Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008225

Physical Location & Seq

Genomic Coordinates Forward (+)

73651187 .. 73653034

Gene Structure 1848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG512100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGACAACCCCTGTGAGAAATAACATGATGAATAAGCTAGAGGATCAGAAACGCCATTCTAATAGTAGTGATGTCAGTCCAGTTAGTGATCTTTGGACTGATGGACTCATTTGTGCATTCGAATTTGTTCGAGGGCATAAAAAGGTCCTGTCAGCACAATTTGTTGTCAAAAATGCGGCAAACAAGCAAGTTTCGTCATGTGAGCTGAATAAATCCCACCACTCAAGAAAGAATGTAAACAACTCATGTGAATCCTCACCAAAAAGAGAGTCAGGAGTTGGTCGGAATGTTAAGGAAGAAGGCCGTAACTGCAACCAGGATTCTCACTCATGCCGTTTATGTGGGAGAGAAGATCTTCCCAAAAGTTGTTGGGTACCAATTGGCTGGGATAGGATTTCTGAACTGGTCCAGACAGTGCAAGTTGATGATGGCTGGGACTCGCAGAAAATGGAGTTTGCAATCGACGTAGATGATGTTTCTGTAGCAGATGTGGCAGCTCCTTACTGGGAACGGCCAGTAGGGCCGACTTGGTGGTGTCACGTAGCTGCTGGTCATCCATGCGTCAATTCATGGCTGAGAACTGCTCAATGGCTGCATCCTGCTGTCAGTATTGCTTTGCGAGATGAAAGTAGGCTGATAAGTGATCAAATGAGGCACCTTCTGTATGAGGTTCCTGTAAGGGTTGCTAGTGGACTATTATTTGAGCTCCTCGGCCAGTCAGCAGGTGATCCATATGCTGATGAAGATGACATTCCCATTGTTCTTCGATCATGGCAGGCACAGAATTTTCTAGTATCAGCATTGCATGTTAAAAGTTCTGCCCAAAACATTAATGTGTTGGGAATAGCAGAAGTCCAGGAGCTGCTTGCTGCTGAGGGCATTACGATCCATGAACTATTCATGAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

303

Amino Acids

33.91

Weight (kDa)

