MD09G1149900.v1.1

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0011987
Physical Location & Seq
Reverse (-)
11803977 .. 11807993
4017 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1149900.v1.1.491

Sequence Viewer

Length: 2481 bp
ATGGCTTCTTCTTCATCTCCCGCCTCCTCCTCCGCTTCCCCACTCCAACGCCTCTCCACCTTCAAATCCTCAACCCCCACCTCCGCCATCGCCACCGCATCCCCTTTAGACACATTCGCCTCAGACCCAATCTTCTCTGTCTTCCTCTCCCACTCTTTCTCCTCCACCACCTTCTCCTCCGCCGCCCTCTCCTCCGGCTCCCCCGCCTCTACCGCCGAAAAGCTCCAGCACGCCATCCGCCTCCTCGAGTCTCAGCTCCGCTCCGAGGTCCTCTCCCGCCACTCCGACCTCCTCGCCCAGCTCTCCTCCCTCCACCACGCCGATCACGCCCTTTCCACCGTTCGATCCTCCGTTGCCGCCCTCCAGTCCTCCCTCCGCCACACCCGATCTGAGCTCTCCGACCCCCTCGCCTCCATCCGCACCCTCACCATCCAGCTCCAAAATCTCCACGCCTCCTCCGATCTTCTCCACCACTCCATCAGAGCCCTACGCCTCTCCAGTAAGCTCCGGTCCCTCGCCTCCGATGACCCCGACCGCCTCGATCTTGCCAAGGCTGCTCAGCTCCATTGCGAGATCTTAGCTCTTTACAACGAGTACGACCTCGCCGGCATTGATGTTGTCGATTCCGAGCTCGAGTGGGTCAAGGAGACGGGAGACAAGTTGCGTACGGAGGCGATGAAGGTTTTGGAGAGAGGGATGGAGGGTTTGAACCAGGCCGAGGTTGGGACTGGTCTGCAGGTGTTTTACAATTTGGGAGAGCTGAGACAGGCGATGGATCAGCTGATTAACAAGTATAAGGGAATGGGGATGAAGAGTGTGAGTGCAGCATTGGATATGAAGGCGATTTCTGGGTCGGGAGGAGGTGGGTTTGGGCCGGGTGGAATCAGAGGAGGCGGGGGCACGCCGCAGATTGGCAGTGGTGGGAAGGCGAGGGAGGCGATTTGGCAGAGGATGGGGAGTTGTATGGATCAGCTGCATTCGATAATGGTTGCGGTGTGGCACTTGCAGAGGGTGTTGTCGAAGAAGCGTGACCCATTTACTCATGTATTGCTGCTTGATGAGGTTATTCAGGAAGGTGAGCCTATGATAACAGATAGAGTGTGGGAGGCCCTTGTGAAGGCATTTGCCAATCAAATGAAGTCTGCTTTCACTGCATCAAGTTTTGTTAAAGAGGTTTTCACTATGGGGTATCCGAAGCTTTTCTCTATGATAGATAATCTTCTTGAAAGAATTGCACGCGACACAGATGTCAAAGGGGTTTTACCGGCTATTACGTCAGAGGGAAAGGAACAACTGGTTGCAGCTGTTGAAATATTCCAAAAATCATTTTTGGGACTTTGCTTGGGTCGCTTGTCAGACCTTGTGAATACTGTATTTCCAGTGTCCAGCCGTGGAAGTGTTCCCTCTAAAGAACATATCTCAAGAATTATATCACGGATTCAAGAAGAAATAGAATCTGTTCAGTTGGATGGGCACTTGACTCTTCTTGTATTGCGTGAAATTGGCAAGGTTCTTCTCCTACTTGGTGAACGAGCTGAGTACCAGATATCAACTGGTCCTGAAGCACGTCAAGTCAATGGTCCTGCAACTCCTGCACAGCTCAAGAACTTCATGTTATGTCAGTATCTCCAAGAAATTCATACACACATATCATCTATGGTTACAGGACTGCCCACTATTGCGTTAGATGTGCTGTCTCCCTCGTTAGGTGCAATATACGGGGTTGCTTGTGACTCACTGACGTCCTTGTTCCAAGCTATGCTTGAGCGTCTTGAATCTTGCATCTTGCAAATTCATGAACAGAGATTTGGTGTGCTAGGCATGGATGCCGCTATGGACAACAATGTTTCACCTTACATGGAGGAGTTGCAAAAGTGCATTCTTCACTTCCGTAGTGAGTTCCTGTCTAGGCTTTTGCCTCCAAAATCTGCCACGGTTGGAACAGAGACCATCTGCACTAGGCTTGTTAGGAGCATGGCTGCACGGGTTTTAATATTCTTTATCAGACATGCTTCTCTTATCAGACCCCTTTCAGAATCAGGGAAACTAAGGATGGCCAGGGACATGGCTGAGCTAGAATTAGCAGTAGGCCAAAACTTGTTCCCAGTAGAGCAACTTGGTGCGCCATACAGAGCCCTTCGAGCATTTCGACCTCTTATTTTCTTGGAGACTTCCCAACTCGGAGGTTCTCCTCTTCTTCAAGATCTACCACCAAGCGTCGTACTTCACCATCTTTACTCCCGAGGTCCTGATGAATTGCAATCACCGCTGCAAAGGAACAAACTAACACCTCTGCAATATTCATTGTGGCTAGATTCTCAAGGAGAGGATCAGGTATGGAAGGGTATCAAAGCAACACTAGATGACTATGCCACGCATGTAAGGGCCCGAGGTGACAAAGAGTTCAGCCCTGTCTATCCTCTAATGCTTCGGCTAGGGTCATCTTTGACCGAAAATGCTCGTGCGACCCAAAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COG5

Protein Analysis

827

Amino Acids

90.46

Weight (kDa)

6.68

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG5_N PF10392 47 - 169 5.8e-23 Conserved oligomeric Golgi complex subunit 5, N-terminal
COG5_C PF20649 201 - 407 1e-54 Conserved oligomeric Golgi complex subunit 5, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67930
fragaria_vesca FvH4_6g38530
malus_domestica MD09G1149900.v1.1 MD17G1137000.v1.1
prunus_persica Prupe.3G175300_v2.0.a1 Prupe.3G175300_v2.0.a1
pyrus_communis pycom09g06940 pycom17g13060
rosa_chinensis RchiOBHm_Chr2g0151781
rosa_laevigata RLG00000020581
rosa_multiflora Rmu_co8286875.1_g000001
rosa_roxburghii Rroxscaffold_2G00096160
rosa_rugosa Rorug02G0429000
rosa_samantha Rh2AG489800 Rh2BG502400 Rh2CG476100 Rh2DG513500
rosa_wichuraiana Rw2G040160 Rw2G040270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
AasI GACNNNNNNGTC 2 cut(s) 1247, 2473
AatII GACGTC 1 cut(s) 1745
Acc36I ACCTGC 1 cut(s) 727
AccBSI CCGCTC 1 cut(s) 261
AccII CGCG 1 cut(s) 1239
AclWI GGATC 4 cut(s) 339, 783, 975, 2337
AcoI YGGCCR 1 cut(s) 2055
AcsI RAATTY 2 cut(s) 1635, 1791
AcuI CTGAAG 1 cut(s) 1581
AcyI GRCGYC 1 cut(s) 1742
AfaI GTAC 4 cut(s) 596, 667, 1541, 2223
AfiI CCNNNNNNNGG 6 cut(s) 265, 718, 723, 911, 1117, 1706
AgsI TTSAA 7 cut(s) 64, 709, 1226, 1310, 1442, 1775, 2201
AjiI CACGTC 1 cut(s) 1568
AjnI CCWGG 2 cut(s) 711, 2057
AjuI GAANNNNNNNTTGG 2 cut(s) 1791, 1823
Alw21I GWGCWC 2 cut(s) 396, 633
Alw26I GTCTC 7 cut(s) 255, 641, 648, 757, 1701, 1940, 2162
AlwI GGATC 4 cut(s) 339, 783, 975, 2337
Ama87I CYCGRG 4 cut(s) 245, 632, 2241, 2388
AoxI GGCC 6 cut(s) 714, 872, 1107, 2055, 2089, 2385
ApaI GGGCCC 1 cut(s) 2389
ApeKI GCWGC 7 cut(s) 554, 824, 973, 1051, 1301, 1979, 2269
ApoI RAATTY 2 cut(s) 1635, 1791
Asp700I GAANNNNTTC 2 cut(s) 1199, 1458
AspLEI GCGC 1 cut(s) 2125
AspS9I GGNCC 9 cut(s) 268, 510, 872, 1108, 1556, 1580, 2246, 2385, 2386
AsuC2I CCSGG 1 cut(s) 876
AsuHPI GGTGA 7 cut(s) 418, 1088, 1538, 1842, 2219, 2256, 2405
AvaI CYCGRG 4 cut(s) 245, 632, 2241, 2388
