Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008225

Physical Location & Seq

Genomic Coordinates Forward (+)

3663859 .. 3664745

Gene Structure 887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G074700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTAAGAATGTGTCCACATTGTACTTCGAGCCTGGCCAGCGCAAAACCTCCTTGTTACTTAACACGGCGGTTTGCACAGGACAGAAGCCTAAAAGTGACACATAACCTGACCGTTTTTGGTGGCTGCAGCCTCGTCCTTCCGATCATCATCGGGATATTTGGAGTGAACGTTGATGGAATACCAGCAACAAAGAGTGCACCATATGCCTTTGGAGTATTTTCAGCCATTCTCGTGGCTATAGGAGCCGTGCTAATTGCAGTTGGGTTGCTCTGTCTTGGGTTGAAAAAGCCGATCATGGAAGAGCAAGTTGAAGTTAGAAGGTTGGGCCTTCAAGAGTTGGTTAAGATGTTTCAGCATGAGGCAGAGTCTCATGCCCTGATTCGTAAGAAAGTGTCTCGGAAAAATTTACCCCACAACGGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

143

Amino Acids

15.52

Weight (kDa)

9.72

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42950 AT2G42950
fragaria_vesca	FvH4_6g38330
malus_domestica	MD17G1138500.v1.1
prunus_persica	Prupe.3G173900_v2.0.a1 Prupe.3G173900_v2.0.a1 Prupe.4G074700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151641 RchiOBHm_Chr2g0151651
rosa_laevigata	RLG00000020566
rosa_multiflora	Rmu_co8346043.1_g000001 Rmu_sc0005287.1_g000001 Rmu_sc0029736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096290
rosa_rugosa	Rorug02G0427500 Rorug02G0427600
rosa_samantha	Rh2AG488400 Rh2BG501000 Rh2BG501100 Rh2CG474900 Rh2DG512100 Rh2DG512200
rosa_wichuraiana	Rw2G040040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	70
AclI	AACGTT	1 cut(s)	171
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	406
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	419
AgsI	TTSAA	3 cut(s)	286, 314, 335
AjnI	CCWGG	1 cut(s)	33
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	2 cut(s)	375, 402
Alw44I	GTGCAC	1 cut(s)	198
AoxI	GGCC	2 cut(s)	36, 328
ApaLI	GTGCAC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	126, 129
ApoI	RAATTY	1 cut(s)	406
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	328
BaeGI	GKGCMC	1 cut(s)	202
BalI	TGGCCA	1 cut(s)	38
BauI	CACGAG	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	2 cut(s)	113, 141
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	2 cut(s)	83, 233
BciT130I	CCWGG	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	375, 402
BfmI	CTRYAG	2 cut(s)	127, 240
BisI	GCNGC	2 cut(s)	127, 130
BlsI	GCNGC	2 cut(s)	128, 131
Bme1390I	CCNGG	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse8I	GATNNNNATC	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	35
BseJI	GATNNNNATC	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	113, 141
BshFI	GGCC	2 cut(s)	38, 330
BsiHKAI	GWGCWC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	2 cut(s)	375, 402
BsnI	GGCC	2 cut(s)	38, 330
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	144, 294
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	38, 330
BspLI	GGNNCC	1 cut(s)	247
BspMAI	CTGCAG	1 cut(s)	131
BspQI	GCTCTTC	1 cut(s)	297
BssMI	GATC	2 cut(s)	144, 294
BssSI	CACGAG	1 cut(s)	233
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	147, 297
BstMAI	GTCTC	2 cut(s)	375, 402
BstMBI	GATC	2 cut(s)	144, 294
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 206, 245
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstSFI	CTRYAG	2 cut(s)	127, 240
BstSLI	GKGCMC	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	113, 141
BstXI	CCANNNNNNTGG	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	38, 330
Cac8I	GCNNGC	1 cut(s)	40
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	328
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	3 cut(s)	298, 359, 374
CviQI	GTAC	1 cut(s)	24
DpnI	GATC	2 cut(s)	146, 296
DpnII	GATC	2 cut(s)	144, 294
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	33
FaeI	CATG	3 cut(s)	301, 362, 377
FaiI	YATR	7 cut(s)	105, 205, 207, 242, 299, 360, 375
FatI	CATG	3 cut(s)	297, 358, 373
FauNDI	CATATG	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	127, 130
Fsp4HI	GCNGC	2 cut(s)	127, 130
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	2 cut(s)	127, 130
HaeIII	GGCC	2 cut(s)	38, 330
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	301, 362, 377
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	2 cut(s)	368, 382
Hpy166II	GTNNAC	3 cut(s)	17, 169, 200
Hpy188I	TCNGA	2 cut(s)	144, 402
Hpy188III	TCNNGA	2 cut(s)	154, 335
Hpy8I	GTNNAC	3 cut(s)	17, 169, 200
HpyAV	CCTTC	3 cut(s)	149, 315, 341
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	4 cut(s)	77, 129, 200, 260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 206, 245
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	301, 362, 377
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	144, 294
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	8 cut(s)	20, 47, 52, 65, 122, 198, 392, 409
Lsp1109I	GCAGC	2 cut(s)	113, 141
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	56, 97
MalI	GATC	2 cut(s)	146, 296
MboI	GATC	2 cut(s)	144, 294
MboII	GAAGA	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	202
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	2 cut(s)	255, 406
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	3 cut(s)	60, 143, 355
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	3 cut(s)	5, 62, 345
MslI	CAYNNNNRTG	1 cut(s)	233
Msp20I	TGGCCA	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	39, 206, 245
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	2 cut(s)	144, 294
NlaIII	CATG	3 cut(s)	301, 362, 377
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	2 cut(s)	128, 131
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp1406I	AACGTT	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	328
PstI	CTGCAG	1 cut(s)	131
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	233
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	5, 62, 345
SatI	GCNGC	2 cut(s)	127, 130
Sau3AI	GATC	2 cut(s)	144, 294
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	4 cut(s)	52, 111, 174, 326
SfcI	CTRYAG	2 cut(s)	127, 240
SmiMI	CAYNNNNRTG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	255, 406
SsiI	CCGC	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	29
TasI	AATT	2 cut(s)	255, 406
TatI	WGTACW	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	3 cut(s)	5, 62, 345
Tru9I	TTAA	3 cut(s)	5, 62, 345
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	2 cut(s)	126, 129
Tsp45I	GTSAC	1 cut(s)	97
VneI	GTGCAC	1 cut(s)	198
XapI	RAATTY	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.