FvH4_6g38530

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011987
Physical Location & Seq
Forward (+)
30481787 .. 30486306
4520 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38530.t1

Sequence Viewer

Length: 2460 bp
ATGGCTCATTCTCCAGCCTCCACCGCCTCTCCACTCCAACGCCTCTCCACCTTCAAAGCCACAACCACCACCCCCTCCGCCGCGTCCCCACTCGAAACCTTCGCCGCCGATCCCATTTTCTCGGCCTTCCTCTCCCCCTCCTTCTCCTCCACCTCCTTCTCCTCCGCCGCACTCTCCTCCGGCTCCCCCGCCTCCACCGCCGAGAAGCTCCAGCACGCCATCCGCCTCCTCGAGTCCCAGCTCCGCTCCGAGGTCCTCTCCCGCCACTCCGACCTCCTCTCCCAGCTCTCCTCCCTCCAGCACGCCGACCACGCCCTCTCCACCGTCCGATCCTCCGTCCACTCCCTCCAGTCCTCCCTCCGCCACACCCGATCCGAGCTCTCCGACCCCCTCCGCTCCATCACCGCCCTCACTCTCCAGCTCTCCAACCTCCACGCCACCTCCGAGCTCCTCCACCACACCCTCCGCACCCTCCGCCTCTCCAAAAAGCTCCGCGACCTCGCCGCCGACCCGGAGAAGATCGATCTCGCCAAGGCCGCGCAGCTGCATTGCGAGATCTTGGCGATCTACGACGAGTACGACCTCGCCGGCATCGATGTCGTCGAGGAGGAGCTCGCCTGGGTCAGGGAGACCGGCGACACCTTGCGCGGCGAGGCCATGAAGGCCTTGGAGCTAGGGATGGAGGGATTGAACCAAGGGGAGGTGGCGATCGGGTTGCAGGTGTTTTACAATCTAGGAGAGCTGAAGCAAGCTATGGAGCAGTTGATTGGCAAGTATAAAGGTTTGGGAGTGAAGAGTATCAGTGTGGCATTGGATATGAAGGCCATTTCGGGGTCGGTGGGCAGCGGGTTTGGCCCTGGAGGTATTAGAGGGAGTGGGACGCCACAGATTGGCGGCGGAGCTAAGGCCAGGGATGGACTTTGGCAGAGAATGGGGACGTGTATGGATCAGTTGCATTCCATCATGGTGGCTGTGTGGCATTTGCAGAAGGTGTTGTCTAAGAAACGGGATCCTTTTACGCATGTGTTGCTGCTTGATGAAGTTATTAAGGAAGGGGAGCCTATGATAACAGATAGAGTGTGGGAGGCCCTTGTGAAGGCTTTTGCCAACCAAATGAAGTCAGCCTTTTCTGCATCAACTTTTGTGAAAGAGATATTCACCATGGGGTATCCAAAGCTTTTTGCCATGATAGATAACCTTCTTGAAAGAATTTCACGTGACACAGATGTGAAAGGGGTTCTACCAGCTATTACTTCAGAGGGAAAAGAACAACTGGTTGCAGCTATTGAAATTTTCCAGACTTCATTCTTGGCTCTCTGCCATAGTCGTCTGTCAGATCTTGTGAATAATGTATTTCCTGTATCCAGCCGTGGGAGTGTTCCCTCTAAAGACCATATATCAAGAATCATTTCACGGATTCAGGAAGAAATAGAGTCTGTTCAGTTGGATGCGCGCCTGACTCTTCTTGTATTGCGTGAGATTGGCAAGGTTCTTCTACTACTTGCTGAACGAGCTGAATTCCAGATATCAGCTGGTCCCGAATCACGGCAAGTCAATGGTCCTGCAACTCCTGCCCAACTCAAGAACTTCGTGCTATGTCAGCATCTCCAAGAAATTCATACACGCATATCGTCAATGATTAGTGGACTGCCCACTATTGCCTCAGATGTGCTGTCTCCGGCATTAGGTGCAATATATGGGGTTGCTTGTGATTCAGTGACAACCTTGTTCCAAGCCATGCTTGATCGTCTTGAATCTTGCATCTTGCAAATTCATGAACAGAAGTTTGGTGTGCTAGGCATGGATGCTGCTATGGATAACAATGCATCACCTTACATGGAGGAGTTGCAGAAGTGCATTCTTCACTTCCGGAGTGAGTTCCTATCCAGGCTGTTGCCTTCAAAAACTGCAACAGTGGGAGTAGAGACCATATGCACTAGACTTGTTAGGAGCATGGCTGCACGTGTTTTAATATTTTTTATCAGGCACGCTTCTCTTGTCAGACCCCTTTCAGAATCAGGGAAGCTAAGGATGGCTAGGGACATGGCTGAGCTGGAATTAGCTGTAGGCCAGAATTTGTTTCCAGTAGAGCAACTTGGTGCACCATATAGAGCTCTTCGAGCATTTCGGCCTCTCATTTTCTTGGACACATCCCAACTAGGAGCTTCTCCACTTCTTCAAGATCTACCACCAAGTGTCATACTTCACCATCTATACTCCCGAGGTCCCGATGAATTGCAATCACCACTGCAAAGGAACAAACTAACACCTCTGCAGTACTCCTTGTGGCTAGATTCTCAAGGAGAGGACCAGGTTTGGAAGGGTATTAAGGCAACACTAGATGACTATGCTACACATGTAAGGGCCAGAGGAGACAAAGAGTTTAGCCCTGTGTATCCTCTAATGCTTCGATTGGGGTCATTGTTGACAGAAAATGCTCCTGAAACCCAAAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COG5

Protein Analysis

820

Amino Acids

89.82

Weight (kDa)

6.49

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG5_N PF10392 41 - 164 3e-25 Conserved oligomeric Golgi complex subunit 5, N-terminal
COG5_C PF20649 195 - 400 4.2e-51 Conserved oligomeric Golgi complex subunit 5, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67930
fragaria_vesca FvH4_6g38530
malus_domestica MD09G1149900.v1.1 MD17G1137000.v1.1
prunus_persica Prupe.3G175300_v2.0.a1 Prupe.3G175300_v2.0.a1
pyrus_communis pycom09g06940 pycom17g13060
rosa_chinensis RchiOBHm_Chr2g0151781
rosa_laevigata RLG00000020581
rosa_multiflora Rmu_co8286875.1_g000001
rosa_roxburghii Rroxscaffold_2G00096160
rosa_rugosa Rorug02G0429000
rosa_samantha Rh2AG489800 Rh2BG502400 Rh2CG476100 Rh2DG513500
rosa_wichuraiana Rw2G040160 Rw2G040270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 709
Acc36I ACCTGC 1 cut(s) 709
AccB7I CCANNNNNTGG 1 cut(s) 890
AccBSI CCGCTC 2 cut(s) 246, 396
AccII CGCG 5 cut(s) 83, 495, 539, 648, 1453
AccIII TCCGGA 1 cut(s) 1869
AclWI GGATC 6 cut(s) 104, 324, 366, 954, 1004, 1017
AcsI RAATTY 6 cut(s) 1209, 1290, 1517, 1614, 1770, 2074
AcuI CTGAAG 2 cut(s) 764, 1239
AcvI CACGTG 2 cut(s) 1217, 1964
AcyI GRCGYC 1 cut(s) 881
AdeI CACNNNGTG 1 cut(s) 2195
AfaI GTAC 2 cut(s) 578, 2279
AfiI CCNNNNNNNGG 9 cut(s) 250, 624, 700, 831, 890, 1096, 1371, 1545, 1685
AflIII ACRYGT 3 cut(s) 938, 1963, 2356
AgsI TTSAA 7 cut(s) 55, 691, 1205, 1289, 1754, 1902, 2180
AjiI CACGTC 1 cut(s) 939
AjnI CCWGG 5 cut(s) 617, 856, 908, 1886, 2310
AjuI GAANNNNNNNTTGG 2 cut(s) 1770, 1802
AleI CACNNNNGTG 1 cut(s) 1226
Alw21I GWGCWC 5 cut(s) 381, 450, 615, 2104, 2116
Alw26I GTCTC 4 cut(s) 623, 1680, 1919, 2367
Alw44I GTGCAC 1 cut(s) 2100