5.77

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42950 AT2G42950
fragaria_vesca	FvH4_6g38330
malus_domestica	MD17G1138500.v1.1
prunus_persica	Prupe.3G173900_v2.0.a1 Prupe.3G173900_v2.0.a1 Prupe.4G074700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151641 RchiOBHm_Chr2g0151651
rosa_laevigata	RLG00000020566
rosa_multiflora	Rmu_co8346043.1_g000001 Rmu_sc0005287.1_g000001 Rmu_sc0029736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096290
rosa_rugosa	Rorug02G0427500 Rorug02G0427600
rosa_samantha	Rh2AG488400 Rh2BG501000 Rh2BG501100 Rh2CG474900 Rh2DG512100 Rh2DG512200
rosa_wichuraiana	Rw2G040040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	713
Acc36I	ACCTGC	1 cut(s)	713
Acc65I	GGTACC	1 cut(s)	373
AccB1I	GGYRCC	2 cut(s)	373, 654
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	3 cut(s)	51, 722, 880
AcoI	YGGCCR	2 cut(s)	512, 712
AcsI	RAATTY	2 cut(s)	122, 784
AfaI	GTAC	1 cut(s)	375
AjnI	CCWGG	2 cut(s)	315, 855
AluBI	AGCT	6 cut(s)	37, 205, 497, 545, 706, 862
AluI	AGCT	6 cut(s)	37, 205, 497, 545, 706, 862
Alw21I	GWGCWC	1 cut(s)	708
AlwI	GGATC	3 cut(s)	51, 722, 880
AlwNI	CAGNNNCTG	1 cut(s)	862
AoxI	GGCC	4 cut(s)	301, 512, 521, 712
ApeKI	GCWGC	5 cut(s)	494, 545, 592, 862, 869
ApoI	RAATTY	2 cut(s)	122, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AseI	ATTAAT	1 cut(s)	831
Asp700I	GAANNNNTTC	2 cut(s)	126, 354
Asp718I	GGTACC	1 cut(s)	373
AspS9I	GGNCC	3 cut(s)	145, 406, 521
AsuHPI	GGTGA	2 cut(s)	249, 737
AsuII	TTCGAA	1 cut(s)	120
AvaII	GGWCC	2 cut(s)	145, 406
BanI	GGYRCC	2 cut(s)	373, 654
BanII	GRGCYC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	708
BbvCI	CCTCAGC	1 cut(s)	873
BbvI	GCAGC	5 cut(s)	506, 532, 579, 849, 856
BccI	CCATC	2 cut(s)	95, 422
BceAI	ACGGC	3 cut(s)	288, 318, 527
BciT130I	CCWGG	2 cut(s)	317, 857
BclI	TGATCA	1 cut(s)	643
BfaI	CTAG	3 cut(s)	38, 687, 791
BfmI	CTRYAG	1 cut(s)	480
BfuAI	ACCTGC	1 cut(s)	713
BglI	GCCNNNNNGGC	1 cut(s)	520
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	6 cut(s)	177, 495, 546, 593, 863, 870
BlsI	GCNGC	6 cut(s)	178, 496, 547, 594, 864, 871
Bme1390I	CCNGG	2 cut(s)	317, 857
Bme18I	GGWCC	2 cut(s)	145, 406
BmgT120I	GGNCC	3 cut(s)	145, 406, 521
BmiI	GGNNCC	3 cut(s)	375, 656, 672
BmrFI	CCNGG	2 cut(s)	317, 857
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	1 cut(s)	604
BmuI	ACTGGG	1 cut(s)	514
BplI	GAGNNNNNCTC	2 cut(s)	568, 600
Bpu10I	CCTNAGC	1 cut(s)	873
Bpu14I	TTCGAA	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	208
BsaAI	YACGTR	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	709
Bse1I	ACTGG	5 cut(s)	80, 408, 509, 515, 715
Bse3DI	GCAATG	1 cut(s)	800
BseBI	CCWGG	2 cut(s)	317, 857
BseDI	CCNNGG	1 cut(s)	709
BseGI	GGATG	2 cut(s)	553, 595
BseMI	GCAATG	1 cut(s)	800
BseMII	CTCAG	2 cut(s)	566, 864
BseNI	ACTGG	5 cut(s)	80, 408, 509, 515, 715
BseRI	GAGGAG	1 cut(s)	698
BseXI	GCAGC	5 cut(s)	506, 532, 579, 849, 856
BseYI	CCCAGC	2 cut(s)	384, 432
BshFI	GGCC	4 cut(s)	303, 514, 523, 714
BshNI	GGYRCC	2 cut(s)	373, 654
BsiHKAI	GWGCWC	1 cut(s)	708
BslFI	GGGAC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	116
BsnI	GGCC	4 cut(s)	303, 514, 523, 714
