FvH4_6g38330

CorA-like Mg2+ transporter protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
30304043 .. 30310242
6200 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38330.t1

Sequence Viewer

Length: 1362 bp
ATGAGAAACAACATGAATAAGCTAGAGGATCAGAAACACCATTCTAGTAGTAGTGATGTCAGTCCACTTAGTGATCTTTGGACTGATGGACTCATTTGTGCATTTGAATTTGTTCGAGGGGATAAAAAGGTGCTGGCAGCTCATTATGTTGTAAAAGATGCAGCAAACAAGCAAGTTCTGTCACCTGAGCGGACTGAATCCCATCACTCAAGAAAGAATGTAAAACACTCATGTGAATCCTCACCGAAAAGTGGTTCAGGAGTTGGTCAGAATCGAAAGGAAGAAGGCCTTAACTACAAACAGAATTCTCACTCGGGCCATTTCCGTGGGAGAGAAGGTCCTCCCAAAAGTTGTTGGGTACCGATTGGCTGGGATAGGATTTCTGAACTTTTCCAGACAGTGCACGTTGATGATGGCTGGGACTTGCAGCCTATGGAGTTTGCAAGCGATGATGATGATGTCGCTGTAGCAGATGTGGCAGCTCCTTACTGGGAGAAACCGGTAGGGCCCACTTGGTGGTGTCACGTAGCTGCTGATCATCCATGCATCAATTCATGGGTGAGTACTGCTCAATGGCTGCATCCTGCTGTCAGCATTGCGTTGCGAGATGAAAGTAGGTTGATAAGTGATCTGATGAAGCACCTTCTGTATGAGGTTCCTGTAAGGGTTGCTAGTGGACTATTATTTGAGCTCCTGGGCCAGTCAGTAGGTGATCCATTTGCTGATGAAGATGACATTCCCATTGTTCTTAGATCATGGCAGGCACAGAATTTTCTAGTATCAGCATTGCATGTGAAAAGTTCTGCACAGAACATTAATGTGTTGGGAATAGCAGAAGTCCAGGAGCTGCTTGCTGCTGAGGGCATTACCATGCCACGTACTATTCATGAAGTTATAGCACATTTAGCCTGCCGCCTAGCATGCTGGGATGATAGGTTATTTCGCAAATCTGTATTTTGGGCGGCAGATGAAGTTGTACTGAAGTTTATGAACAGGAGGAGCCATGAAGATATGCACCTGTTCAGTATAATTTTGAACCAAGAATTCCGAAGGTTATCAACCCAGGTTATAAGAGTGAAGTGGTTGCTACATGCAAGAGAAGAAATTGTTTTTGAGCTTCTTCGGCACTTGAGAGGGGATGCCACAAGGCAGTTGCTAGAACAACTAAGAAAGAATACAAGGGGGTCGATTGAAGAGCAAGAAGCAGTTTTTGGTCGCTTGTTTACCATTCAAAATATGATGCAGAGCACTGTTTATGCATGGTTACAGGACAAAAGCCTAACAGTTCAACATAATCTGGGAGTTTTTGGCGGTTGTGGCCTTGTCCTATCTATTATTACGGGACTTTTGGGATCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

454

Amino Acids

51.29

Weight (kDa)