AlwI GGATC 6 cut(s) 104, 324, 366, 954, 1004, 1017
Ama87I CYCGRG 2 cut(s) 230, 2220
Aor13HI TCCGGA 1 cut(s) 1869
ApaLI GTGCAC 1 cut(s) 2100
ApeKI GCWGC 7 cut(s) 541, 544, 843, 1030, 1280, 1808, 1958
ApoI RAATTY 6 cut(s) 1209, 1290, 1517, 1614, 1770, 2074
Asp700I GAANNNNTTC 1 cut(s) 1408
AspLEI GCGC 4 cut(s) 541, 648, 1453, 1455
AspS9I GGNCC 8 cut(s) 253, 854, 1087, 1535, 1559, 2225, 2308, 2364
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 5 cut(s) 394, 1150, 1821, 2198, 2235
AvaI CYCGRG 2 cut(s) 230, 2220
AvaII GGWCC 5 cut(s) 253, 1535, 1559, 2225, 2308
BaeGI GKGCMC 1 cut(s) 2104
BamHI GGATCC 1 cut(s) 1009
BanII GRGCYC 4 cut(s) 381, 450, 615, 2116
BbrPI CACGTG 2 cut(s) 1217, 1964
Bbv12I GWGCWC 5 cut(s) 381, 450, 615, 2104, 2116
BbvI GCAGC 7 cut(s) 531, 553, 855, 1017, 1292, 1795, 1945
BccI CCATC 7 cut(s) 227, 407, 673, 908, 968, 2026, 2217
BceAI ACGGC 2 cut(s) 1353, 1562
BcgI CGANNNNNNTGC 4 cut(s) 580, 614, 697, 731
BciT130I CCWGG 5 cut(s) 619, 858, 910, 1888, 2312
BciVI GTATCC 3 cut(s) 1179, 1372, 2406
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 4 cut(s) 623, 1680, 1919, 2367
BfaI CTAG 8 cut(s) 674, 734, 1796, 1938, 2037, 2159, 2291, 2339
BfmI CTRYAG 2 cut(s) 2064, 2273
BfuAI ACCTGC 1 cut(s) 709
BfuI GTATCC 3 cut(s) 1179, 1372, 2406
BglI GCCNNNNNGGC 1 cut(s) 662
BglII AGATCT 3 cut(s) 555, 1336, 2182
BlpI GCTNAGC 1 cut(s) 2049
BmcAI AGTACT 1 cut(s) 2279
Bme1390I CCNGG 6 cut(s) 512, 619, 858, 910, 1888, 2312
Bme18I GGWCC 5 cut(s) 253, 1535, 1559, 2225, 2308
BmeT110I CYCGRG 2 cut(s) 230, 2220
BmgBI CACGTC 1 cut(s) 939
BmgT120I GGNCC 8 cut(s) 253, 854, 1087, 1535, 1559, 2225, 2308, 2364
BmiI GGNNCC 5 cut(s) 184, 1011, 1059, 1537, 2227
BmrFI CCNGG 6 cut(s) 512, 619, 858, 910, 1888, 2312
BmsI GCATC 7 cut(s) 600, 1142, 1438, 1612, 1770, 1795, 1835
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpmI CTGGAG 5 cut(s) 194, 281, 332, 401, 879
Bpu10I CCTNAGC 2 cut(s) 903, 2027
Bpu1102I GCTNAGC 1 cut(s) 2049
BpuEI CTTGAG 2 cut(s) 1565, 2283
BpuMI CCSGG 1 cut(s) 512
Bsa29I ATCGAT 2 cut(s) 522, 594
BsaAI YACGTR 2 cut(s) 1217, 1964
BsaHI GRCGYC 1 cut(s) 881
BsaI GGTCTC 2 cut(s) 623, 1919
BsaWI WCCGGW 1 cut(s) 1869
BsaXI ACNNNNNCTCC 8 cut(s) 13, 43, 263, 293, 302, 332, 425, 455
