Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005287.1

Orthogroup ID

OG0008225

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2638

Gene Structure 2638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005287.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 878 bp

atgacaacccctgtgagaaataacatgatgaataagctagaggatcagaaacgccattctaatagtagtgatgtcagtccagttagtgatctttggactgatggactcatttgtgcattcgaatttgttcaagggcataaaaaggtcctgtcagcacaatatgttgtcaaaaatgcggcaaacaagcaagtttcgtcatgtgagctgaataaatcccaccactcaagaaagaatgtaaacaactcatgtgaatcctcaccaaaaagagagtcaggagttggtcggaatgttaaggaagaaggccgtaactgcaaccaggattctcactcatgccgtttatgtgggagagaagatcttcccaaaagttgttggaaaatggagtttgcaagcgacgtagatgatgttgctgtagcagatgtggcagctccttattgggaacggccagtagggccgacttggtggtgtcacgtagctgctggtcatccatgcgtcaattcatggctgagaactgctcaatggctgcatcctgctgtcagtattgctttgcgagatgaaagtaggctgataagtgatcaaatgaggcaccttctgtatgaggttcctgtaagggttgctagtggactattatttgagctcctcggccagtcagcaggtaatcgatatgctgatgaagatgacattcccattgttcttcgatcatggcaggcacagaattttctagtatcagcattgcatgttaaaagttttgcccaaaacattaatgtgttgggaatagcagaagtccaggagctgcttgctgctgagggcattacgatgccacgaactattcatgaagtcatagcacatttagcctgccggcttgcatgttgggatgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

292

Amino Acids

32.7

Weight (kDa)

