Rh2DG512200

CorA-like Mg2+ transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008225
Physical Location & Seq
Forward (+)
73653364 .. 73655634
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG512200.1

Sequence Viewer

Length: 762 bp
ATGCACGCTGGACTGTTTCATCACATTAAACAGAAAGTTTCACATTGGAATTGTCTACTGTTTTCAATGTATTACATACACAACAAATTATTTTCACTTATGAATAGGAGAACCCATGAAGATATGCATCTGTTCAGTATAATATTGAACCAAGAAATCCGAAGGTTATCAACCCAGGTTATAAGAGTGAAGTGGTCGTTACATGCAAGAGAAGAAATTGTGTTTGAGATTCTTCAGCACTTGAGAGGGGATGCCACAAGGCAGTTGCTAGAACGAATAAATAAGAGTACAAGAGAGATGATAGAAGAGCAAGAAGCAGTTCGTGGTCGCTTGTTTACTATTCAAGATGTGATGCAGAGCACTGTTCGTGCATGGTTACAGGACAGAAGCCTAACAGTGCAACATAATTTGGGAGTTTTTGGAGGTTGTGGCCTTGTCCTTTCAATCATTACTGGACTTTTTGGGATCAATGTTGATGGAATACCCGGAGCTTCAGGAACACCATATGCATTTGGCCTATTTTCTGCCGTTCTGGTCTTCTTGGGGGTTGTACTAATTGGAATTGGATTGGTTTACCTCGGGTTAAAGAAACCTATTGTTGAAGAGGATGTTGAAATTAGAAAACTAGAGCTCCAAGAGCTGGTTAAGTTGTTTCAGCAGGACGCAGTGTCTCATGCACAAGTACGAAAAACCGTTCCCAGAACCAACCCAACTGCTGCAGCTCGACTCCCCAACGGTGCAGGTTATGTTCTCATCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CorA

Protein Analysis

253

Amino Acids

28.69

Weight (kDa)