AvaII GGWCC 5 cut(s) 268, 510, 1556, 1580, 2246
BaeGI GKGCMC 3 cut(s) 902, 1476, 2389
BalI TGGCCA 1 cut(s) 2057
BanII GRGCYC 5 cut(s) 396, 487, 633, 2137, 2389
BauI CACGAG 1 cut(s) 2460
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 2 cut(s) 396, 633
BbvI GCAGC 7 cut(s) 541, 836, 960, 1038, 1313, 1966, 2256
BceAI ACGGC 1 cut(s) 1374
BciT130I CCWGG 2 cut(s) 713, 2059
BciVI GTATCC 1 cut(s) 1200
BcnI CCSGG 1 cut(s) 876
BcoDI GTCTC 7 cut(s) 255, 641, 648, 757, 1701, 1940, 2162
BfaI CTAG 7 cut(s) 1817, 1908, 1959, 2075, 2312, 2360, 2435
BfmI CTRYAG 1 cut(s) 734
BfuAI ACCTGC 1 cut(s) 727
BfuI GTATCC 1 cut(s) 1200
BglII AGATCT 2 cut(s) 573, 2203
BlpI GCTNAGC 2 cut(s) 558, 2070
Bme1390I CCNGG 3 cut(s) 713, 876, 2059
Bme18I GGWCC 5 cut(s) 268, 510, 1556, 1580, 2246
BmeT110I CYCGRG 4 cut(s) 245, 632, 2241, 2388
BmgBI CACGTC 1 cut(s) 1568
BmgT120I GGNCC 9 cut(s) 268, 510, 872, 1108, 1556, 1580, 2246, 2385, 2386
BmiI GGNNCC 3 cut(s) 199, 512, 2387
BmrFI CCNGG 3 cut(s) 713, 876, 2059
BmrI ACTGGG 1 cut(s) 2099
BmsI GCATC 4 cut(s) 107, 1163, 1791, 1816
BmuI ACTGGG 1 cut(s) 2099
BpiI GAAGAC 1 cut(s) 133
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BpmI CTGGAG 3 cut(s) 209, 347, 481
Bpu1102I GCTNAGC 2 cut(s) 558, 2070
BpuEI CTTGAG 4 cut(s) 1405, 1586, 1784, 2304
BpuMI CCSGG 1 cut(s) 876
BsaHI GRCGYC 1 cut(s) 1742
BsaI GGTCTC 1 cut(s) 1940
BsaJI CCNNGG 8 cut(s) 264, 549, 717, 1390, 1932, 2058, 2242, 2389
BsaWI WCCGGW 1 cut(s) 507
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 440, 470
Bsc4I CCNNNNNNNGG 6 cut(s) 265, 718, 723, 911, 1117, 1706
Bse118I RCCGGY 2 cut(s) 605, 1264
Bse1I ACTGG 7 cut(s) 364, 498, 733, 1299, 1379, 1558, 2105
Bse3DI GCAATG 1 cut(s) 565
BseBI CCWGG 2 cut(s) 713, 2059
BseDI CCNNGG 8 cut(s) 264, 549, 717, 1390, 1932, 2058, 2242, 2389
BseLI CCNNNNNNNGG 6 cut(s) 265, 718, 723, 911, 1117, 1706
BseMI GCAATG 1 cut(s) 565
BseMII CTCAG 7 cut(s) 135, 266, 381, 572, 752, 1527, 2061
BseNI ACTGG 7 cut(s) 364, 498, 733, 1299, 1379, 1558, 2105
BseSI GKGCMC 3 cut(s) 902, 1476, 2389
BseXI GCAGC 7 cut(s) 541, 836, 960, 1038, 1313, 1966, 2256
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 4 cut(s) 843, 1578, 1939, 1965
Bsh1236I CGCG 1 cut(s) 1239
Bsh1285I CGRYCG 1 cut(s) 535
BshFI GGCC 6 cut(s) 716, 874, 1109, 2057, 2091, 2387
BsiEI CGRYCG 1 cut(s) 535
BsiHKAI GWGCWC 2 cut(s) 396, 633
BsiHKCI CYCGRG 4 cut(s) 245, 632, 2241, 2388
