Rh2BG491800

DNA damage response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011582
Physical Location & Seq
Forward (+)
69099865 .. 69103058
3194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG491800.1

Sequence Viewer

Length: 693 bp
ATGCATGCTGTGTGGATGATTGTCACTTTACTTGGTTCCCATGGTTTTCTGCAGGAATGTGAGGAACTGATGGGTAAAGGGATTACCGGCACTGGACAAGGATTTGATCTTCCTGGGAGACGTTTGGGTGGTTTCTCACGTCAACCCCCTCCATCATCTCTACGCCAGACTGCCTTGGCTGCTGCTGAAAGCAGAGCACGTCGTGGAGCTCTATTGCCTTCAGGACCTAAGCGTTTAGGTGGGGATAGCAACATTAAGGCTGCTTTGAGCCCAATACAAGCTGCTGCTATGGCTGCAGAAAGGAGACTACATGATGATCTATGGTGTGGGTCAAAGTCTTTAGAGGGTGACACTAATGTCCAGGGTCATGTCGGAACTTCTCAAAAGCCACAAGCTTTCACAGTTACTGATGGAAGATCTACCCAAACTTCTACTCAACCAAAGCCAGGTCCGGAAAAAGTAGATGATCAATCGAAGTGGCAATGTAGTACATGCACTTTACTAAATGAGGAATTGGCATTGACATGTGCAGCCTGCGCGACTTTAAAAGATAACACCAAGTTTAAGGTTTGGTCTTGCAAATTTTGTACATTAGAAAACAGAGTTGGGGTAGAAAGATGCTTAGCTTGTGGAGAATGGAGATACTCATATGGTCCTCCTGTCTCCAATCGCGGACCTTATGTTGGCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WLM zf-RanBP

Protein Analysis

230

Amino Acids

24.74

Weight (kDa)