6.16

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1070
Acc65I GGTACC 1 cut(s) 358
AccB1I GGYRCC 1 cut(s) 358
AccB7I CCANNNNNTGG 1 cut(s) 516
AccBSI CCGCTC 1 cut(s) 190
AciI CCGC 4 cut(s) 190, 913, 962, 1311
AclWI GGATC 3 cut(s) 36, 707, 1360
AcsI RAATTY 4 cut(s) 107, 304, 769, 1043
AcuI CTGAAG 1 cut(s) 1001
AdeI CACNNNGTG 2 cut(s) 71, 516
AfaI GTAC 4 cut(s) 360, 565, 880, 978
AfiI CCNNNNNNNGG 2 cut(s) 251, 516
AgeI ACCGGT 1 cut(s) 499
AgsI TTSAA 5 cut(s) 107, 1036, 1193, 1232, 1289
AjnI CCWGG 3 cut(s) 693, 840, 1062
AjuI GAANNNNNNNTTGG 2 cut(s) 1194, 1226
AleI CACNNNNGTG 1 cut(s) 231
AluBI AGCT 7 cut(s) 22, 140, 482, 530, 691, 847, 1117
AluI AGCT 7 cut(s) 22, 140, 482, 530, 691, 847, 1117
Alw21I GWGCWC 3 cut(s) 405, 693, 1250
Alw44I GTGCAC 1 cut(s) 401
AlwI GGATC 3 cut(s) 36, 707, 1360
AlwNI CAGNNNCTG 1 cut(s) 847
Ama87I CYCGRG 1 cut(s) 313
AoxI GGCC 5 cut(s) 286, 316, 506, 697, 1318
ApaI GGGCCC 1 cut(s) 510
ApaLI GTGCAC 1 cut(s) 401
ApeKI GCWGC 8 cut(s) 137, 161, 427, 479, 530, 577, 847, 854
ApoI RAATTY 4 cut(s) 107, 304, 769, 1043
AseI ATTAAT 1 cut(s) 816
AsiGI ACCGGT 1 cut(s) 499
Asp700I GAANNNNTTC 1 cut(s) 111
Asp718I GGTACC 1 cut(s) 358
AspS9I GGNCC 5 cut(s) 316, 338, 506, 507, 697
AsuHPI GGTGA 4 cut(s) 174, 234, 571, 722
AvaI CYCGRG 1 cut(s) 313
AvaII GGWCC 1 cut(s) 338
BaeGI GKGCMC 2 cut(s) 405, 510
BanI GGYRCC 1 cut(s) 358
BanII GRGCYC 2 cut(s) 510, 693
Bbv12I GWGCWC 3 cut(s) 405, 693, 1250
BbvCI CCTCAGC 1 cut(s) 858
BbvI GCAGC 8 cut(s) 149, 173, 439, 491, 517, 564, 834, 841
BccI CCATC 3 cut(s) 80, 210, 407
BciT130I CCWGG 3 cut(s) 695, 842, 1064
BclI TGATCA 1 cut(s) 535
BfaI CTAG 6 cut(s) 23, 45, 672, 776, 917, 1157
BfmI CTRYAG 1 cut(s) 465
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 3 cut(s) 695, 842, 1064
Bme18I GGWCC 1 cut(s) 338
BmeT110I CYCGRG 1 cut(s) 313
BmgT120I GGNCC 5 cut(s) 316, 338, 506, 507, 697
BmiI GGNNCC 4 cut(s) 360, 508, 657, 1001
BmrFI CCNGG 3 cut(s) 695, 842, 1064
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 5 cut(s) 148, 555, 589, 1129, 1230
BmuI ACTGGG 1 cut(s) 499
BplI GAGNNNNNCTC 2 cut(s) 553, 585
Bpu10I CCTNAGC 2 cut(s) 186, 858
BpuEI CTTGAG 2 cut(s) 193, 1150
BsaAI YACGTR 2 cut(s) 526, 878
BsaJI CCNNGG 3 cut(s) 325, 694, 1062
BsaWI WCCGGW 1 cut(s) 499
BsaXI ACNNNNNCTCC 2 cut(s) 322, 352
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 516
Bse118I RCCGGY 1 cut(s) 499
Bse1I ACTGG 2 cut(s) 494, 700
Bse3DI GCAATG 2 cut(s) 594, 785
BseBI CCWGG 3 cut(s) 695, 842, 1064
BseDI CCNNGG 3 cut(s) 325, 694, 1062
BseGI GGATG 4 cut(s) 538, 580, 934, 1144
BseLI CCNNNNNNNGG 2 cut(s) 251, 516
BseMI GCAATG 2 cut(s) 594, 785