BsiSI CCGG 5 cut(s) 195, 508, 606, 875, 1265
BsiWI CGTACG 1 cut(s) 665
BslFI GGGAC 4 cut(s) 496, 739, 1347, 2075
BslI CCNNNNNNNGG 6 cut(s) 265, 718, 723, 911, 1117, 1706
BsmAI GTCTC 7 cut(s) 255, 641, 648, 757, 1701, 1940, 2162
BsmBI CGTCTC 1 cut(s) 641
BsmFI GGGAC 4 cut(s) 496, 739, 1347, 2075
BsmI GAATGC 2 cut(s) 976, 1878
BsnI GGCC 6 cut(s) 716, 874, 1109, 2057, 2091, 2387
Bso31I GGTCTC 1 cut(s) 1940
BsoBI CYCGRG 4 cut(s) 245, 632, 2241, 2388
Bsp120I GGGCCC 1 cut(s) 2385
Bsp1286I GDGCHC 7 cut(s) 396, 487, 633, 902, 1476, 2137, 2389
Bsp1720I GCTNAGC 2 cut(s) 558, 2070
BspANI GGCC 6 cut(s) 716, 874, 1109, 2057, 2091, 2387
BspCNI CTCAG 7 cut(s) 134, 265, 382, 571, 753, 1528, 2062
BspFNI CGCG 1 cut(s) 1239
BspHI TCATGA 1 cut(s) 1795
BspLI GGNNCC 3 cut(s) 199, 512, 2387
BspMAI CTGCAG 1 cut(s) 738
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 4 cut(s) 339, 783, 975, 2337
BspTNI GGTCTC 1 cut(s) 1940
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 565
BsrFI RCCGGY 2 cut(s) 605, 1264
BsrI ACTGG 7 cut(s) 364, 498, 733, 1299, 1379, 1558, 2105
BssAI RCCGGY 2 cut(s) 605, 1264
BssECI CCNNGG 8 cut(s) 264, 549, 717, 1390, 1932, 2058, 2242, 2389
BssNI GRCGYC 1 cut(s) 1742
BssSI CACGAG 1 cut(s) 2460
BssT1I CCWWGG 1 cut(s) 549
Bst2BI CACGAG 1 cut(s) 2460
Bst2UI CCWGG 2 cut(s) 713, 2059
Bst4CI ACNGT 3 cut(s) 340, 1372, 1936
Bst6I CTCTTC 3 cut(s) 806, 1488, 2199
BstACI GRCGYC 1 cut(s) 1742
BstAPI GCANNNNNTGC 1 cut(s) 1592
BstC8I GCNNGC 4 cut(s) 231, 607, 902, 1237
BstDEI CTNAG 9 cut(s) 121, 252, 390, 558, 577, 761, 1536, 2048, 2070
BstDSI CCRYGG 2 cut(s) 1390, 1932
BstENI CCTNNNNNAGG 1 cut(s) 1115
BstFNI CGCG 1 cut(s) 1239
BstHHI GCGC 1 cut(s) 2125
BstMAI GTCTC 7 cut(s) 255, 641, 648, 757, 1701, 1940, 2162
BstMCI CGRYCG 1 cut(s) 535
BstMWI GCNNNNNNNGC 9 cut(s) 212, 326, 554, 935, 1151, 1347, 1592, 2141, 2266
BstNI CCWGG 2 cut(s) 713, 2059
BstNSI RCATGY 2 cut(s) 2012, 2381
BstSCI CCNGG 3 cut(s) 711, 874, 2057
BstSFI CTRYAG 1 cut(s) 734
BstSLI GKGCMC 3 cut(s) 902, 1476, 2389
BstUI CGCG 1 cut(s) 1239
BstV1I GCAGC 7 cut(s) 541, 836, 960, 1038, 1313, 1966, 2256
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 2 cut(s) 573, 2203
BstXI CCANNNNNNTGG 1 cut(s) 2065
BstYI RGATCY 2 cut(s) 573, 2203
BsuI GTATCC 1 cut(s) 1200
BsuRI GGCC 6 cut(s) 716, 874, 1109, 2057, 2091, 2387
BtgI CCRYGG 2 cut(s) 1390, 1932
BtgZI GCGATG 3 cut(s) 73, 689, 785