Bsc4I CCNNNNNNNGG 9 cut(s) 250, 624, 700, 831, 890, 1096, 1371, 1545, 1685
Bse118I RCCGGY 2 cut(s) 587, 632
Bse1I ACTGG 3 cut(s) 349, 1278, 2084
Bse3DI GCAATG 1 cut(s) 547
BseAI TCCGGA 1 cut(s) 1869
BseBI CCWGG 5 cut(s) 619, 858, 910, 1888, 2312
BseCI ATCGAT 2 cut(s) 522, 594
BseGI GGATG 7 cut(s) 219, 684, 919, 1453, 1810, 2037, 2150
BseLI CCNNNNNNNGG 9 cut(s) 250, 624, 700, 831, 890, 1096, 1371, 1545, 1685
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 2 cut(s) 1677, 2040
BseNI ACTGG 3 cut(s) 349, 1278, 2084
BsePI GCGCGC 1 cut(s) 1451
BseSI GKGCMC 1 cut(s) 2104
BseXI GCAGC 7 cut(s) 531, 553, 855, 1017, 1292, 1795, 1945
BseYI CCCAGC 2 cut(s) 237, 282
BsgI GTGCAG 1 cut(s) 1944
Bsh1236I CGCG 5 cut(s) 83, 495, 539, 648, 1453
Bsh1285I CGRYCG 1 cut(s) 711
BshVI ATCGAT 2 cut(s) 522, 594
BsiEI CGRYCG 1 cut(s) 711
BsiHKAI GWGCWC 5 cut(s) 381, 450, 615, 2104, 2116
BsiHKCI CYCGRG 2 cut(s) 230, 2220
BsiSI CCGG 6 cut(s) 180, 512, 588, 633, 1679, 1870
BslFI GGGAC 7 cut(s) 70, 220, 892, 949, 1521, 2054, 2211
BslI CCNNNNNNNGG 9 cut(s) 250, 624, 700, 831, 890, 1096, 1371, 1545, 1685
BsmAI GTCTC 4 cut(s) 623, 1680, 1919, 2367
BsmFI GGGAC 7 cut(s) 70, 220, 892, 949, 1521, 2054, 2211
BsmI GAATGC 2 cut(s) 955, 1857
Bso31I GGTCTC 2 cut(s) 623, 1919
BsoBI CYCGRG 2 cut(s) 230, 2220
Bsp1286I GDGCHC 5 cut(s) 381, 450, 615, 2104, 2116
Bsp13I TCCGGA 1 cut(s) 1869
Bsp1720I GCTNAGC 1 cut(s) 2049
Bsp19I CCATGG 1 cut(s) 1161
BspCNI CTCAG 2 cut(s) 1676, 2041
BspDI ATCGAT 2 cut(s) 522, 594
BspEI TCCGGA 1 cut(s) 1869
BspFNI CGCG 5 cut(s) 83, 495, 539, 648, 1453
BspHI TCATGA 1 cut(s) 1774
BspLI GGNNCC 5 cut(s) 184, 1011, 1059, 1537, 2227
BspMAI CTGCAG 1 cut(s) 2277
BspMI ACCTGC 1 cut(s) 709
BspPI GGATC 6 cut(s) 104, 324, 366, 954, 1004, 1017
BspQI GCTCTTC 1 cut(s) 2121
BspTNI GGTCTC 2 cut(s) 623, 1919
BsrBI CCGCTC 2 cut(s) 246, 396
BsrDI GCAATG 1 cut(s) 547
BsrFI RCCGGY 2 cut(s) 587, 632
BsrI ACTGG 3 cut(s) 349, 1278, 2084
BssAI RCCGGY 2 cut(s) 587, 632
BssHII GCGCGC 1 cut(s) 1451
BssNI GRCGYC 1 cut(s) 881
BssT1I CCWWGG 4 cut(s) 531, 666, 694, 1161
Bst2UI CCWGG 5 cut(s) 619, 858, 910, 1888, 2312
Bst4CI ACNGT 2 cut(s) 325, 1915
Bst6I CTCTTC 3 cut(s) 788, 1467, 2121
BstACI GRCGYC 1 cut(s) 881