8.83

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WLM PF08325 18 - 103 1.6e-07 WLM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 686
AccII CGCG 2 cut(s) 539, 672
AccIII TCCGGA 1 cut(s) 451
AciI CCGC 1 cut(s) 672
AcsI RAATTY 1 cut(s) 581
AcuI CTGAAG 1 cut(s) 204
AdeI CACNNNGTG 1 cut(s) 203
AfaI GTAC 2 cut(s) 490, 589
AfiI CCNNNNNNNGG 2 cut(s) 446, 683
AflIII ACRYGT 1 cut(s) 524
AjiI CACGTC 2 cut(s) 140, 200
AjnI CCWGG 3 cut(s) 112, 360, 445
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AluBI AGCT 4 cut(s) 209, 281, 395, 626
AluI AGCT 4 cut(s) 209, 281, 395, 626
Alw21I GWGCWC 2 cut(s) 199, 211
Alw26I GTCTC 3 cut(s) 112, 298, 667
AlwNI CAGNNNCTG 1 cut(s) 407
Aor13HI TCCGGA 1 cut(s) 451
ApeKI GCWGC 7 cut(s) 179, 182, 260, 281, 284, 293, 530
ApoI RAATTY 1 cut(s) 581
AspLEI GCGC 1 cut(s) 539
AspS9I GGNCC 4 cut(s) 224, 449, 653, 674
AsuHPI GGTGA 1 cut(s) 359
AvaII GGWCC 4 cut(s) 224, 449, 653, 674
BanI GGYRCC 1 cut(s) 686
BanII GRGCYC 2 cut(s) 211, 272
Bbv12I GWGCWC 2 cut(s) 199, 211
BbvI GCAGC 7 cut(s) 166, 169, 247, 268, 271, 280, 542
BccI CCATC 3 cut(s) 64, 160, 404
BciT130I CCWGG 3 cut(s) 114, 362, 447
BclI TGATCA 1 cut(s) 466
BcoDI GTCTC 3 cut(s) 112, 298, 667
BfmI CTRYAG 2 cut(s) 50, 294
BglII AGATCT 1 cut(s) 416
BisI GCNGC 7 cut(s) 180, 183, 261, 282, 285, 294, 531
BlpI GCTNAGC 1 cut(s) 622
BlsI GCNGC 7 cut(s) 181, 184, 262, 283, 286, 295, 532
Bme1390I CCNGG 3 cut(s) 114, 362, 447
Bme18I GGWCC 4 cut(s) 224, 449, 653, 674
BmgBI CACGTC 2 cut(s) 140, 200
BmgT120I GGNCC 4 cut(s) 224, 449, 653, 674
BmiI GGNNCC 2 cut(s) 37, 688
BmrFI CCNGG 3 cut(s) 114, 362, 447
BmsI GCATC 1 cut(s) 608
Bpu10I CCTNAGC 1 cut(s) 228
Bpu1102I GCTNAGC 1 cut(s) 622
BsaJI CCNNGG 4 cut(s) 40, 113, 174, 361
BsaWI WCCGGW 1 cut(s) 451
Bsc4I CCNNNNNNNGG 2 cut(s) 446, 683
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 488
BseAI TCCGGA 1 cut(s) 451
BseBI CCWGG 3 cut(s) 114, 362, 447
BseDI CCNNGG 4 cut(s) 40, 113, 174, 361
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 446, 683
BseMI GCAATG 1 cut(s) 488
BseNI ACTGG 1 cut(s) 97
BseXI GCAGC 7 cut(s) 166, 169, 247, 268, 271, 280, 542
BsgI GTGCAG 1 cut(s) 549
Bsh1236I CGCG 2 cut(s) 539, 672
BshNI GGYRCC 1 cut(s) 686
BsiHKAI GWGCWC 2 cut(s) 199, 211
BsiSI CCGG 2 cut(s) 87, 452
BslI CCNNNNNNNGG 2 cut(s) 446, 683
BsmAI GTCTC 3 cut(s) 112, 298, 667
BsmBI CGTCTC 1 cut(s) 112
Bsp1286I GDGCHC 3 cut(s) 199, 211, 272
Bsp13I TCCGGA 1 cut(s) 451
Bsp1407I TGTACA 1 cut(s) 587
Bsp143I GATC 4 cut(s) 106, 316, 416, 466
Bsp1720I GCTNAGC 1 cut(s) 622
Bsp19I CCATGG 1 cut(s) 40
BspACI CCGC 1 cut(s) 672
BspEI TCCGGA 1 cut(s) 451
BspFNI CGCG 2 cut(s) 539, 672
BspLI GGNNCC 2 cut(s) 37, 688
BspMAI CTGCAG 2 cut(s) 54, 298
BspT107I GGYRCC 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 488
BsrFI RCCGGY 1 cut(s) 86
BsrGI TGTACA 1 cut(s) 587
BsrI ACTGG 1 cut(s) 97
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 4 cut(s) 40, 113, 174, 361