BtrI CACGTC 1 cut(s) 1568
BtsI GCAGTG 2 cut(s) 922, 1149
BtsIMutI CAGTG 4 cut(s) 922, 1149, 1386, 1736
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 4 cut(s) 231, 607, 902, 1237
CciI TCATGA 1 cut(s) 1795
CfoI GCGC 1 cut(s) 2125
Cfr10I RCCGGY 2 cut(s) 605, 1264
Cfr13I GGNCC 9 cut(s) 268, 510, 872, 1108, 1556, 1580, 2246, 2385, 2386
CseI GACGC 2 cut(s) 1757, 2206
Csp6I GTAC 4 cut(s) 595, 666, 1540, 2222
CviAII CATG 9 cut(s) 1043, 1612, 1796, 1822, 1858, 1975, 2009, 2065, 2378
CviQI GTAC 4 cut(s) 595, 666, 1540, 2222
DdeI CTNAG 9 cut(s) 121, 252, 390, 558, 577, 761, 1536, 2048, 2070
DrdI GACNNNNNNGTC 2 cut(s) 1247, 2473
DseDI GACNNNNNNGTC 2 cut(s) 1247, 2473
EaeI YGGCCR 1 cut(s) 2055
Eam1104I CTCTTC 3 cut(s) 806, 1488, 2199
EarI CTCTTC 3 cut(s) 806, 1488, 2199
EciI GGCGGA 4 cut(s) 73, 169, 227, 365
Ecl136II GAGCTC 2 cut(s) 394, 631
Eco130I CCWWGG 1 cut(s) 549
Eco24I GRGCYC 5 cut(s) 396, 487, 633, 2137, 2389
Eco31I GGTCTC 1 cut(s) 1940
Eco32I GATATC 1 cut(s) 1548
Eco47I GGWCC 5 cut(s) 268, 510, 1556, 1580, 2246
Eco53kI GAGCTC 2 cut(s) 394, 631
Eco57I CTGAAG 1 cut(s) 1581
Eco88I CYCGRG 4 cut(s) 245, 632, 2241, 2388
EcoICRI GAGCTC 2 cut(s) 394, 631
EcoNI CCTNNNNNAGG 1 cut(s) 1115
EcoO109I RGGNCCY 4 cut(s) 268, 1108, 2246, 2385
EcoRII CCWGG 2 cut(s) 711, 2057
EcoRV GATATC 1 cut(s) 1548
EcoT14I CCWWGG 1 cut(s) 549
EcoT38I GRGCYC 5 cut(s) 396, 487, 633, 2137, 2389
ErhI CCWWGG 1 cut(s) 549
Esp3I CGTCTC 1 cut(s) 641
FaeI CATG 9 cut(s) 1046, 1615, 1799, 1825, 1861, 1978, 2012, 2068, 2381
FalI AAGNNNNNCTT 2 cut(s) 1746, 1778
FaqI GGGAC 4 cut(s) 496, 739, 1347, 2075
FatI CATG 9 cut(s) 1042, 1611, 1795, 1821, 1857, 1974, 2008, 2064, 2377
FauI CCCGC 4 cut(s) 28, 211, 284, 887
FriOI GRGCYC 5 cut(s) 396, 487, 633, 2137, 2389
FspBI CTAG 7 cut(s) 1817, 1908, 1959, 2075, 2312, 2360, 2435
GlaI GCGC 1 cut(s) 2124
GsaI CCCAGC 1 cut(s) 301
GsuI CTGGAG 3 cut(s) 209, 347, 481
HaeIII GGCC 6 cut(s) 716, 874, 1109, 2057, 2091, 2387
HapII CCGG 5 cut(s) 195, 508, 606, 875, 1265
HgaI GACGC 2 cut(s) 1757, 2206
HhaI GCGC 1 cut(s) 2125
Hin1I GRCGYC 1 cut(s) 1742
Hin1II CATG 9 cut(s) 1046, 1615, 1799, 1825, 1861, 1978, 2012, 2068, 2381
Hin6I GCGC 1 cut(s) 2123
HinP1I GCGC 1 cut(s) 2123
HindIII AAGCTT 1 cut(s) 1196
HpaII CCGG 5 cut(s) 195, 508, 606, 875, 1265
HphI GGTGA 7 cut(s) 418, 1088, 1538, 1842, 2219, 2256, 2405
Hpy166II GTNNAC 1 cut(s) 1529
Hpy8I GTNNAC 1 cut(s) 1529