6.31

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42950 AT2G42950
fragaria_vesca	FvH4_6g38330
malus_domestica	MD17G1138500.v1.1
prunus_persica	Prupe.3G173900_v2.0.a1 Prupe.3G173900_v2.0.a1 Prupe.4G074700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151641 RchiOBHm_Chr2g0151651
rosa_laevigata	RLG00000020566
rosa_multiflora	Rmu_co8346043.1_g000001 Rmu_sc0005287.1_g000001 Rmu_sc0029736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096290
rosa_rugosa	Rorug02G0427500 Rorug02G0427600
rosa_samantha	Rh2AG488400 Rh2BG501000 Rh2BG501100 Rh2CG474900 Rh2DG512100 Rh2DG512200
rosa_wichuraiana	Rw2G040040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	641
AccB1I	GGYRCC	1 cut(s)	582
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	1 cut(s)	51
AcoI	YGGCCR	2 cut(s)	440, 640
AcsI	RAATTY	2 cut(s)	122, 712
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	2 cut(s)	315, 783
AluBI	AGCT	6 cut(s)	37, 205, 425, 473, 634, 790
AluI	AGCT	6 cut(s)	37, 205, 425, 473, 634, 790
Alw21I	GWGCWC	1 cut(s)	636
AlwI	GGATC	1 cut(s)	51
AlwNI	CAGNNNCTG	1 cut(s)	790
AoxI	GGCC	4 cut(s)	301, 440, 449, 640
ApeKI	GCWGC	5 cut(s)	422, 473, 520, 790, 797
ApoI	RAATTY	2 cut(s)	122, 712
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AseI	ATTAAT	1 cut(s)	759
Asp700I	GAANNNNTTC	2 cut(s)	126, 354
AspS9I	GGNCC	2 cut(s)	145, 449
AsuHPI	GGTGA	1 cut(s)	249
AsuII	TTCGAA	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	582
BanII	GRGCYC	1 cut(s)	636
Bbv12I	GWGCWC	1 cut(s)	636
BbvCI	CCTCAGC	1 cut(s)	801
BbvI	GCAGC	5 cut(s)	434, 460, 507, 777, 784
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	3 cut(s)	288, 318, 455
BciT130I	CCWGG	2 cut(s)	317, 785
BclI	TGATCA	1 cut(s)	571
BfaI	CTAG	3 cut(s)	38, 615, 719
BfmI	CTRYAG	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	641
BglI	GCCNNNNNGGC	1 cut(s)	448
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	6 cut(s)	177, 423, 474, 521, 791, 798
BlsI	GCNGC	6 cut(s)	178, 424, 475, 522, 792, 799
Bme1390I	CCNGG	2 cut(s)	317, 785
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	145, 449
BmiI	GGNNCC	2 cut(s)	584, 600
BmrFI	CCNGG	2 cut(s)	317, 785
BmsI	GCATC	2 cut(s)	532, 804
BplI	GAGNNNNNCTC	2 cut(s)	496, 528
Bpu10I	CCTNAGC	1 cut(s)	801
Bpu14I	TTCGAA	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	208
Bsa29I	ATCGAT	1 cut(s)	658
BsaAI	YACGTR	1 cut(s)	469
BsaJI	CCNNGG	1 cut(s)	637
Bse118I	RCCGGY	1 cut(s)	855
Bse1I	ACTGG	3 cut(s)	80, 443, 643
Bse3DI	GCAATG	1 cut(s)	728
BseBI	CCWGG	2 cut(s)	317, 785
BseCI	ATCGAT	1 cut(s)	658
BseDI	CCNNGG	1 cut(s)	637
BseGI	GGATG	3 cut(s)	481, 523, 877
BseMI	GCAATG	1 cut(s)	728
BseMII	CTCAG	2 cut(s)	494, 792
BseNI	ACTGG	3 cut(s)	80, 443, 643
BseRI	GAGGAG	1 cut(s)	626
BseXI	GCAGC	5 cut(s)	434, 460, 507, 777, 784
BshFI	GGCC	4 cut(s)	303, 442, 451, 642
BshNI	GGYRCC	1 cut(s)	582
BshVI	ATCGAT	1 cut(s)	658
BsiHKAI	GWGCWC	1 cut(s)	636
BsiSI	CCGG	1 cut(s)	856
BsmI	GAATGC	1 cut(s)	116
BsnI	GGCC	4 cut(s)	303, 442, 451, 642