BstAPI GCANNNNNTGC 3 cut(s) 1027, 1571, 1688
BstBAI YACGTR 2 cut(s) 1217, 1964
BstC8I GCNNGC 7 cut(s) 216, 303, 589, 615, 750, 1453, 1989
BstDEI CTNAG 5 cut(s) 903, 999, 1663, 2027, 2049
BstDSI CCRYGG 2 cut(s) 1161, 1369
BstENI CCTNNNNNAGG 2 cut(s) 622, 1094
BstF5I GGATG 7 cut(s) 219, 684, 919, 1453, 1810, 2037, 2150
BstFNI CGCG 5 cut(s) 83, 495, 539, 648, 1453
BstHHI GCGC 4 cut(s) 541, 648, 1453, 1455
BstMAI GTCTC 4 cut(s) 623, 1680, 1919, 2367
BstMCI CGRYCG 1 cut(s) 711
BstNI CCWGG 5 cut(s) 619, 858, 910, 1888, 2312
BstNSI RCATGY 2 cut(s) 1025, 2360
BstSCI CCNGG 6 cut(s) 510, 617, 856, 908, 1886, 2310
BstSFI CTRYAG 2 cut(s) 2064, 2273
BstSLI GKGCMC 1 cut(s) 2104
BstUI CGCG 5 cut(s) 83, 495, 539, 648, 1453
BstV1I GCAGC 7 cut(s) 531, 553, 855, 1017, 1292, 1795, 1945
BstX2I RGATCY 4 cut(s) 555, 1009, 1336, 2182
BstXI CCANNNNNNTGG 1 cut(s) 967
BstYI RGATCY 4 cut(s) 555, 1009, 1336, 2182
Bsu15I ATCGAT 2 cut(s) 522, 594
BsuI GTATCC 3 cut(s) 1179, 1372, 2406
BsuTUI ATCGAT 2 cut(s) 522, 594
BtgI CCRYGG 2 cut(s) 1161, 1369
BtrI CACGTC 1 cut(s) 939
BtsCI GGATG 7 cut(s) 219, 684, 919, 1453, 1810, 2037, 2150
BtsI GCAGTG 1 cut(s) 2246
BtsIMutI CAGTG 4 cut(s) 808, 1722, 1920, 2246
BveI ACCTGC 1 cut(s) 709
Cac8I GCNNGC 7 cut(s) 216, 303, 589, 615, 750, 1453, 1989
CciI TCATGA 1 cut(s) 1774
CfoI GCGC 4 cut(s) 541, 648, 1453, 1455
Cfr10I RCCGGY 2 cut(s) 587, 632
Cfr13I GGNCC 8 cut(s) 253, 854, 1087, 1535, 1559, 2225, 2308, 2364
ClaI ATCGAT 2 cut(s) 522, 594
CseI GACGC 2 cut(s) 72, 889
CsiI ACCWGGT 1 cut(s) 2310
Csp6I GTAC 2 cut(s) 577, 2278
CviQI GTAC 2 cut(s) 577, 2278
DdeI CTNAG 5 cut(s) 903, 999, 1663, 2027, 2049
DraIII CACNNNGTG 1 cut(s) 2195
Eam1104I CTCTTC 3 cut(s) 788, 1467, 2121
EarI CTCTTC 3 cut(s) 788, 1467, 2121
EciI GGCGGA 6 cut(s) 67, 154, 212, 350, 464, 912
Ecl136II GAGCTC 4 cut(s) 379, 448, 613, 2114
Eco130I CCWWGG 4 cut(s) 531, 666, 694, 1161
Eco147I AGGCCT 1 cut(s) 665
Eco24I GRGCYC 4 cut(s) 381, 450, 615, 2116
Eco31I GGTCTC 2 cut(s) 623, 1919
Eco32I GATATC 1 cut(s) 1527
Eco47I GGWCC 5 cut(s) 253, 1535, 1559, 2225, 2308
Eco53kI GAGCTC 4 cut(s) 379, 448, 613, 2114
Eco57I CTGAAG 2 cut(s) 764, 1239
Eco72I CACGTG 2 cut(s) 1217, 1964
Eco88I CYCGRG 2 cut(s) 230, 2220
EcoICRI GAGCTC 4 cut(s) 379, 448, 613, 2114