Hpy99I CGWCG 1 cut(s) 2222
HpyAV CCTTC 9 cut(s) 70, 181, 673, 832, 919, 1067, 1111, 2147, 2335
HpyCH4III ACNGT 3 cut(s) 340, 1372, 1936
HpyCH4IV ACGT 3 cut(s) 1274, 1567, 1742
HpyF10VI GCNNNNNNNGC 9 cut(s) 212, 326, 554, 935, 1151, 1347, 1592, 2141, 2266
HpyF3I CTNAG 9 cut(s) 121, 252, 390, 558, 577, 761, 1536, 2048, 2070
HpySE526I ACGT 3 cut(s) 1274, 1567, 1742
Hsp92I GRCGYC 1 cut(s) 1742
Hsp92II CATG 9 cut(s) 1046, 1615, 1799, 1825, 1861, 1978, 2012, 2068, 2381
HspAI GCGC 1 cut(s) 2123
KroI GCCGGC 1 cut(s) 605
KroNI GCCGGC 1 cut(s) 607
LmnI GCTCC 8 cut(s) 203, 228, 261, 266, 441, 510, 567, 1971
Lsp1109I GCAGC 7 cut(s) 541, 836, 960, 1038, 1313, 1966, 2256
LweI GCATC 4 cut(s) 107, 1163, 1791, 1816
MaeI CTAG 7 cut(s) 1817, 1908, 1959, 2075, 2312, 2360, 2435
MaeII ACGT 3 cut(s) 1274, 1567, 1742
MaeIII GTNAC 4 cut(s) 1028, 1660, 1730, 2393
MbiI CCGCTC 1 cut(s) 261
MflI RGATCY 2 cut(s) 573, 2203
MhlI GDGCHC 7 cut(s) 396, 487, 633, 902, 1476, 2137, 2389
MlsI TGGCCA 1 cut(s) 2057
MluCI AATT 8 cut(s) 748, 1230, 1425, 1500, 1635, 1791, 2078, 2255
MluNI TGGCCA 1 cut(s) 2057
MlyI GAGTC 3 cut(s) 257, 1474, 1727
MmeI TCCRAC 5 cut(s) 70, 309, 423, 1446, 1918
Mox20I TGGCCA 1 cut(s) 2057
MroNI GCCGGC 1 cut(s) 605
MroXI GAANNNNTTC 2 cut(s) 1199, 1458
MscI TGGCCA 1 cut(s) 2057
MseI TTAA 3 cut(s) 786, 1167, 1991
Msp20I TGGCCA 1 cut(s) 2057
MspA1I CMGCKG 4 cut(s) 781, 973, 1304, 2269
MspI CCGG 5 cut(s) 195, 508, 606, 875, 1265
MspR9I CCNGG 3 cut(s) 713, 876, 2059
Mva1269I GAATGC 2 cut(s) 976, 1878
MvaI CCWGG 2 cut(s) 713, 2059
MvnI CGCG 1 cut(s) 1239
MwoI GCNNNNNNNGC 9 cut(s) 212, 326, 554, 935, 1151, 1347, 1592, 2141, 2266
NaeI GCCGGC 1 cut(s) 607
NciI CCSGG 1 cut(s) 876
NgoMIV GCCGGC 1 cut(s) 605
NlaIII CATG 9 cut(s) 1046, 1615, 1799, 1825, 1861, 1978, 2012, 2068, 2381
NlaIV GGNNCC 3 cut(s) 199, 512, 2387
NmeAIII GCCGAG 1 cut(s) 742
NmuCI GTSAC 3 cut(s) 1028, 1730, 2393
NspI RCATGY 2 cut(s) 2012, 2381
PaeR7I CTCGAG 2 cut(s) 245, 632
PagI TCATGA 1 cut(s) 1795
PaqCI CACCTGC 1 cut(s) 727
PcsI WCGNNNNNNNCGW 2 cut(s) 456, 2146
PctI GAATGC 2 cut(s) 976, 1878
PdiI GCCGGC 1 cut(s) 607
PdmI GAANNNNTTC 2 cut(s) 1199, 1458
PfeI GAWTC 7 cut(s) 623, 882, 1438, 1454, 1775, 2036, 2315
Pfl23II CGTACG 1 cut(s) 665
PleI GAGTC 3 cut(s) 256, 1474, 1727
PpsI GAGTC 3 cut(s) 256, 1474, 1727
PpuMI RGGWCCY 2 cut(s) 268, 2246
Psp124BI GAGCTC 2 cut(s) 396, 633
Psp5II RGGWCCY 2 cut(s) 268, 2246