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp143I	GATC	5 cut(s)	43, 88, 352, 571, 695
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	4 cut(s)	303, 442, 451, 642
BspCNI	CTCAG	2 cut(s)	495, 793
BspDI	ATCGAT	1 cut(s)	658
BspHI	TCATGA	1 cut(s)	829
BspLI	GGNNCC	2 cut(s)	584, 600
BspMI	ACCTGC	1 cut(s)	641
BspPI	GGATC	1 cut(s)	51
BspT104I	TTCGAA	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	582
BsrDI	GCAATG	1 cut(s)	728
BsrFI	RCCGGY	1 cut(s)	855
BsrI	ACTGG	3 cut(s)	80, 443, 643
BssAI	RCCGGY	1 cut(s)	855
BssECI	CCNNGG	1 cut(s)	637
BssMI	GATC	5 cut(s)	43, 88, 352, 571, 695
Bst2UI	CCWGG	2 cut(s)	317, 785
BstBAI	YACGTR	1 cut(s)	469
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	6 cut(s)	388, 705, 795, 853, 857, 861
BstDEI	CTNAG	2 cut(s)	503, 801
BstF5I	GGATG	3 cut(s)	481, 523, 877
BstKTI	GATC	5 cut(s)	46, 91, 355, 574, 698
BstMBI	GATC	5 cut(s)	43, 88, 352, 571, 695
BstMWI	GCNNNNNNNGC	4 cut(s)	309, 419, 448, 848
BstNI	CCWGG	2 cut(s)	317, 785
BstNSI	RCATGY	2 cut(s)	737, 867
BstSCI	CCNGG	2 cut(s)	315, 783
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	5 cut(s)	434, 460, 507, 777, 784
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
Bsu15I	ATCGAT	1 cut(s)	658
BsuRI	GGCC	4 cut(s)	303, 442, 451, 642
BsuTUI	ATCGAT	1 cut(s)	658
BtsCI	GGATG	3 cut(s)	481, 523, 877
BveI	ACCTGC	1 cut(s)	641
Cac8I	GCNNGC	6 cut(s)	388, 705, 795, 853, 857, 861
CaiI	CAGNNNCTG	1 cut(s)	790
CciI	TCATGA	1 cut(s)	829
Cfr10I	RCCGGY	1 cut(s)	855
Cfr13I	GGNCC	2 cut(s)	145, 449
ClaI	ATCGAT	1 cut(s)	658
CseI	GACGC	1 cut(s)	478
DdeI	CTNAG	2 cut(s)	503, 801
DpnI	GATC	5 cut(s)	45, 90, 354, 573, 697
DpnII	GATC	5 cut(s)	43, 88, 352, 571, 695
EaeI	YGGCCR	2 cut(s)	440, 640
Ecl136II	GAGCTC	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	634
EcoICRI	GAGCTC	1 cut(s)	634
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	315, 783
EcoT38I	GRGCYC	1 cut(s)	636
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	6 cut(s)	177, 423, 474, 521, 791, 798
FokI	GGATG	2 cut(s)	468, 510
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	6 cut(s)	177, 423, 474, 521, 791, 798
FspBI	CTAG	3 cut(s)	38, 615, 719
GluI	GCNGC	6 cut(s)	177, 423, 474, 521, 791, 798
HaeIII	GGCC	4 cut(s)	303, 442, 451, 642
HapII	CCGG	1 cut(s)	856
HgaI	GACGC	1 cut(s)	478
HinfI	GANTC	4 cut(s)	105, 251, 269, 320
HpaII	CCGG	1 cut(s)	856
HphI	GGTGA	1 cut(s)	249
Hpy166II	GTNNAC	2 cut(s)	238, 620
Hpy188I	TCNGA	2 cut(s)	48, 285
Hpy188III	TCNNGA	3 cut(s)	225, 273, 830
Hpy8I	GTNNAC	2 cut(s)	238, 620
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	2 cut(s)	293, 596
HpyCH4IV	ACGT	2 cut(s)	393, 468
HpyCH4V	TGCA	6 cut(s)	116, 312, 386, 523, 733, 863
HpyF10VI	GCNNNNNNNGC	4 cut(s)	309, 419, 448, 848
HpyF3I	CTNAG	2 cut(s)	503, 801
HpySE526I	ACGT	2 cut(s)	393, 468
KroI	GCCGGC	1 cut(s)	855
KroNI	GCCGGC	1 cut(s)	857
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	5 cut(s)	43, 88, 352, 571, 695
LmnI	GCTCC	3 cut(s)	430, 639, 787