BseMII CTCAG 2 cut(s) 177, 849
BseNI ACTGG 2 cut(s) 494, 700
BseRI GAGGAG 1 cut(s) 1012
BseSI GKGCMC 2 cut(s) 405, 510
BseXI GCAGC 8 cut(s) 149, 173, 439, 491, 517, 564, 834, 841
BseYI CCCAGC 3 cut(s) 369, 417, 924
BsgI GTGCAG 1 cut(s) 789
BshFI GGCC 5 cut(s) 288, 318, 508, 699, 1320
BshNI GGYRCC 1 cut(s) 358
BshTI ACCGGT 1 cut(s) 499
BsiHKAI GWGCWC 3 cut(s) 405, 693, 1250
BsiHKCI CYCGRG 1 cut(s) 313
BsiSI CCGG 1 cut(s) 500
BslFI GGGAC 2 cut(s) 434, 1356
BslI CCNNNNNNNGG 2 cut(s) 251, 516
BsmFI GGGAC 2 cut(s) 434, 1356
BsnI GGCC 5 cut(s) 288, 318, 508, 699, 1320
BsoBI CYCGRG 1 cut(s) 313
Bsp120I GGGCCC 1 cut(s) 506
Bsp1286I GDGCHC 4 cut(s) 405, 510, 693, 1250
Bsp143I GATC 7 cut(s) 28, 73, 535, 628, 712, 752, 1352
BspACI CCGC 4 cut(s) 190, 913, 962, 1311
BspANI GGCC 5 cut(s) 288, 318, 508, 699, 1320
BspCNI CTCAG 2 cut(s) 178, 850
BspHI TCATGA 1 cut(s) 886
BspLI GGNNCC 4 cut(s) 360, 508, 657, 1001
BspPI GGATC 3 cut(s) 36, 707, 1360
BspQI GCTCTTC 1 cut(s) 1188
BspT107I GGYRCC 1 cut(s) 358
BsrBI CCGCTC 1 cut(s) 190
BsrDI GCAATG 2 cut(s) 594, 785
BsrFI RCCGGY 1 cut(s) 499
BsrI ACTGG 2 cut(s) 494, 700
BssAI RCCGGY 1 cut(s) 499
BssECI CCNNGG 3 cut(s) 325, 694, 1062
BssMI GATC 7 cut(s) 28, 73, 535, 628, 712, 752, 1352
Bst2UI CCWGG 3 cut(s) 695, 842, 1064
Bst4CI ACNGT 3 cut(s) 400, 1252, 1285
Bst6I CTCTTC 1 cut(s) 1188
BstBAI YACGTR 2 cut(s) 526, 878
BstC8I GCNNGC 6 cut(s) 135, 445, 762, 852, 910, 922
BstDEI CTNAG 5 cut(s) 68, 186, 749, 858, 1166
BstDSI CCRYGG 1 cut(s) 325
BstF5I GGATG 4 cut(s) 538, 580, 934, 1144
BstKTI GATC 7 cut(s) 31, 76, 538, 631, 715, 755, 1355
BstMBI GATC 7 cut(s) 28, 73, 535, 628, 712, 752, 1352
BstMWI GCNNNNNNNGC 5 cut(s) 476, 905, 921, 1123, 1317
BstNI CCWGG 3 cut(s) 695, 842, 1064
BstNSI RCATGY 3 cut(s) 794, 924, 1094
BstSCI CCNGG 3 cut(s) 693, 840, 1062
BstSFI CTRYAG 1 cut(s) 465
BstSLI GKGCMC 2 cut(s) 405, 510
BstV1I GCAGC 8 cut(s) 149, 173, 439, 491, 517, 564, 834, 841
BstXI CCANNNNNNTGG 1 cut(s) 326
BsuRI GGCC 5 cut(s) 288, 318, 508, 699, 1320
BtgI CCRYGG 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 462
BtsCI GGATG 4 cut(s) 538, 580, 934, 1144
BtsIMutI CAGTG 2 cut(s) 405, 1248
Cac8I GCNNGC 6 cut(s) 135, 445, 762, 852, 910, 922
CaiI CAGNNNCTG 1 cut(s) 847
CciI TCATGA 1 cut(s) 886
Cfr10I RCCGGY 1 cut(s) 499
Cfr13I GGNCC 5 cut(s) 316, 338, 506, 507, 697
Csp6I GTAC 4 cut(s) 359, 564, 879, 977
CspAI ACCGGT 1 cut(s) 499
CviQI GTAC 4 cut(s) 359, 564, 879, 977
DdeI CTNAG 5 cut(s) 68, 186, 749, 858, 1166
DpnI GATC 7 cut(s) 30, 75, 537, 630, 714, 754, 1354
DpnII GATC 7 cut(s) 28, 73, 535, 628, 712, 752, 1352
DraIII CACNNNGTG 2 cut(s) 71, 516
Eam1104I CTCTTC 1 cut(s) 1188