EcoNI CCTNNNNNAGG 2 cut(s) 622, 1094
EcoO109I RGGNCCY 3 cut(s) 253, 1087, 2225
EcoRI GAATTC 1 cut(s) 1517
EcoRII CCWGG 5 cut(s) 617, 856, 908, 1886, 2310
EcoRV GATATC 1 cut(s) 1527
EcoT14I CCWWGG 4 cut(s) 531, 666, 694, 1161
EcoT22I ATGCAT 1 cut(s) 1828
EcoT38I GRGCYC 4 cut(s) 381, 450, 615, 2116
ErhI CCWWGG 4 cut(s) 531, 666, 694, 1161
FalI AAGNNNNNCTT 4 cut(s) 1109, 1141, 1725, 1757
FaqI GGGAC 7 cut(s) 70, 220, 892, 949, 1521, 2054, 2211
FauI CCCGC 3 cut(s) 196, 269, 839
FauNDI CATATG 1 cut(s) 1931
FokI GGATG 7 cut(s) 206, 691, 926, 1460, 1817, 2044, 2137
FriOI GRGCYC 4 cut(s) 381, 450, 615, 2116
FspBI CTAG 8 cut(s) 674, 734, 1796, 1938, 2037, 2159, 2291, 2339
GlaI GCGC 4 cut(s) 540, 647, 1452, 1454
GsaI CCCAGC 2 cut(s) 241, 286
GsuI CTGGAG 5 cut(s) 194, 281, 332, 401, 879
HapII CCGG 6 cut(s) 180, 512, 588, 633, 1679, 1870
HgaI GACGC 2 cut(s) 72, 889
HhaI GCGC 4 cut(s) 541, 648, 1453, 1455
Hin1I GRCGYC 1 cut(s) 881
Hin6I GCGC 4 cut(s) 539, 646, 1451, 1453
HinP1I GCGC 4 cut(s) 539, 646, 1451, 1453
HincII GTYRAC 1 cut(s) 2427
HindII GTYRAC 1 cut(s) 2427
HindIII AAGCTT 1 cut(s) 1175
HpaII CCGG 6 cut(s) 180, 512, 588, 633, 1679, 1870
HphI GGTGA 5 cut(s) 394, 1150, 1821, 2198, 2235
Hpy166II GTNNAC 4 cut(s) 340, 1646, 2102, 2427
Hpy8I GTNNAC 4 cut(s) 340, 1646, 2102, 2427
Hpy99I CGWCG 2 cut(s) 575, 605
HpyCH4III ACNGT 2 cut(s) 325, 1915
HpyCH4IV ACGT 3 cut(s) 938, 1216, 1963
HpyF3I CTNAG 5 cut(s) 903, 999, 1663, 2027, 2049
HpySE526I ACGT 3 cut(s) 938, 1216, 1963
Hsp92I GRCGYC 1 cut(s) 881
HspAI GCGC 4 cut(s) 539, 646, 1451, 1453
Kpn2I TCCGGA 1 cut(s) 1869
KroI GCCGGC 1 cut(s) 587
KroNI GCCGGC 1 cut(s) 589
LguI GCTCTTC 1 cut(s) 2121
Lsp1109I GCAGC 7 cut(s) 531, 553, 855, 1017, 1292, 1795, 1945
LweI GCATC 7 cut(s) 600, 1142, 1438, 1612, 1770, 1795, 1835
MabI ACCWGGT 1 cut(s) 2310
MaeI CTAG 8 cut(s) 674, 734, 1796, 1938, 2037, 2159, 2291, 2339
MaeII ACGT 3 cut(s) 938, 1216, 1963
MaeIII GTNAC 2 cut(s) 1217, 1717
MbiI CCGCTC 2 cut(s) 246, 396
MboII GAAGA 8 cut(s) 529, 805, 1436, 1454, 1484, 1853, 2108, 2168
MflI RGATCY 4 cut(s) 555, 1009, 1336, 2182
MhlI GDGCHC 5 cut(s) 381, 450, 615, 2104, 2116
MluCI AATT 8 cut(s) 1209, 1290, 1517, 1614, 1770, 2057, 2074, 2234