Lsp1109I	GCAGC	5 cut(s)	434, 460, 507, 777, 784
LweI	GCATC	2 cut(s)	532, 804
MaeI	CTAG	3 cut(s)	38, 615, 719
MaeII	ACGT	2 cut(s)	393, 468
MaeIII	GTNAC	2 cut(s)	305, 464
MalI	GATC	5 cut(s)	45, 90, 354, 573, 697
MboI	GATC	5 cut(s)	43, 88, 352, 571, 695
MboII	GAAGA	5 cut(s)	308, 347, 362, 683, 683
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	3 cut(s)	122, 493, 712
MlyI	GAGTC	2 cut(s)	99, 278
MmeI	TCCRAC	2 cut(s)	263, 350
MnlI	CCTC	6 cut(s)	34, 265, 573, 589, 647, 796
MroNI	GCCGGC	1 cut(s)	855
MroXI	GAANNNNTTC	2 cut(s)	126, 354
MseI	TTAA	3 cut(s)	291, 738, 759
MslI	CAYNNNNRTG	2 cut(s)	761, 812
MspI	CCGG	1 cut(s)	856
MspR9I	CCNGG	2 cut(s)	317, 785
Mva1269I	GAATGC	1 cut(s)	116
MvaI	CCWGG	2 cut(s)	317, 785
MwoI	GCNNNNNNNGC	4 cut(s)	309, 419, 448, 848
NaeI	GCCGGC	1 cut(s)	857
NdeII	GATC	5 cut(s)	43, 88, 352, 571, 695
NgoMIV	GCCGGC	1 cut(s)	855
NlaIV	GGNNCC	2 cut(s)	584, 600
NmeAIII	GCCGAG	1 cut(s)	618
NmuCI	GTSAC	1 cut(s)	464
NspI	RCATGY	2 cut(s)	737, 867
NspV	TTCGAA	1 cut(s)	120
PagI	TCATGA	1 cut(s)	829
PctI	GAATGC	1 cut(s)	116
PdiI	GCCGGC	1 cut(s)	857
PdmI	GAANNNNTTC	2 cut(s)	126, 354
PfeI	GAWTC	2 cut(s)	251, 320
PfoI	TCCNGGA	1 cut(s)	783
PkrI	GCNGC	6 cut(s)	178, 424, 475, 522, 792, 799
PleI	GAGTC	2 cut(s)	99, 277
PpsI	GAGTC	2 cut(s)	99, 277
Ppu21I	YACGTR	1 cut(s)	469
PpuMI	RGGWCCY	1 cut(s)	145
PshBI	ATTAAT	1 cut(s)	759
Psp124BI	GAGCTC	1 cut(s)	636
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	2 cut(s)	315, 783
PspGI	CCWGG	2 cut(s)	315, 783
PspN4I	GGNNCC	2 cut(s)	584, 600
PspPI	GGNCC	2 cut(s)	145, 449
PspPPI	RGGWCCY	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	790
PsuI	RGATCY	1 cut(s)	352
RseI	CAYNNNNRTG	2 cut(s)	761, 812
SacI	GAGCTC	1 cut(s)	636
SaqAI	TTAA	3 cut(s)	291, 738, 759
SatI	GCNGC	6 cut(s)	177, 423, 474, 521, 791, 798
Sau3AI	GATC	5 cut(s)	43, 88, 352, 571, 695
Sau96I	GGNCC	2 cut(s)	145, 449
SchI	GAGTC	2 cut(s)	99, 278
ScrFI	CCNGG	2 cut(s)	317, 785
SduI	GDGCHC	1 cut(s)	636
SfaNI	GCATC	2 cut(s)	532, 804
SfcI	CTRYAG	1 cut(s)	408
SfiI	GGCCNNNNNGGCC	1 cut(s)	448
SfuI	TTCGAA	1 cut(s)	120
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	2 cut(s)	761, 812
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	3 cut(s)	122, 493, 712
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	3 cut(s)	38, 615, 719
SstI	GAGCTC	1 cut(s)	636
StyD4I	CCNGG	2 cut(s)	315, 783
TaiI	ACGT	2 cut(s)	396, 471
TaqI	TCGA	3 cut(s)	120, 658, 694
TasI	AATT	3 cut(s)	122, 493, 712
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	251, 320
Tru1I	TTAA	3 cut(s)	291, 738, 759
Tru9I	TTAA	3 cut(s)	291, 738, 759
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	5 cut(s)	422, 473, 520, 790, 797
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	6 cut(s)	44, 486, 567, 684, 818, 846
VpaK11BI	GGWCC	1 cut(s)	145
VspI	ATTAAT	1 cut(s)	759
XapI	RAATTY	2 cut(s)	122, 712
XceI	RCATGY	2 cut(s)	737, 867
XmnI	GAANNNNTTC	2 cut(s)	126, 354
XspI	CTAG	3 cut(s)	38, 615, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.