994
NdeII GATC 9 cut(s) 3, 52, 61, 309, 390, 451, 661, 761, 811
NlaIII CATG 4 cut(s) 353, 659, 716, 873
NlaIV GGNNCC 1 cut(s) 1033
NmuCI GTSAC 1 cut(s) 692
NsbI TGCGCA 1 cut(s) 164
NspI RCATGY 1 cut(s) 873
PciI ACATGT 1 cut(s) 869
PciSI GCTCTTC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 9 cut(s) 153, 327, 526, 529, 607, 628, 631, 640, 877
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Ppu21I YACGTR 1 cut(s) 837
PpuMI RGGWCCY 2 cut(s) 34, 569
PscI ACATGT 1 cut(s) 869
Psp124BI GAGCTC 2 cut(s) 336, 556
Psp5II RGGWCCY 2 cut(s) 34, 569
Psp6I CCWGG 2 cut(s) 457, 705
PspGI CCWGG 2 cut(s) 457, 705
PspN4I GGNNCC 1 cut(s) 1033
PspPI GGNCC 6 cut(s) 34, 353, 569, 794, 998, 1019
PspPPI RGGWCCY 2 cut(s) 34, 569
PstI CTGCAG 1 cut(s) 643
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 3 cut(s) 52, 309, 761
RsaI GTAC 3 cut(s) 835, 934, 1033
RsaNI GTAC 3 cut(s) 834, 933, 1032
RseI CAYNNNNRTG 1 cut(s) 868
SacI GAGCTC 2 cut(s) 336, 556
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 6 cut(s) 18, 66, 255, 600, 890, 909
SatI GCNGC 9 cut(s) 152, 326, 525, 528, 606, 627, 630, 639, 876
Sau3AI GATC 9 cut(s) 3, 52, 61, 309, 390, 451, 661, 761, 811
Sau96I GGNCC 6 cut(s) 34, 353, 569, 794, 998, 1019
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 3 cut(s) 215, 459, 707
SduI GDGCHC 7 cut(s) 30, 231, 336, 544, 556, 617, 842
SfaNI GCATC 2 cut(s) 103, 953
SfcI CTRYAG 1 cut(s) 639
SinI GGWCC 6 cut(s) 34, 353, 569, 794, 998, 1019
SmiMI CAYNNNNRTG 1 cut(s) 868
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 4 cut(s) 99, 197, 857, 926
SsiI CCGC 2 cut(s) 7, 1017
SstI GAGCTC 2 cut(s) 336, 556
StyD4I CCNGG 3 cut(s) 213, 457, 705
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 2 cut(s) 23, 748
TaiI ACGT 4 cut(s) 469, 487, 547, 839
TaqI TCGA 1 cut(s) 818
TasI AATT 4 cut(s) 99, 197, 857, 926
TatI WGTACW 1 cut(s) 932
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 6 cut(s) 18, 66, 255, 600, 890, 909
Tru9I TTAA 6 cut(s) 18, 66, 255, 600, 890, 909
TscAI CASTG 2 cut(s) 28, 442
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 9 cut(s) 151, 325, 524, 527, 605, 626, 629, 638, 875
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 1 cut(s) 318
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 2 cut(s) 28, 442
VneI GTGCAC 1 cut(s) 838
VpaK11BI GGWCC 6 cut(s) 34, 353, 569, 794, 998, 1019
XapI RAATTY 2 cut(s) 197, 926
XceI RCATGY 1 cut(s) 873
XcmI CCANNNNNNNNNTGG 2 cut(s) 282, 347
XmnI GAANNNNTTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.