9.48

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CorA PF01544 51 - 185 4.3e-09 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 731
AccB7I CCANNNNNTGG 1 cut(s) 640
AccI GTMKAC 1 cut(s) 55
AclWI GGATC 1 cut(s) 473
AcuI CTGAAG 2 cut(s) 218, 477
AfaI GTAC 3 cut(s) 289, 552, 684
AfiI CCNNNNNNNGG 1 cut(s) 640
AgsI TTSAA 6 cut(s) 66, 148, 344, 444, 602, 614
AhdI GACNNNNNGTC 1 cut(s) 667
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 4 cut(s) 491, 631, 640, 722
AluI AGCT 4 cut(s) 491, 631, 640, 722
Alw21I GWGCWC 2 cut(s) 362, 633
Alw26I GTCTC 1 cut(s) 675
AlwI GGATC 1 cut(s) 473
Ama87I CYCGRG 1 cut(s) 578
AoxI GGCC 2 cut(s) 430, 514
ApeKI GCWGC 2 cut(s) 716, 719
Asp700I GAANNNNTTC 1 cut(s) 318
AsuC2I CCSGG 1 cut(s) 486
AvaI CYCGRG 1 cut(s) 578
BanII GRGCYC 1 cut(s) 633
BbsI GAAGAC 1 cut(s) 529
Bbv12I GWGCWC 2 cut(s) 362, 633
BbvI GCAGC 2 cut(s) 703, 731
BccI CCATC 1 cut(s) 470
BceAI ACGGC 1 cut(s) 512
BciT130I CCWGG 1 cut(s) 176
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 1 cut(s) 675
BfaI CTAG 2 cut(s) 269, 626
BfmI CTRYAG 1 cut(s) 717
BfuAI ACCTGC 1 cut(s) 731
BisI GCNGC 2 cut(s) 717, 720
BlsI GCNGC 2 cut(s) 718, 721
Bme1390I CCNGG 2 cut(s) 176, 486
BmeRI GACNNNNNGTC 1 cut(s) 667
BmeT110I CYCGRG 1 cut(s) 578
BmrFI CCNGG 2 cut(s) 176, 486
BmsI GCATC 3 cut(s) 136, 241, 342
BpiI GAAGAC 1 cut(s) 529
BpuEI CTTGAG 1 cut(s) 262
BpuMI CCSGG 1 cut(s) 486
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 174, 577
BsaXI ACNNNNNCTCC 2 cut(s) 615, 645
Bsc4I CCNNNNNNNGG 1 cut(s) 640
Bse1I ACTGG 1 cut(s) 457
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 174, 577
BseGI GGATG 2 cut(s) 256, 613
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 640
BseNI ACTGG 1 cut(s) 457
BseXI GCAGC 2 cut(s) 703, 731
BsgI GTGCAG 1 cut(s) 759
BshFI GGCC 2 cut(s) 432, 516
BsiHKAI GWGCWC 2 cut(s) 362, 633
BsiHKCI CYCGRG 1 cut(s) 578
BsiSI CCGG 1 cut(s) 486
BslI CCNNNNNNNGG 1 cut(s) 640
BsmAI GTCTC 1 cut(s) 675
BsnI GGCC 2 cut(s) 432, 516
BsoBI CYCGRG 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 362, 633
Bsp143I GATC 1 cut(s) 465
BspANI GGCC 2 cut(s) 432, 516
BspMAI CTGCAG 1 cut(s) 721
BspMI ACCTGC 1 cut(s) 731
BspPI GGATC 1 cut(s) 473
BspQI GCTCTTC 1 cut(s) 300
BsrI ACTGG 1 cut(s) 457
BssECI CCNNGG 2 cut(s) 174, 577
BssMI GATC 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 6 cut(s) 15, 60, 364, 397, 694, 737
Bst6I CTCTTC 2 cut(s) 300, 597
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 2 cut(s) 256, 613
BstKTI GATC 1 cut(s) 468
BstMAI GTCTC 1 cut(s) 675
BstMBI GATC 1 cut(s) 465
BstMWI GCNNNNNNNGC 1 cut(s) 637
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 174, 484
BstSFI CTRYAG 1 cut(s) 717
BstV1I GCAGC 2 cut(s) 703, 731
BstV2I GAAGAC 1 cut(s) 529
BsuRI GGCC 2 cut(s) 432, 516
BtsCI GGATG 2 cut(s) 256, 613
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 3 cut(s) 360, 402, 672
BveI ACCTGC 1 cut(s) 731
Cac8I GCNNGC 1 cut(s) 6
CseI GACGC 1 cut(s) 671
Csp6I GTAC 3 cut(s) 288, 551, 683
CviAII CATG 4 cut(s) 116, 203, 372, 674
CviJI RGCY 7 cut(s) 390, 432, 491, 516, 631, 640, 722
CviKI_1 RGCY 7 cut(s) 390, 432, 491, 516, 631, 640, 722
CviQI GTAC 3 cut(s) 288, 551, 683
DpnI GATC 1 cut(s) 467
DpnII GATC 1 cut(s) 465
DriI GACNNNNNGTC 1 cut(s) 667
Eam1104I CTCTTC 2 cut(s) 300, 597
Eam1105I GACNNNNNGTC 1 cut(s) 667
EarI CTCTTC 2 cut(s) 300, 597