Psp6I CCWGG 2 cut(s) 711, 2057
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 2 cut(s) 711, 2057
PspLI CGTACG 1 cut(s) 665
PspN4I GGNNCC 3 cut(s) 199, 512, 2387
PspOMI GGGCCC 1 cut(s) 2385
PspPI GGNCC 9 cut(s) 268, 510, 872, 1108, 1556, 1580, 2246, 2385, 2386
PspPPI RGGWCCY 2 cut(s) 268, 2246
PspXI VCTCGAGB 2 cut(s) 245, 632
PstI CTGCAG 1 cut(s) 738
PsuI RGATCY 2 cut(s) 573, 2203
PvuII CAGCTG 3 cut(s) 781, 973, 1304
RsaI GTAC 4 cut(s) 596, 667, 1541, 2223
RsaNI GTAC 4 cut(s) 595, 666, 1540, 2222
SacI GAGCTC 2 cut(s) 396, 633
SaqAI TTAA 3 cut(s) 786, 1167, 1991
Sau96I GGNCC 9 cut(s) 268, 510, 872, 1108, 1556, 1580, 2246, 2385, 2386
SchI GAGTC 3 cut(s) 257, 1474, 1727
ScrFI CCNGG 3 cut(s) 713, 876, 2059
SduI GDGCHC 7 cut(s) 396, 487, 633, 902, 1476, 2137, 2389
SfaNI GCATC 4 cut(s) 107, 1163, 1791, 1816
SfcI CTRYAG 1 cut(s) 734
Sfr274I CTCGAG 2 cut(s) 245, 632
SinI GGWCC 5 cut(s) 268, 510, 1556, 1580, 2246
SlaI CTCGAG 2 cut(s) 245, 632
SmlI CTYRAG 6 cut(s) 245, 632, 1420, 1601, 1763, 2319
SmoI CTYRAG 6 cut(s) 245, 632, 1420, 1601, 1763, 2319
Sse9I AATT 8 cut(s) 748, 1230, 1425, 1500, 1635, 1791, 2078, 2255
SspI AATATT 3 cut(s) 1314, 1995, 2300
SspMI CTAG 7 cut(s) 1817, 1908, 1959, 2075, 2312, 2360, 2435
SstI GAGCTC 2 cut(s) 396, 633
StyD4I CCNGG 3 cut(s) 711, 874, 2057
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 3 cut(s) 340, 1372, 1936
TaiI ACGT 3 cut(s) 1277, 1570, 1745
TaqI TCGA 9 cut(s) 246, 343, 540, 621, 633, 980, 1019, 2140, 2149
TaqII GACCGA 1 cut(s) 2465
TasI AATT 8 cut(s) 748, 1230, 1425, 1500, 1635, 1791, 2078, 2255
TauI GCSGC 4 cut(s) 185, 359, 907, 1832
TfiI GAWTC 7 cut(s) 623, 882, 1438, 1454, 1775, 2036, 2315
Tru1I TTAA 3 cut(s) 786, 1167, 1991
Tru9I TTAA 3 cut(s) 786, 1167, 1991
TscAI CASTG 4 cut(s) 922, 1156, 1386, 1743
TseFI GTSAC 3 cut(s) 1028, 1730, 2393
TseI GCWGC 7 cut(s) 554, 824, 973, 1051, 1301, 1979, 2269
Tsp45I GTSAC 3 cut(s) 1028, 1730, 2393
TspGWI ACGGA 4 cut(s) 340, 683, 1450, 1880
TspRI CASTG 4 cut(s) 922, 1156, 1386, 1743
VpaK11BI GGWCC 5 cut(s) 268, 510, 1556, 1580, 2246
XagI CCTNNNNNAGG 1 cut(s) 1115
XapI RAATTY 2 cut(s) 1635, 1791
XceI RCATGY 2 cut(s) 2012, 2381
XcmI CCANNNNNNNNNTGG 2 cut(s) 719, 1550
XhoI CTCGAG 2 cut(s) 245, 632
XmnI GAANNNNTTC 2 cut(s) 1199, 1458
XspI CTAG 7 cut(s) 1817, 1908, 1959, 2075, 2312, 2360, 2435
ZraI GACGTC 1 cut(s) 1743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.