MlyI GAGTC 3 cut(s) 242, 1442, 1453
MmeI TCCRAC 5 cut(s) 61, 294, 408, 450, 1425
Mph1103I ATGCAT 1 cut(s) 1828
MroI TCCGGA 1 cut(s) 1869
MroNI GCCGGC 1 cut(s) 587
MroXI GAANNNNTTC 1 cut(s) 1408
MseI TTAA 3 cut(s) 1047, 1970, 2328
MslI CAYNNNNRTG 2 cut(s) 965, 1226
MspA1I CMGCKG 3 cut(s) 544, 846, 1532
MspI CCGG 6 cut(s) 180, 512, 588, 633, 1679, 1870
MspR9I CCNGG 6 cut(s) 512, 619, 858, 910, 1888, 2312
Mva1269I GAATGC 2 cut(s) 955, 1857
MvaI CCWGG 5 cut(s) 619, 858, 910, 1888, 2312
MvnI CGCG 5 cut(s) 83, 495, 539, 648, 1453
NaeI GCCGGC 1 cut(s) 589
NciI CCSGG 1 cut(s) 512
NcoI CCATGG 1 cut(s) 1161
NdeI CATATG 1 cut(s) 1931
NgoMIV GCCGGC 1 cut(s) 587
NlaIV GGNNCC 5 cut(s) 184, 1011, 1059, 1537, 2227
NmeAIII GCCGAG 2 cut(s) 101, 226
NmuCI GTSAC 2 cut(s) 1217, 1717
NsiI ATGCAT 1 cut(s) 1828
NspI RCATGY 2 cut(s) 1025, 2360
OliI CACNNNNGTG 1 cut(s) 1226
PaeR7I CTCGAG 1 cut(s) 230
PagI TCATGA 1 cut(s) 1774
PaqCI CACCTGC 1 cut(s) 709
PauI GCGCGC 1 cut(s) 1451
PceI AGGCCT 1 cut(s) 665
PciI ACATGT 1 cut(s) 2356
PciSI GCTCTTC 1 cut(s) 2121
PcsI WCGNNNNNNNCGW 4 cut(s) 441, 576, 591, 600
PctI GAATGC 2 cut(s) 955, 1857
PdiI GCCGGC 1 cut(s) 589
PdmI GAANNNNTTC 1 cut(s) 1408
PfeI GAWTC 7 cut(s) 1404, 1417, 1541, 1712, 1754, 2015, 2294
PflMI CCANNNNNTGG 1 cut(s) 890
Ple19I CGATCG 1 cut(s) 711
PleI GAGTC 3 cut(s) 241, 1441, 1453
PmaCI CACGTG 2 cut(s) 1217, 1964
PmlI CACGTG 2 cut(s) 1217, 1964
PpsI GAGTC 3 cut(s) 241, 1441, 1453
Ppu21I YACGTR 2 cut(s) 1217, 1964
PpuMI RGGWCCY 2 cut(s) 253, 2225
PscI ACATGT 1 cut(s) 2356
Psp124BI GAGCTC 4 cut(s) 381, 450, 615, 2116
Psp5II RGGWCCY 2 cut(s) 253, 2225
Psp6I CCWGG 5 cut(s) 617, 856, 908, 1886, 2310
PspCI CACGTG 2 cut(s) 1217, 1964
PspFI CCCAGC 2 cut(s) 237, 282
PspGI CCWGG 5 cut(s) 617, 856, 908, 1886, 2310
PspN4I GGNNCC 5 cut(s) 184, 1011, 1059, 1537, 2227
PspPI GGNCC 8 cut(s) 253, 854, 1087, 1535, 1559, 2225, 2308, 2364
PspPPI RGGWCCY 2 cut(s) 253, 2225
PspXI VCTCGAGB 1 cut(s) 230
PstI CTGCAG 1 cut(s) 2277
PsuI RGATCY 4 cut(s) 555, 1009, 1336, 2182
PteI GCGCGC 1 cut(s) 1451
PvuI CGATCG 1 cut(s) 711
PvuII CAGCTG 2 cut(s) 544, 1532
RsaI GTAC 2 cut(s) 578, 2279
RsaNI GTAC 2 cut(s) 577, 2278
RseI CAYNNNNRTG 2 cut(s) 965, 1226
SacI GAGCTC 4 cut(s) 381, 450, 615, 2116
