Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008225

Physical Location & Seq

Genomic Coordinates Forward (+)

69214020 .. 69216950

Gene Structure 2931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52081

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACAACCCCTGTGAGAAATAACATGATGAATAAGCTAGAGGATCAGAAACGCCATTCTAATAGTAGTGATGTCAGTCCAGTTAGTGGTCTTTGGACTGATGGACTCATTTGTGCATTCGAATTTGTTCGAGGGCATAAAAAGGTCCTGTCAGCACAATTTGTTGTCAAAAATGCGGCAAACAAGCAAGTTTCGTCATGTGAGCTGAATAAATCCCACCACTCAAGAAAGAATGTAAACAACTCATGTGAATCCTCACCAAAAAGAGAGTCAGGAGTTGGTCGGAATGTTAAGGAAGAAGGCCGTAACTGCAACCAGGATTCTCACTCATGCCGTTTATGTGGGAGAGAAGATCTTCCCAAAAGTTGTTGGGTACCAATTGGCTGGGATAGGATTTCTGAACTGGTCCAGACAGTGCAAGTTGATGATGGCTGGGACTCGCAGAAAATGGAGTTTGCAATCGACGTAGATGATGTTTCTGTAGCAGATGTGGCAGCTCCTTACTGGGAACGGCCAGTAGGGCCGACTTGGTGGTGTCACGTAGCTGCTGGTCATCCATGCGTCAATTCATGGCTGAGAACTGCTCAATGGCTGCATCCTGCTGTCAGTATTGCTTTTAATTACATTGTCTCTTGGATGTCATTATACCATCTGTTTCACATGTACATATTGCATCGTTTTGTAAATGCAAGTAATTTTCTGTTATTTGACCAGGTTCCTGTAAGGGTTGCTAGTGGACTATTATTTGAGCTCCTCGGCCAGTCAGCAGGTGATCCATATGCTGATGAAGATGACATTCCCATTGTTCTTCGATCATGGCAGGCACAGAATTTTCTAGTATCAGCATTGCATGTTAAAAGTTCTGCCCAAAACATTAATGTGTTGGGAATAGCAGAAGTCCAGGAGCTGCTTGCTGCTGAGGGCATTACGATCCATGAACTATTCATGAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

318

Amino Acids

35.75

Weight (kDa)