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp143I	GATC	7 cut(s)	43, 88, 352, 643, 727, 767, 885
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	4 cut(s)	303, 514, 523, 714
BspCNI	CTCAG	2 cut(s)	567, 865
BspHI	TCATGA	1 cut(s)	900
BspLI	GGNNCC	3 cut(s)	375, 656, 672
BspMI	ACCTGC	1 cut(s)	713
BspPI	GGATC	3 cut(s)	51, 722, 880
BspT104I	TTCGAA	1 cut(s)	120
BspT107I	GGYRCC	2 cut(s)	373, 654
BsrDI	GCAATG	1 cut(s)	800
BsrI	ACTGG	5 cut(s)	80, 408, 509, 515, 715
BssECI	CCNNGG	1 cut(s)	709
BssMI	GATC	7 cut(s)	43, 88, 352, 643, 727, 767, 885
Bst2UI	CCWGG	2 cut(s)	317, 857
Bst4CI	ACNGT	1 cut(s)	415
BstBAI	YACGTR	1 cut(s)	541
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	777, 867
BstDEI	CTNAG	2 cut(s)	575, 873
BstF5I	GGATG	2 cut(s)	553, 595
BstKTI	GATC	7 cut(s)	46, 91, 355, 646, 730, 770, 888
BstMBI	GATC	7 cut(s)	43, 88, 352, 643, 727, 767, 885
BstMWI	GCNNNNNNNGC	3 cut(s)	309, 491, 520
BstNI	CCWGG	2 cut(s)	317, 857
BstNSI	RCATGY	1 cut(s)	809
BstSCI	CCNGG	2 cut(s)	315, 855
BstSFI	CTRYAG	1 cut(s)	480
BstV1I	GCAGC	5 cut(s)	506, 532, 579, 849, 856
BstX2I	RGATCY	1 cut(s)	352
BstXI	CCANNNNNNTGG	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	4 cut(s)	303, 514, 523, 714
BtsCI	GGATG	2 cut(s)	553, 595
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	713
Cac8I	GCNNGC	2 cut(s)	777, 867
CaiI	CAGNNNCTG	1 cut(s)	862
CciI	TCATGA	1 cut(s)	900
Cfr13I	GGNCC	3 cut(s)	145, 406, 521
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	374
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	2 cut(s)	575, 873
DpnI	GATC	7 cut(s)	45, 90, 354, 645, 729, 769, 887
DpnII	GATC	7 cut(s)	43, 88, 352, 643, 727, 767, 885
EaeI	YGGCCR	2 cut(s)	512, 712
Ecl136II	GAGCTC	1 cut(s)	706
Eco24I	GRGCYC	1 cut(s)	708
Eco47I	GGWCC	2 cut(s)	145, 406
Eco53kI	GAGCTC	1 cut(s)	706
EcoICRI	GAGCTC	1 cut(s)	706
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	315, 855
EcoT38I	GRGCYC	1 cut(s)	708
FaqI	GGGAC	1 cut(s)	449
FauNDI	CATATG	1 cut(s)	733
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	6 cut(s)	177, 495, 546, 593, 863, 870
FokI	GGATG	2 cut(s)	540, 582
FriOI	GRGCYC	1 cut(s)	708
Fsp4HI	GCNGC	6 cut(s)	177, 495, 546, 593, 863, 870
FspBI	CTAG	3 cut(s)	38, 687, 791
GluI	GCNGC	6 cut(s)	177, 495, 546, 593, 863, 870
GsaI	CCCAGC	2 cut(s)	388, 436
HaeIII	GGCC	4 cut(s)	303, 514, 523, 714
HgaI	GACGC	1 cut(s)	550
HinfI	GANTC	5 cut(s)	105, 251, 269, 320, 437
HphI	GGTGA	2 cut(s)	249, 737
Hpy166II	GTNNAC	2 cut(s)	238, 692
Hpy188I	TCNGA	3 cut(s)	48, 285, 400
Hpy188III	TCNNGA	4 cut(s)	225, 273, 409, 901
Hpy8I	GTNNAC	2 cut(s)	238, 692
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	2 cut(s)	293, 668
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	2 cut(s)	465, 540
HpyCH4V	TGCA	6 cut(s)	116, 312, 418, 458, 595, 805
HpyF10VI	GCNNNNNNNGC	3 cut(s)	309, 491, 520
HpyF3I	CTNAG	2 cut(s)	575, 873
HpySE526I	ACGT	2 cut(s)	465, 540
KpnI	GGTACC	1 cut(s)	377
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	7 cut(s)	43, 88, 352, 643, 727, 767, 885
LmnI	GCTCC	3 cut(s)	502, 711, 859
Lsp1109I	GCAGC	5 cut(s)	506, 532, 579, 849, 856