BssMI GATC 4 cut(s) 106, 316, 416, 466
BssT1I CCWWGG 2 cut(s) 40, 174
Bst2UI CCWGG 3 cut(s) 114, 362, 447
Bst4CI ACNGT 1 cut(s) 403
BstAUI TGTACA 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 6, 535
BstDEI CTNAG 2 cut(s) 228, 622
BstDSI CCRYGG 1 cut(s) 40
BstF5I GGATG 1 cut(s) 21
BstFNI CGCG 2 cut(s) 539, 672
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 4 cut(s) 109, 319, 419, 469
BstMAI GTCTC 3 cut(s) 112, 298, 667
BstMBI GATC 4 cut(s) 106, 316, 416, 466
BstMWI GCNNNNNNNGC 4 cut(s) 179, 290, 293, 536
BstNI CCWGG 3 cut(s) 114, 362, 447
BstNSI RCATGY 3 cut(s) 8, 495, 528
BstSCI CCNGG 3 cut(s) 112, 360, 445
BstSFI CTRYAG 2 cut(s) 50, 294
BstUI CGCG 2 cut(s) 539, 672
BstV1I GCAGC 7 cut(s) 166, 169, 247, 268, 271, 280, 542
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BtgI CCRYGG 1 cut(s) 40
BtrI CACGTC 2 cut(s) 140, 200
BtsCI GGATG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 6, 535
CaiI CAGNNNCTG 1 cut(s) 407
CfoI GCGC 1 cut(s) 539
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 4 cut(s) 224, 449, 653, 674
Csp6I GTAC 2 cut(s) 489, 588
CspCI CAANNNNNGTGG 2 cut(s) 458, 493
CviAII CATG 6 cut(s) 5, 41, 311, 368, 492, 525
CviQI GTAC 2 cut(s) 489, 588
DdeI CTNAG 2 cut(s) 228, 622
DpnI GATC 4 cut(s) 108, 318, 418, 468
DpnII GATC 4 cut(s) 106, 316, 416, 466
DraI TTTAAA 1 cut(s) 546
DraIII CACNNNGTG 1 cut(s) 203
DrdI GACNNNNNNGTC 1 cut(s) 356
DseDI GACNNNNNNGTC 1 cut(s) 356
Ecl136II GAGCTC 1 cut(s) 209
Eco130I CCWWGG 2 cut(s) 40, 174
Eco24I GRGCYC 2 cut(s) 211, 272
Eco47I GGWCC 4 cut(s) 224, 449, 653, 674
Eco53kI GAGCTC 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 204
EcoICRI GAGCTC 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 224
EcoRII CCWGG 3 cut(s) 112, 360, 445
EcoT14I CCWWGG 2 cut(s) 40, 174
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 211, 272
ErhI CCWWGG 2 cut(s) 40, 174
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 6 cut(s) 8, 44, 314, 371, 495, 528
FatI CATG 6 cut(s) 4, 40, 310, 367, 491, 524
FauNDI CATATG 1 cut(s) 649
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 7 cut(s) 180, 183, 261, 282, 285, 294, 531
FokI GGATG 1 cut(s) 28
FriOI GRGCYC 2 cut(s) 211, 272
Fsp4HI GCNGC 7 cut(s) 180, 183, 261, 282, 285, 294, 531
GlaI GCGC 1 cut(s) 538
GluI GCNGC 7 cut(s) 180, 183, 261, 282, 285, 294, 531
HapII CCGG 2 cut(s) 87, 452
HhaI GCGC 1 cut(s) 539
Hin1II CATG 6 cut(s) 8, 44, 314, 371, 495, 528
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HindIII AAGCTT 1 cut(s) 393
HpaII CCGG 2 cut(s) 87, 452
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 374
Hpy188III TCNNGA 2 cut(s) 222, 452
Hpy8I GTNNAC 1 cut(s) 143
Hpy99I CGWCG 1 cut(s) 204
HpyAV CCTTC 1 cut(s) 228
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4IV ACGT 3 cut(s) 121, 139, 199
HpyCH4V TGCA 6 cut(s) 4, 52, 296, 495, 530, 579
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 290, 293, 536