6.1

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42950 AT2G42950
fragaria_vesca	FvH4_6g38330
malus_domestica	MD17G1138500.v1.1
prunus_persica	Prupe.3G173900_v2.0.a1 Prupe.3G173900_v2.0.a1 Prupe.4G074700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151641 RchiOBHm_Chr2g0151651
rosa_laevigata	RLG00000020566
rosa_multiflora	Rmu_co8346043.1_g000001 Rmu_sc0005287.1_g000001 Rmu_sc0029736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096290
rosa_rugosa	Rorug02G0427500 Rorug02G0427600
rosa_samantha	Rh2AG488400 Rh2BG501000 Rh2BG501100 Rh2CG474900 Rh2DG512100 Rh2DG512200
rosa_wichuraiana	Rw2G040040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	758
Acc36I	ACCTGC	1 cut(s)	758
Acc65I	GGTACC	1 cut(s)	373
AccB1I	GGYRCC	1 cut(s)	373
AccB7I	CCANNNNNTGG	1 cut(s)	86
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	3 cut(s)	51, 767, 925
AcoI	YGGCCR	2 cut(s)	512, 757
AcsI	RAATTY	2 cut(s)	122, 829
AfaI	GTAC	2 cut(s)	375, 665
AfiI	CCNNNNNNNGG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	660
AjnI	CCWGG	3 cut(s)	315, 711, 900
AluBI	AGCT	6 cut(s)	37, 205, 497, 545, 751, 907
AluI	AGCT	6 cut(s)	37, 205, 497, 545, 751, 907
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	1 cut(s)	634
AlwI	GGATC	3 cut(s)	51, 767, 925
AlwNI	CAGNNNCTG	1 cut(s)	907
AoxI	GGCC	4 cut(s)	301, 512, 521, 757
ApeKI	GCWGC	5 cut(s)	494, 545, 592, 907, 914
ApoI	RAATTY	2 cut(s)	122, 829
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AseI	ATTAAT	1 cut(s)	876
Asp700I	GAANNNNTTC	2 cut(s)	126, 354
Asp718I	GGTACC	1 cut(s)	373
AspS9I	GGNCC	3 cut(s)	145, 406, 521
AsuHPI	GGTGA	2 cut(s)	249, 782
AsuII	TTCGAA	1 cut(s)	120
AvaII	GGWCC	2 cut(s)	145, 406
BanI	GGYRCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	753
BbvCI	CCTCAGC	1 cut(s)	918
BbvI	GCAGC	5 cut(s)	506, 532, 579, 894, 901
BccI	CCATC	3 cut(s)	95, 422, 657
BceAI	ACGGC	3 cut(s)	288, 318, 527
BciT130I	CCWGG	3 cut(s)	317, 713, 902
BcoDI	GTCTC	1 cut(s)	634
BfaI	CTAG	3 cut(s)	38, 732, 836
BfmI	CTRYAG	1 cut(s)	480
BfuAI	ACCTGC	1 cut(s)	758
BglI	GCCNNNNNGGC	1 cut(s)	520
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	6 cut(s)	177, 495, 546, 593, 908, 915
BlsI	GCNGC	6 cut(s)	178, 496, 547, 594, 909, 916
Bme1390I	CCNGG	3 cut(s)	317, 713, 902
Bme18I	GGWCC	2 cut(s)	145, 406
BmgT120I	GGNCC	3 cut(s)	145, 406, 521
BmiI	GGNNCC	2 cut(s)	375, 717
BmrFI	CCNGG	3 cut(s)	317, 713, 902
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	2 cut(s)	604, 682
BmuI	ACTGGG	1 cut(s)	514
BplI	GAGNNNNNCTC	2 cut(s)	568, 600
Bpu10I	CCTNAGC	1 cut(s)	918
Bpu14I	TTCGAA	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	208
BsaAI	YACGTR	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	754
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	5 cut(s)	80, 408, 509, 515, 760
Bse3DI	GCAATG	1 cut(s)	845
BseBI	CCWGG	3 cut(s)	317, 713, 902
BseDI	CCNNGG	1 cut(s)	754
BseGI	GGATG	3 cut(s)	553, 595, 642
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMI	GCAATG	1 cut(s)	845
BseMII	CTCAG	2 cut(s)	566, 909
BseNI	ACTGG	5 cut(s)	80, 408, 509, 515, 760
BseRI	GAGGAG	1 cut(s)	743
BseXI	GCAGC	5 cut(s)	506, 532, 579, 894, 901
BseYI	CCCAGC	2 cut(s)	384, 432
BshFI	GGCC	4 cut(s)	303, 514, 523, 759
BshNI	GGYRCC	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	753