EarI CTCTTC 1 cut(s) 1188
Ecl136II GAGCTC 1 cut(s) 691
Eco147I AGGCCT 1 cut(s) 288
Eco24I GRGCYC 2 cut(s) 510, 693
Eco47I GGWCC 1 cut(s) 338
Eco53kI GAGCTC 1 cut(s) 691
Eco57I CTGAAG 1 cut(s) 1001
Eco88I CYCGRG 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 691
EcoO109I RGGNCCY 2 cut(s) 338, 506
EcoRI GAATTC 2 cut(s) 304, 1043
EcoRII CCWGG 3 cut(s) 693, 840, 1062
EcoT22I ATGCAT 2 cut(s) 548, 1261
EcoT38I GRGCYC 2 cut(s) 510, 693
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 2 cut(s) 434, 1356
FbaI TGATCA 1 cut(s) 535
FokI GGATG 4 cut(s) 525, 567, 941, 1151
FriOI GRGCYC 2 cut(s) 510, 693
FspBI CTAG 6 cut(s) 23, 45, 672, 776, 917, 1157
GsaI CCCAGC 3 cut(s) 373, 421, 928
HaeIII GGCC 5 cut(s) 288, 318, 508, 699, 1320
HapII CCGG 1 cut(s) 500
HinfI GANTC 4 cut(s) 90, 197, 236, 271
HpaII CCGG 1 cut(s) 500
HphI GGTGA 4 cut(s) 174, 234, 571, 722
Hpy166II GTNNAC 4 cut(s) 65, 403, 677, 1224
Hpy188I TCNGA 5 cut(s) 33, 270, 385, 633, 1049
Hpy188III TCNNGA 4 cut(s) 210, 258, 394, 887
Hpy8I GTNNAC 4 cut(s) 65, 403, 677, 1224
HpyAV CCTTC 4 cut(s) 278, 329, 653, 1044
HpyCH4III ACNGT 3 cut(s) 400, 1252, 1285
HpyCH4IV ACGT 3 cut(s) 405, 525, 877
HpyF10VI GCNNNNNNNGC 5 cut(s) 476, 905, 921, 1123, 1317
HpyF3I CTNAG 5 cut(s) 68, 186, 749, 858, 1166
HpySE526I ACGT 3 cut(s) 405, 525, 877
KpnI GGTACC 1 cut(s) 362
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 7 cut(s) 28, 73, 535, 628, 712, 752, 1352
LguI GCTCTTC 1 cut(s) 1188
LmnI GCTCC 4 cut(s) 487, 696, 844, 999
Lsp1109I GCAGC 8 cut(s) 149, 173, 439, 491, 517, 564, 834, 841
LweI GCATC 5 cut(s) 148, 555, 589, 1129, 1230
MaeI CTAG 6 cut(s) 23, 45, 672, 776, 917, 1157
MaeII ACGT 3 cut(s) 405, 525, 877
MaeIII GTNAC 3 cut(s) 180, 521, 1263
MalI GATC 7 cut(s) 30, 75, 537, 630, 714, 754, 1354
MbiI CCGCTC 1 cut(s) 190
MboI GATC 7 cut(s) 28, 73, 535, 628, 712, 752, 1352
MboII GAAGA 6 cut(s) 293, 740, 1019, 1112, 1112, 1205
MhlI GDGCHC 4 cut(s) 405, 510, 693, 1250
MluCI AATT 7 cut(s) 107, 304, 550, 769, 1029, 1043, 1104
MlyI GAGTC 1 cut(s) 84
MnlI CCTC 8 cut(s) 19, 110, 250, 351, 646, 853, 990, 1127
Mph1103I ATGCAT 2 cut(s) 548, 1261
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 2 cut(s) 291, 816
MslI CAYNNNNRTG 5 cut(s) 231, 324, 408, 818, 869
MspI CCGG 1 cut(s) 500
MspR9I CCNGG 3 cut(s) 695, 842, 1064
MvaI CCWGG 3 cut(s) 695, 842, 1064
MwoI GCNNNNNNNGC 5 cut(s) 476, 905, 921, 1123, 1317
NdeII GATC 7 cut(s) 28, 73, 535, 628, 712, 752, 1352
NlaIV GGNNCC 4 cut(s) 360, 508, 657, 1001
NmuCI GTSAC 2 cut(s) 180, 521
NsiI ATGCAT 2 cut(s) 548, 1261
NspI RCATGY 3 cut(s) 794, 924, 1094
OliI CACNNNNGTG 1 cut(s) 231
PaeI GCATGC 1 cut(s) 924