HpyF3I CTNAG 2 cut(s) 228, 622
HpySE526I ACGT 3 cut(s) 121, 139, 199
Hsp92II CATG 6 cut(s) 8, 44, 314, 371, 495, 528
HspAI GCGC 1 cut(s) 537
Kpn2I TCCGGA 1 cut(s) 451
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 4 cut(s) 106, 316, 416, 466
LmnI GCTCC 1 cut(s) 206
Lsp1109I GCAGC 7 cut(s) 166, 169, 247, 268, 271, 280, 542
LweI GCATC 1 cut(s) 608
MaeII ACGT 3 cut(s) 121, 139, 199
MaeIII GTNAC 3 cut(s) 22, 347, 403
MalI GATC 4 cut(s) 108, 318, 418, 468
MboI GATC 4 cut(s) 106, 316, 416, 466
MboII GAAGA 2 cut(s) 101, 426
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 3 cut(s) 199, 211, 272
MluCI AATT 2 cut(s) 512, 581
MmeI TCCRAC 1 cut(s) 352
MnlI CCTC 5 cut(s) 55, 159, 337, 502, 666
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 451
MseI TTAA 3 cut(s) 255, 545, 564
MslI CAYNNNNRTG 1 cut(s) 523
MspI CCGG 2 cut(s) 87, 452
MspR9I CCNGG 3 cut(s) 114, 362, 447
MvaI CCWGG 3 cut(s) 114, 362, 447
MvnI CGCG 2 cut(s) 539, 672
MwoI GCNNNNNNNGC 4 cut(s) 179, 290, 293, 536
NcoI CCATGG 1 cut(s) 40
NdeI CATATG 1 cut(s) 649
NdeII GATC 4 cut(s) 106, 316, 416, 466
NlaIII CATG 6 cut(s) 8, 44, 314, 371, 495, 528
NlaIV GGNNCC 2 cut(s) 37, 688
NmuCI GTSAC 2 cut(s) 22, 347
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 8, 495, 528
PaeI GCATGC 1 cut(s) 8
PciI ACATGT 1 cut(s) 524
PkrI GCNGC 7 cut(s) 181, 184, 262, 283, 286, 295, 532
PpuMI RGGWCCY 1 cut(s) 224
PscI ACATGT 1 cut(s) 524
Psp124BI GAGCTC 1 cut(s) 211
Psp5II RGGWCCY 1 cut(s) 224
Psp6I CCWGG 3 cut(s) 112, 360, 445
PspGI CCWGG 3 cut(s) 112, 360, 445
PspN4I GGNNCC 2 cut(s) 37, 688
PspPI GGNCC 4 cut(s) 224, 449, 653, 674
PspPPI RGGWCCY 1 cut(s) 224
PstI CTGCAG 2 cut(s) 54, 298
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 1 cut(s) 416
RsaI GTAC 2 cut(s) 490, 589
RsaNI GTAC 2 cut(s) 489, 588
RseI CAYNNNNRTG 1 cut(s) 523
SacI GAGCTC 1 cut(s) 211
SaqAI TTAA 3 cut(s) 255, 545, 564
SatI GCNGC 7 cut(s) 180, 183, 261, 282, 285, 294, 531
Sau3AI GATC 4 cut(s) 106, 316, 416, 466
Sau96I GGNCC 4 cut(s) 224, 449, 653, 674
ScrFI CCNGG 3 cut(s) 114, 362, 447
SduI GDGCHC 3 cut(s) 199, 211, 272
SfaNI GCATC 1 cut(s) 608
SfcI CTRYAG 2 cut(s) 50, 294
SinI GGWCC 4 cut(s) 224, 449, 653, 674
SmiMI CAYNNNNRTG 1 cut(s) 523
SphI GCATGC 1 cut(s) 8
Sse9I AATT 2 cut(s) 512, 581
SsiI CCGC 1 cut(s) 672
SstI GAGCTC 1 cut(s) 211
StyD4I CCNGG 3 cut(s) 112, 360, 445
StyI CCWWGG 2 cut(s) 40, 174
TaaI ACNGT 1 cut(s) 403
TaiI ACGT 3 cut(s) 124, 142, 202
TaqI TCGA 1 cut(s) 473
TasI AATT 2 cut(s) 512, 581
TatI WGTACW 2 cut(s) 488, 587
Tru1I TTAA 3 cut(s) 255, 545, 564
Tru9I TTAA 3 cut(s) 255, 545, 564
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 2 cut(s) 22, 347
TseI GCWGC 7 cut(s) 179, 182, 260, 281, 284, 293, 530
Tsp45I GTSAC 2 cut(s) 22, 347
TspRI CASTG 1 cut(s) 97
VpaK11BI GGWCC 4 cut(s) 224, 449, 653, 674
XapI RAATTY 1 cut(s) 581
XceI RCATGY 3 cut(s) 8, 495, 528
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.