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	634
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	116
BsnI	GGCC	4 cut(s)	303, 514, 523, 759
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp1407I	TGTACA	1 cut(s)	663
Bsp143I	GATC	5 cut(s)	43, 352, 772, 812, 930
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	4 cut(s)	303, 514, 523, 759
BspCNI	CTCAG	2 cut(s)	567, 910
BspHI	TCATGA	1 cut(s)	945
BspLI	GGNNCC	2 cut(s)	375, 717
BspMI	ACCTGC	1 cut(s)	758
BspPI	GGATC	3 cut(s)	51, 767, 925
BspT104I	TTCGAA	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	845
BsrGI	TGTACA	1 cut(s)	663
BsrI	ACTGG	5 cut(s)	80, 408, 509, 515, 760
BssECI	CCNNGG	1 cut(s)	754
BssMI	GATC	5 cut(s)	43, 352, 772, 812, 930
Bst2UI	CCWGG	3 cut(s)	317, 713, 902
Bst4CI	ACNGT	1 cut(s)	415
BstAUI	TGTACA	1 cut(s)	663
BstBAI	YACGTR	1 cut(s)	541
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	822, 912
BstDEI	CTNAG	2 cut(s)	575, 918
BstF5I	GGATG	3 cut(s)	553, 595, 642
BstKTI	GATC	5 cut(s)	46, 355, 775, 815, 933
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	5 cut(s)	43, 352, 772, 812, 930
BstMWI	GCNNNNNNNGC	3 cut(s)	309, 491, 520
BstNI	CCWGG	3 cut(s)	317, 713, 902
BstNSI	RCATGY	2 cut(s)	664, 854
BstSCI	CCNGG	3 cut(s)	315, 711, 900
BstSFI	CTRYAG	1 cut(s)	480
BstV1I	GCAGC	5 cut(s)	506, 532, 579, 894, 901
BstX2I	RGATCY	1 cut(s)	352
BstXI	CCANNNNNNTGG	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	4 cut(s)	303, 514, 523, 759
BtsCI	GGATG	3 cut(s)	553, 595, 642
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	758
Cac8I	GCNNGC	2 cut(s)	822, 912
CaiI	CAGNNNCTG	1 cut(s)	907
CciI	TCATGA	1 cut(s)	945
Cfr13I	GGNCC	3 cut(s)	145, 406, 521
CseI	GACGC	1 cut(s)	550
CsiI	ACCWGGT	1 cut(s)	711
Csp6I	GTAC	2 cut(s)	374, 664
CviQI	GTAC	2 cut(s)	374, 664
DdeI	CTNAG	2 cut(s)	575, 918
DpnI	GATC	5 cut(s)	45, 354, 774, 814, 932
DpnII	GATC	5 cut(s)	43, 352, 772, 812, 930
EaeI	YGGCCR	2 cut(s)	512, 757
Ecl136II	GAGCTC	1 cut(s)	751
Eco24I	GRGCYC	1 cut(s)	753
Eco47I	GGWCC	2 cut(s)	145, 406
Eco53kI	GAGCTC	1 cut(s)	751
EcoICRI	GAGCTC	1 cut(s)	751
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	3 cut(s)	315, 711, 900
EcoT38I	GRGCYC	1 cut(s)	753
FaqI	GGGAC	1 cut(s)	449
FauNDI	CATATG	1 cut(s)	778
Fnu4HI	GCNGC	6 cut(s)	177, 495, 546, 593, 908, 915
FokI	GGATG	3 cut(s)	540, 582, 649
FriOI	GRGCYC	1 cut(s)	753
Fsp4HI	GCNGC	6 cut(s)	177, 495, 546, 593, 908, 915
FspBI	CTAG	3 cut(s)	38, 732, 836
GluI	GCNGC	6 cut(s)	177, 495, 546, 593, 908, 915
GsaI	CCCAGC	2 cut(s)	388, 436
HaeIII	GGCC	4 cut(s)	303, 514, 523, 759
HgaI	GACGC	1 cut(s)	550
HinfI	GANTC	5 cut(s)	105, 251, 269, 320, 437
HphI	GGTGA	2 cut(s)	249, 782
Hpy166II	GTNNAC	2 cut(s)	238, 737
Hpy188I	TCNGA	3 cut(s)	48, 285, 400
Hpy188III	TCNNGA	4 cut(s)	225, 273, 409, 946
Hpy8I	GTNNAC	2 cut(s)	238, 737
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	2 cut(s)	465, 540
HpyCH4V	TGCA	8 cut(s)	116, 312, 418, 458, 595, 673, 689, 850
HpyF10VI	GCNNNNNNNGC	3 cut(s)	309, 491, 520
HpyF3I	CTNAG	2 cut(s)	575, 918
HpySE526I	ACGT	2 cut(s)	465, 540
KpnI	GGTACC	1 cut(s)	377
Kzo9I	GATC	5 cut(s)	43, 352, 772, 812, 930
LmnI	GCTCC	3 cut(s)	502, 756, 904
Lsp1109I	GCAGC	5 cut(s)	506, 532, 579, 894, 901
LweI	GCATC	2 cut(s)	604, 682
MabI	ACCWGGT	1 cut(s)	711
MaeI	CTAG	3 cut(s)	38, 732, 836
MaeII	ACGT	2 cut(s)	465, 540