PagI TCATGA 1 cut(s) 886
PceI AGGCCT 1 cut(s) 288
PciSI GCTCTTC 1 cut(s) 1188
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 3 cut(s) 197, 236, 271
PflMI CCANNNNNTGG 1 cut(s) 516
PfoI TCCNGGA 1 cut(s) 840
PinAI ACCGGT 1 cut(s) 499
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
Ppu21I YACGTR 2 cut(s) 526, 878
PpuMI RGGWCCY 1 cut(s) 338
PshBI ATTAAT 1 cut(s) 816
PsiI TTATAA 1 cut(s) 1070
Psp124BI GAGCTC 1 cut(s) 693
Psp5II RGGWCCY 1 cut(s) 338
Psp6I CCWGG 3 cut(s) 693, 840, 1062
PspFI CCCAGC 3 cut(s) 369, 417, 924
PspGI CCWGG 3 cut(s) 693, 840, 1062
PspN4I GGNNCC 4 cut(s) 360, 508, 657, 1001
PspOMI GGGCCC 1 cut(s) 506
PspPI GGNCC 5 cut(s) 316, 338, 506, 507, 697
PspPPI RGGWCCY 1 cut(s) 338
PstNI CAGNNNCTG 1 cut(s) 847
RsaI GTAC 4 cut(s) 360, 565, 880, 978
RsaNI GTAC 4 cut(s) 359, 564, 879, 977
RseI CAYNNNNRTG 5 cut(s) 231, 324, 408, 818, 869
SacI GAGCTC 1 cut(s) 693
SapI GCTCTTC 1 cut(s) 1188
SaqAI TTAA 2 cut(s) 291, 816
Sau3AI GATC 7 cut(s) 28, 73, 535, 628, 712, 752, 1352
Sau96I GGNCC 5 cut(s) 316, 338, 506, 507, 697
ScaI AGTACT 1 cut(s) 565
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 3 cut(s) 695, 842, 1064
SduI GDGCHC 4 cut(s) 405, 510, 693, 1250
SfaNI GCATC 5 cut(s) 148, 555, 589, 1129, 1230
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 5 cut(s) 231, 324, 408, 818, 869
SmlI CTYRAG 2 cut(s) 208, 1129
SmoI CTYRAG 2 cut(s) 208, 1129
SphI GCATGC 1 cut(s) 924
Sse9I AATT 7 cut(s) 107, 304, 550, 769, 1029, 1043, 1104
SseBI AGGCCT 1 cut(s) 288
SsiI CCGC 4 cut(s) 190, 913, 962, 1311
SspMI CTAG 6 cut(s) 23, 45, 672, 776, 917, 1157
SstI GAGCTC 1 cut(s) 693
StuI AGGCCT 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 693, 840, 1062
TaaI ACNGT 3 cut(s) 400, 1252, 1285
TaiI ACGT 3 cut(s) 408, 528, 880
TaqI TCGA 3 cut(s) 115, 274, 1187
TasI AATT 7 cut(s) 107, 304, 550, 769, 1029, 1043, 1104
TatI WGTACW 2 cut(s) 563, 976
TauI GCSGC 2 cut(s) 915, 965
TfiI GAWTC 3 cut(s) 197, 236, 271
Tru1I TTAA 2 cut(s) 291, 816
Tru9I TTAA 2 cut(s) 291, 816
TscAI CASTG 2 cut(s) 405, 1255
TseFI GTSAC 2 cut(s) 180, 521
TseI GCWGC 8 cut(s) 137, 161, 427, 479, 530, 577, 847, 854
Tsp45I GTSAC 2 cut(s) 180, 521
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 2 cut(s) 405, 1255
Van91I CCANNNNNTGG 1 cut(s) 516
VneI GTGCAC 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 338
VspI ATTAAT 1 cut(s) 816
XapI RAATTY 4 cut(s) 107, 304, 769, 1043
XceI RCATGY 3 cut(s) 794, 924, 1094
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 6 cut(s) 23, 45, 672, 776, 917, 1157
ZrmI AGTACT 1 cut(s) 565
Zsp2I ATGCAT 2 cut(s) 548, 1261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.