SapI GCTCTTC 1 cut(s) 2121
SaqAI TTAA 3 cut(s) 1047, 1970, 2328
Sau96I GGNCC 8 cut(s) 253, 854, 1087, 1535, 1559, 2225, 2308, 2364
ScaI AGTACT 1 cut(s) 2279
SchI GAGTC 3 cut(s) 242, 1442, 1453
ScrFI CCNGG 6 cut(s) 512, 619, 858, 910, 1888, 2312
SduI GDGCHC 5 cut(s) 381, 450, 615, 2104, 2116
SexAI ACCWGGT 1 cut(s) 2310
SfaNI GCATC 7 cut(s) 600, 1142, 1438, 1612, 1770, 1795, 1835
SfcI CTRYAG 2 cut(s) 2064, 2273
SfiI GGCCNNNNNGGCC 1 cut(s) 662
Sfr274I CTCGAG 1 cut(s) 230
SinI GGWCC 5 cut(s) 253, 1535, 1559, 2225, 2308
SlaI CTCGAG 1 cut(s) 230
SmiMI CAYNNNNRTG 2 cut(s) 965, 1226
SmlI CTYRAG 3 cut(s) 230, 1580, 2298
SmoI CTYRAG 3 cut(s) 230, 1580, 2298
Sse9I AATT 8 cut(s) 1209, 1290, 1517, 1614, 1770, 2057, 2074, 2234
SseBI AGGCCT 1 cut(s) 665
SspI AATATT 1 cut(s) 1974
SspMI CTAG 8 cut(s) 674, 734, 1796, 1938, 2037, 2159, 2291, 2339
SstI GAGCTC 4 cut(s) 381, 450, 615, 2116
StuI AGGCCT 1 cut(s) 665
StyD4I CCNGG 6 cut(s) 510, 617, 856, 908, 1886, 2310
StyI CCWWGG 4 cut(s) 531, 666, 694, 1161
TaaI ACNGT 2 cut(s) 325, 1915
TaiI ACGT 3 cut(s) 941, 1219, 1966
TaqI TCGA 7 cut(s) 93, 231, 522, 594, 603, 2119, 2410
TasI AATT 8 cut(s) 1209, 1290, 1517, 1614, 1770, 2057, 2074, 2234
TatI WGTACW 1 cut(s) 2277
TauI GCSGC 7 cut(s) 83, 107, 170, 506, 539, 651, 897
TfiI GAWTC 7 cut(s) 1404, 1417, 1541, 1712, 1754, 2015, 2294
Tru1I TTAA 3 cut(s) 1047, 1970, 2328
Tru9I TTAA 3 cut(s) 1047, 1970, 2328
TscAI CASTG 4 cut(s) 808, 1722, 1920, 2253
TseFI GTSAC 2 cut(s) 1217, 1717
TseI GCWGC 7 cut(s) 541, 544, 843, 1030, 1280, 1808, 1958
Tsp45I GTSAC 2 cut(s) 1217, 1717
TspDTI ATGAA 9 cut(s) 674, 833, 1053, 1130, 1293, 1607, 1763, 1791, 2247
TspGWI ACGGA 2 cut(s) 325, 1429
TspRI CASTG 4 cut(s) 808, 1722, 1920, 2253
Van91I CCANNNNNTGG 1 cut(s) 890
VneI GTGCAC 1 cut(s) 2100
VpaK11BI GGWCC 5 cut(s) 253, 1535, 1559, 2225, 2308
XagI CCTNNNNNAGG 2 cut(s) 622, 1094
XapI RAATTY 6 cut(s) 1209, 1290, 1517, 1614, 1770, 2074
XceI RCATGY 2 cut(s) 1025, 2360
XcmI CCANNNNNNNNNTGG 2 cut(s) 664, 1529
XhoI CTCGAG 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 1408
XspI CTAG 8 cut(s) 674, 734, 1796, 1938, 2037, 2159, 2291, 2339
ZrmI AGTACT 1 cut(s) 2279
Zsp2I ATGCAT 1 cut(s) 1828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.