MaeIII	GTNAC	2 cut(s)	305, 536
MalI	GATC	5 cut(s)	45, 354, 774, 814, 932
MboI	GATC	5 cut(s)	43, 352, 772, 812, 930
MboII	GAAGA	5 cut(s)	308, 347, 362, 800, 800
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	7 cut(s)	122, 158, 378, 565, 619, 694, 829
MlyI	GAGTC	3 cut(s)	99, 278, 431
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	5 cut(s)	34, 125, 265, 764, 913
MroXI	GAANNNNTTC	2 cut(s)	126, 354
MseI	TTAA	4 cut(s)	291, 618, 855, 876
MslI	CAYNNNNRTG	1 cut(s)	878
MspR9I	CCNGG	3 cut(s)	317, 713, 902
MunI	CAATTG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	116
MvaI	CCWGG	3 cut(s)	317, 713, 902
MwoI	GCNNNNNNNGC	3 cut(s)	309, 491, 520
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	5 cut(s)	43, 352, 772, 812, 930
NlaIV	GGNNCC	2 cut(s)	375, 717
NmeAIII	GCCGAG	1 cut(s)	735
NmuCI	GTSAC	1 cut(s)	536
NspI	RCATGY	2 cut(s)	664, 854
NspV	TTCGAA	1 cut(s)	120
PagI	TCATGA	1 cut(s)	945
PaqCI	CACCTGC	1 cut(s)	758
PciI	ACATGT	1 cut(s)	660
PctI	GAATGC	1 cut(s)	116
PdmI	GAANNNNTTC	2 cut(s)	126, 354
PfeI	GAWTC	2 cut(s)	251, 320
PflMI	CCANNNNNTGG	1 cut(s)	86
PfoI	TCCNGGA	1 cut(s)	900
PkrI	GCNGC	6 cut(s)	178, 496, 547, 594, 909, 916
PleI	GAGTC	3 cut(s)	99, 277, 431
PpsI	GAGTC	3 cut(s)	99, 277, 431
Ppu21I	YACGTR	1 cut(s)	541
PpuMI	RGGWCCY	1 cut(s)	145
PscI	ACATGT	1 cut(s)	660
PshBI	ATTAAT	1 cut(s)	876
Psp124BI	GAGCTC	1 cut(s)	753
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	3 cut(s)	315, 711, 900
PspFI	CCCAGC	2 cut(s)	384, 432
PspGI	CCWGG	3 cut(s)	315, 711, 900
PspN4I	GGNNCC	2 cut(s)	375, 717
PspPI	GGNCC	3 cut(s)	145, 406, 521
PspPPI	RGGWCCY	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	907
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	2 cut(s)	375, 665
RsaNI	GTAC	2 cut(s)	374, 664
RseI	CAYNNNNRTG	1 cut(s)	878
SacI	GAGCTC	1 cut(s)	753
SaqAI	TTAA	4 cut(s)	291, 618, 855, 876
SatI	GCNGC	6 cut(s)	177, 495, 546, 593, 908, 915
Sau3AI	GATC	5 cut(s)	43, 352, 772, 812, 930
Sau96I	GGNCC	3 cut(s)	145, 406, 521
SchI	GAGTC	3 cut(s)	99, 278, 431
ScrFI	CCNGG	3 cut(s)	317, 713, 902
SduI	GDGCHC	1 cut(s)	753
SexAI	ACCWGGT	1 cut(s)	711
SfaNI	GCATC	2 cut(s)	604, 682
SfcI	CTRYAG	1 cut(s)	480
SfiI	GGCCNNNNNGGCC	1 cut(s)	520
SfuI	TTCGAA	1 cut(s)	120
SinI	GGWCC	2 cut(s)	145, 406
SmiMI	CAYNNNNRTG	1 cut(s)	878
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	7 cut(s)	122, 158, 378, 565, 619, 694, 829
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	3 cut(s)	38, 732, 836
SstI	GAGCTC	1 cut(s)	753
StyD4I	CCNGG	3 cut(s)	315, 711, 900
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	2 cut(s)	468, 543
TaqI	TCGA	4 cut(s)	120, 130, 462, 811
TasI	AATT	7 cut(s)	122, 158, 378, 565, 619, 694, 829
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	251, 320
Tru1I	TTAA	4 cut(s)	291, 618, 855, 876
Tru9I	TTAA	4 cut(s)	291, 618, 855, 876
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	5 cut(s)	494, 545, 592, 907, 914
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	5 cut(s)	44, 558, 801, 934, 951
TspRI	CASTG	1 cut(s)	420
Van91I	CCANNNNNTGG	1 cut(s)	86
VpaK11BI	GGWCC	2 cut(s)	145, 406
VspI	ATTAAT	1 cut(s)	876
XapI	RAATTY	2 cut(s)	122, 829
XceI	RCATGY	2 cut(s)	664, 854
XmnI	GAANNNNTTC	2 cut(s)	126, 354
XspI	CTAG	3 cut(s)	38, 732, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.