Ecl136II GAGCTC 1 cut(s) 631
Eco24I GRGCYC 1 cut(s) 633
Eco53kI GAGCTC 1 cut(s) 631
Eco57I CTGAAG 2 cut(s) 218, 477
Eco88I CYCGRG 1 cut(s) 578
EcoICRI GAGCTC 1 cut(s) 631
EcoRII CCWGG 1 cut(s) 174
EcoT22I ATGCAT 2 cut(s) 129, 511
EcoT38I GRGCYC 1 cut(s) 633
FaeI CATG 4 cut(s) 119, 206, 375, 677
FatI CATG 4 cut(s) 115, 202, 371, 673
FauNDI CATATG 1 cut(s) 505
FblI GTMKAC 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 717, 720
FokI GGATG 2 cut(s) 263, 620
FriOI GRGCYC 1 cut(s) 633
Fsp4HI GCNGC 2 cut(s) 717, 720
FspBI CTAG 2 cut(s) 269, 626
GluI GCNGC 2 cut(s) 717, 720
HaeIII GGCC 2 cut(s) 432, 516
HapII CCGG 1 cut(s) 486
HgaI GACGC 1 cut(s) 671
Hin1II CATG 4 cut(s) 119, 206, 375, 677
HinfI GANTC 2 cut(s) 229, 726
HpaII CCGG 1 cut(s) 486
Hpy166II GTNNAC 3 cut(s) 56, 336, 574
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 2 cut(s) 344, 495
Hpy8I GTNNAC 3 cut(s) 56, 336, 574
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 6 cut(s) 15, 60, 364, 397, 694, 737
HpyF10VI GCNNNNNNNGC 1 cut(s) 637
Hsp92II CATG 4 cut(s) 119, 206, 375, 677
Kzo9I GATC 1 cut(s) 465
LguI GCTCTTC 1 cut(s) 300
LmnI GCTCC 2 cut(s) 488, 636
Lsp1109I GCAGC 2 cut(s) 703, 731
LweI GCATC 3 cut(s) 136, 241, 342
MaeI CTAG 2 cut(s) 269, 626
MaeIII GTNAC 2 cut(s) 198, 375
MalI GATC 1 cut(s) 467
MboI GATC 1 cut(s) 465
MboII GAAGA 6 cut(s) 131, 224, 224, 317, 529, 614
MhlI GDGCHC 2 cut(s) 362, 633
MluCI AATT 7 cut(s) 49, 86, 216, 406, 555, 561, 615
MlyI GAGTC 1 cut(s) 720
MnlI CCTC 4 cut(s) 239, 416, 587, 598
Mph1103I ATGCAT 2 cut(s) 129, 511
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 3 cut(s) 27, 584, 645
MspI CCGG 1 cut(s) 486
MspR9I CCNGG 2 cut(s) 176, 486
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 637
NciI CCSGG 1 cut(s) 486
NdeI CATATG 1 cut(s) 505
NdeII GATC 1 cut(s) 465
NlaIII CATG 4 cut(s) 119, 206, 375, 677
NsiI ATGCAT 2 cut(s) 129, 511
NspI RCATGY 1 cut(s) 206
PciSI GCTCTTC 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 229
PflMI CCANNNNNTGG 1 cut(s) 640
PkrI GCNGC 2 cut(s) 718, 721
PleI GAGTC 1 cut(s) 720
PpsI GAGTC 1 cut(s) 720
PsiI TTATAA 1 cut(s) 182
Psp124BI GAGCTC 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PstI CTGCAG 1 cut(s) 721
RsaI GTAC 3 cut(s) 289, 552, 684
RsaNI GTAC 3 cut(s) 288, 551, 683
SacI GAGCTC 1 cut(s) 633
SapI GCTCTTC 1 cut(s) 300
SaqAI TTAA 3 cut(s) 27, 584, 645
SatI GCNGC 2 cut(s) 717, 720
Sau3AI GATC 1 cut(s) 465
SchI GAGTC 1 cut(s) 720
ScrFI CCNGG 2 cut(s) 176, 486
SduI GDGCHC 2 cut(s) 362, 633
SfaNI GCATC 3 cut(s) 136, 241, 342
SfcI CTRYAG 1 cut(s) 717
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 7 cut(s) 49, 86, 216, 406, 555, 561, 615
SspI AATATT 1 cut(s) 144
SspMI CTAG 2 cut(s) 269, 626
SstI GAGCTC 1 cut(s) 633
StyD4I CCNGG 2 cut(s) 174, 484
TaaI ACNGT 6 cut(s) 15, 60, 364, 397, 694, 737
TaqI TCGA 1 cut(s) 724
TasI AATT 7 cut(s) 49, 86, 216, 406, 555, 561, 615
TatI WGTACW 2 cut(s) 287, 550
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 3 cut(s) 27, 584, 645
Tru9I TTAA 3 cut(s) 27, 584, 645
TscAI CASTG 3 cut(s) 367, 402, 672
TseI GCWGC 2 cut(s) 716, 719
TspDTI ATGAA 3 cut(s) 8, 116, 132
TspRI CASTG 3 cut(s) 367, 402, 672
Van91I CCANNNNNTGG 1 cut(s) 640
XceI RCATGY 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 2 cut(s) 269, 626
Zsp2I ATGCAT 2 cut(s) 129, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.