Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8346043.1

Orthogroup ID

OG0008225

Physical Location & Seq

Genomic Coordinates Reverse (-)

185 .. 961

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8346043.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgagcttgaaatacatttgtgaattgcatttattccaatgtgaaggacacagacatgttcttatggtgctttgtacttggatgtacttattcatgaatttggctttgtatcacaaagacagaagcctaacagtgcaacataatttgggagtttttggaggttgtggccttgtcctttctatcattactggactttttgggatcaatgttgatggaatacccggagcttcagggacaccatatgcatttggtctattttctgccgttctggtcttcttgggggttgtactaattggaattggattggtttacctcgggttaaagaaacctattgttgaagaggatgttgaaattagaaaactagagctccaagagctggttaagttgtttcagcaggacgcagtgtctcatgcacaagtacgaaaaaccgttcccagaaccaacccaactgctgcagctcgactccccaacggtgcaggttatgttctcatcagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

165

Amino Acids

18.1

Weight (kDa)

8.37

Isoelectric Point (pI)

25.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42950 AT2G42950
fragaria_vesca	FvH4_6g38330
malus_domestica	MD17G1138500.v1.1
prunus_persica	Prupe.3G173900_v2.0.a1 Prupe.3G173900_v2.0.a1 Prupe.4G074700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151641 RchiOBHm_Chr2g0151651
rosa_laevigata	RLG00000020566
rosa_multiflora	Rmu_co8346043.1_g000001 Rmu_sc0005287.1_g000001 Rmu_sc0029736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096290
rosa_rugosa	Rorug02G0427500 Rorug02G0427600
rosa_samantha	Rh2AG488400 Rh2BG501000 Rh2BG501100 Rh2CG474900 Rh2DG512100 Rh2DG512200
rosa_wichuraiana	Rw2G040040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	376
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	4 cut(s)	76, 86, 288, 420
AfiI	CCNNNNNNNGG	1 cut(s)	376
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	3 cut(s)	10, 338, 350
AhdI	GACNNNNNGTC	1 cut(s)	403
AluBI	AGCT	5 cut(s)	6, 227, 367, 376, 458
AluI	AGCT	5 cut(s)	6, 227, 367, 376, 458
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	2 cut(s)	452, 455
ApoI	RAATTY	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	222
AvaI	CYCGRG	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	439, 467
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	248
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	467
BisI	GCNGC	2 cut(s)	453, 456
BlsI	GCNGC	2 cut(s)	454, 457
Bme1390I	CCNGG	1 cut(s)	222
BmeRI	GACNNNNNGTC	1 cut(s)	403
BmeT110I	CYCGRG	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	2 cut(s)	87, 349
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	439, 467
BsgI	GTGCAG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	168
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	457
BspMI	ACCTGC	1 cut(s)	467
BspPI	GGATC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	1 cut(s)	201
Bst4CI	ACNGT	3 cut(s)	133, 430, 473
Bst6I	CTCTTC	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	87, 349
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	453
BstV1I	GCAGC	2 cut(s)	439, 467
BstV2I	GAAGAC	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	87, 349
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	2 cut(s)	138, 408
BveI	ACCTGC	1 cut(s)	467
CciI	TCATGA	1 cut(s)	93
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	4 cut(s)	75, 85, 287, 419
CviAII	CATG	3 cut(s)	56, 94, 410
CviJI	RGCY	8 cut(s)	6, 104, 126, 168, 227, 367, 376, 458
CviKI_1	RGCY	8 cut(s)	6, 104, 126, 168, 227, 367, 376, 458
CviQI	GTAC	4 cut(s)	75, 85, 287, 419
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
DriI	GACNNNNNGTC	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	333
Eam1105I	GACNNNNNGTC	1 cut(s)	403
EarI	CTCTTC	1 cut(s)	333
Ecl136II	GAGCTC	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	369
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	367
EcoT22I	ATGCAT	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	369
FaeI	CATG	3 cut(s)	59, 97, 413
FaiI	YATR	8 cut(s)	57, 65, 95, 141, 241, 243, 411, 483
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	3 cut(s)	55, 93, 409
FauNDI	CATATG	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	453, 456
FokI	GGATG	2 cut(s)	94, 356
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	2 cut(s)	453, 456
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	2 cut(s)	453, 456
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	1 cut(s)	407
Hin1II	CATG	3 cut(s)	59, 97, 413
HinfI	GANTC	1 cut(s)	462
HpaII	CCGG	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	3 cut(s)	133, 430, 473
HpyCH4V	TGCA	6 cut(s)	28, 136, 245, 413, 455, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
Hsp92II	CATG	3 cut(s)	59, 97, 413
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	2 cut(s)	224, 372
LpnPI	CCDG	8 cut(s)	174, 216, 235, 254, 362, 380, 448, 462
Lsp1109I	GCAGC	2 cut(s)	439, 467
MaeI	CTAG	1 cut(s)	362
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	2 cut(s)	265, 350
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	6 cut(s)	23, 97, 142, 291, 297, 351
MlyI	GAGTC	1 cut(s)	456
MnlI	CCTC	3 cut(s)	152, 323, 334
Mph1103I	ATGCAT	1 cut(s)	247
MseI	TTAA	2 cut(s)	320, 381
MslI	CAYNNNNRTG	1 cut(s)	54
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	373
NciI	CCSGG	1 cut(s)	222
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	3 cut(s)	59, 97, 413
NsiI	ATGCAT	1 cut(s)	247
NspI	RCATGY	1 cut(s)	59
PagI	TCATGA	1 cut(s)	93
PciI	ACATGT	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	454, 457
PleI	GAGTC	1 cut(s)	456
PpsI	GAGTC	1 cut(s)	456
PscI	ACATGT	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	457
RsaI	GTAC	4 cut(s)	76, 86, 288, 420
RsaNI	GTAC	4 cut(s)	75, 85, 287, 419
RseI	CAYNNNNRTG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	320, 381
SatI	GCNGC	2 cut(s)	453, 456
Sau3AI	GATC	1 cut(s)	201
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	9 cut(s)	8, 163, 229, 315, 331, 369, 378, 460, 481
SfcI	CTRYAG	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	6 cut(s)	23, 97, 142, 291, 297, 351
SspMI	CTAG	1 cut(s)	362
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	133, 430, 473
TaqI	TCGA	1 cut(s)	460
TasI	AATT	6 cut(s)	23, 97, 142, 291, 297, 351
TatI	WGTACW	3 cut(s)	74, 84, 286
Tru1I	TTAA	2 cut(s)	320, 381
Tru9I	TTAA	2 cut(s)	320, 381
TscAI	CASTG	2 cut(s)	138, 408
TseI	GCWGC	2 cut(s)	452, 455
TspDTI	ATGAA	2 cut(s)	82, 110
TspRI	CASTG	2 cut(s)	138, 408
Van91I	CCANNNNNTGG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	1 cut(s)	59
XspI	CTAG	1 cut(s)	362
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.