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	3 cut(s)	38, 687, 791
MaeII	ACGT	2 cut(s)	465, 540
MaeIII	GTNAC	2 cut(s)	305, 536
MalI	GATC	7 cut(s)	45, 90, 354, 645, 729, 769, 887
MboI	GATC	7 cut(s)	43, 88, 352, 643, 727, 767, 885
MboII	GAAGA	5 cut(s)	308, 347, 362, 755, 755
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	708
MluCI	AATT	5 cut(s)	122, 158, 378, 565, 784
MlyI	GAGTC	3 cut(s)	99, 278, 431
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	7 cut(s)	34, 125, 265, 645, 661, 719, 868
MroXI	GAANNNNTTC	2 cut(s)	126, 354
MseI	TTAA	3 cut(s)	291, 810, 831
MslI	CAYNNNNRTG	1 cut(s)	833
MspR9I	CCNGG	2 cut(s)	317, 857
MunI	CAATTG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	116
MvaI	CCWGG	2 cut(s)	317, 857
MwoI	GCNNNNNNNGC	3 cut(s)	309, 491, 520
NdeI	CATATG	1 cut(s)	733
NdeII	GATC	7 cut(s)	43, 88, 352, 643, 727, 767, 885
NlaIV	GGNNCC	3 cut(s)	375, 656, 672
NmeAIII	GCCGAG	1 cut(s)	690
NmuCI	GTSAC	1 cut(s)	536
NspI	RCATGY	1 cut(s)	809
NspV	TTCGAA	1 cut(s)	120
PagI	TCATGA	1 cut(s)	900
PaqCI	CACCTGC	1 cut(s)	713
PctI	GAATGC	1 cut(s)	116
PdmI	GAANNNNTTC	2 cut(s)	126, 354
PfeI	GAWTC	2 cut(s)	251, 320
PfoI	TCCNGGA	1 cut(s)	855
PkrI	GCNGC	6 cut(s)	178, 496, 547, 594, 864, 871
PleI	GAGTC	3 cut(s)	99, 277, 431
PpsI	GAGTC	3 cut(s)	99, 277, 431
Ppu21I	YACGTR	1 cut(s)	541
PpuMI	RGGWCCY	1 cut(s)	145
PshBI	ATTAAT	1 cut(s)	831
Psp124BI	GAGCTC	1 cut(s)	708
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	2 cut(s)	315, 855
PspFI	CCCAGC	2 cut(s)	384, 432
PspGI	CCWGG	2 cut(s)	315, 855
PspN4I	GGNNCC	3 cut(s)	375, 656, 672
PspPI	GGNCC	3 cut(s)	145, 406, 521
PspPPI	RGGWCCY	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	862
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	833
SacI	GAGCTC	1 cut(s)	708
SaqAI	TTAA	3 cut(s)	291, 810, 831
SatI	GCNGC	6 cut(s)	177, 495, 546, 593, 863, 870
Sau3AI	GATC	7 cut(s)	43, 88, 352, 643, 727, 767, 885
Sau96I	GGNCC	3 cut(s)	145, 406, 521
SchI	GAGTC	3 cut(s)	99, 278, 431
ScrFI	CCNGG	2 cut(s)	317, 857
SduI	GDGCHC	1 cut(s)	708
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	1 cut(s)	480
SfiI	GGCCNNNNNGGCC	1 cut(s)	520
SfuI	TTCGAA	1 cut(s)	120
SinI	GGWCC	2 cut(s)	145, 406
SmiMI	CAYNNNNRTG	1 cut(s)	833
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	5 cut(s)	122, 158, 378, 565, 784
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	3 cut(s)	38, 687, 791
SstI	GAGCTC	1 cut(s)	708
StyD4I	CCNGG	2 cut(s)	315, 855
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	2 cut(s)	468, 543
TaqI	TCGA	4 cut(s)	120, 130, 462, 766
TasI	AATT	5 cut(s)	122, 158, 378, 565, 784
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	251, 320
Tru1I	TTAA	3 cut(s)	291, 810, 831
Tru9I	TTAA	3 cut(s)	291, 810, 831
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	5 cut(s)	494, 545, 592, 862, 869
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	6 cut(s)	44, 558, 639, 756, 889, 906
TspRI	CASTG	1 cut(s)	420
VpaK11BI	GGWCC	2 cut(s)	145, 406
VspI	ATTAAT	1 cut(s)	831
XapI	RAATTY	2 cut(s)	122, 784
XceI	RCATGY	1 cut(s)	809
XmnI	GAANNNNTTC	2 cut(s)	126, 354
XspI	CTAG	3 cut(s)	38, 687, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.