Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011987

Physical Location & Seq

Genomic Coordinates Reverse (-)

54937210 .. 54937581

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0429000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCAAAGAAAGAGAGGACCTTTTTCTGCTTGTGCTTCTGGGCATGATGATGTTGGTGCGTACGGGATTCAGAGCAGCTTTGGTGGCAGAGATGGTGTCATTTTGGATTTGCATAAGCGACTTGGGTTGAGACTTGGGTCCGGCGGCGGTGATGGGTTGCTTTGGCATACTGACTTGAAGCCTCACGCCTCCGGTGACTACTCGATCGCTGTGGTTCAGGCCAATTCGAGCCTTGAGGATCAGGGACAGGTGTTTACCTCTCCCTCTGCCACGTACGTCGGCGTGTATGACGGTCACGGCGGACCGGAAGCTTCTAGATTCGTCAACAAGGTGGGTTTTGTTTTGATTGATTTTATAGTTAAAAATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG5

Protein Analysis

123

Amino Acids

12.95

Weight (kDa)

6.49

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67930
fragaria_vesca	FvH4_6g38530
malus_domestica	MD09G1149900.v1.1 MD17G1137000.v1.1
prunus_persica	Prupe.3G175300_v2.0.a1 Prupe.3G175300_v2.0.a1
pyrus_communis	pycom09g06940 pycom17g13060
rosa_chinensis	RchiOBHm_Chr2g0151781
rosa_laevigata	RLG00000020581
rosa_multiflora	Rmu_co8286875.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096160
rosa_rugosa	Rorug02G0429000
rosa_samantha	Rh2AG489800 Rh2BG502400 Rh2CG476100 Rh2DG513500
rosa_wichuraiana	Rw2G040160 Rw2G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	144, 147, 300
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	364
AfaI	GTAC	2 cut(s)	62, 275
AgsI	TTSAA	1 cut(s)	178
AluBI	AGCT	2 cut(s)	78, 311
AluI	AGCT	2 cut(s)	78, 311
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	246
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	364
AspS9I	GGNCC	3 cut(s)	17, 138, 302
AsuHPI	GGTGA	2 cut(s)	161, 206
AvaII	GGWCC	3 cut(s)	17, 138, 302
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	86, 146
BceAI	ACGGC	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	315
BisI	GCNGC	2 cut(s)	76, 145
BlsI	GCNGC	2 cut(s)	77, 146
Bme18I	GGWCC	3 cut(s)	17, 138, 302
BmgT120I	GGNCC	3 cut(s)	17, 138, 302
BmiI	GGNNCC	1 cut(s)	139
BoxI	GACNNNNGTC	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	254
BsaAI	YACGTR	1 cut(s)	273
BsaWI	WCCGGW	2 cut(s)	191, 304
BseXI	GCAGC	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	207
BsiSI	CCGG	3 cut(s)	141, 192, 305
BsiWI	CGTACG	2 cut(s)	60, 273
BslFI	GGGAC	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	204, 238
BspACI	CCGC	3 cut(s)	144, 147, 300
BspANI	GGCC	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	246
BssMI	GATC	2 cut(s)	204, 238
Bst4CI	ACNGT	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	273
BstKTI	GATC	2 cut(s)	207, 241
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	2 cut(s)	204, 238
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstPAI	GACNNNNGTC	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	221
Cfr13I	GGNCC	3 cut(s)	17, 138, 302
CpoI	CGGWCCG	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	61, 274
CspI	CGGWCCG	1 cut(s)	302
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	5 cut(s)	78, 181, 221, 231, 311
CviKI_1	RGCY	5 cut(s)	78, 181, 221, 231, 311
CviQI	GTAC	2 cut(s)	61, 274
DpnI	GATC	2 cut(s)	206, 240
DpnII	GATC	2 cut(s)	204, 238
EciI	GGCGGA	1 cut(s)	315
Eco47I	GGWCC	3 cut(s)	17, 138, 302
EcoO109I	RGGNCCY	1 cut(s)	17
FaeI	CATG	1 cut(s)	47
FaiI	YATR	5 cut(s)	45, 114, 168, 288, 356
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	76, 145
Fsp4HI	GCNGC	2 cut(s)	76, 145
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	2 cut(s)	76, 145
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	3 cut(s)	141, 192, 305
Hin1II	CATG	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	2 cut(s)	67, 318
HpaII	CCGG	3 cut(s)	141, 192, 305
HphI	GGTGA	2 cut(s)	161, 206
Hpy166II	GTNNAC	2 cut(s)	255, 325
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	2 cut(s)	315, 369
Hpy8I	GTNNAC	2 cut(s)	255, 325
Hpy99I	CGWCG	1 cut(s)	281
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	2 cut(s)	272, 276
HpyCH4V	TGCA	2 cut(s)	4, 112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpySE526I	ACGT	2 cut(s)	272, 276
Hsp92II	CATG	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	204, 238
LpnPI	CCDG	7 cut(s)	24, 154, 203, 205, 227, 233, 318
Lsp1109I	GCAGC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	2 cut(s)	272, 276
MaeIII	GTNAC	2 cut(s)	194, 293
MalI	GATC	2 cut(s)	206, 240
MboI	GATC	2 cut(s)	204, 238
MluCI	AATT	2 cut(s)	223, 364
MnlI	CCTC	6 cut(s)	8, 192, 199, 229, 268, 274
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	48
MspI	CCGG	3 cut(s)	141, 192, 305
MwoI	GCNNNNNNNGC	1 cut(s)	84
NdeII	GATC	2 cut(s)	204, 238
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	2 cut(s)	194, 293
PfeI	GAWTC	2 cut(s)	67, 318
Pfl23II	CGTACG	2 cut(s)	60, 273
PkrI	GCNGC	2 cut(s)	77, 146
Ple19I	CGATCG	1 cut(s)	207
Ppu21I	YACGTR	1 cut(s)	273
PpuMI	RGGWCCY	1 cut(s)	17
PshAI	GACNNNNGTC	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	17
PspLI	CGTACG	2 cut(s)	60, 273
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	3 cut(s)	17, 138, 302
PspPPI	RGGWCCY	1 cut(s)	17
PvuI	CGATCG	1 cut(s)	207
RsaI	GTAC	2 cut(s)	62, 275
RsaNI	GTAC	2 cut(s)	61, 274
RseI	CAYNNNNRTG	1 cut(s)	48
Rsr2I	CGGWCCG	1 cut(s)	302
RsrII	CGGWCCG	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	2 cut(s)	76, 145
Sau3AI	GATC	2 cut(s)	204, 238
Sau96I	GGNCC	3 cut(s)	17, 138, 302
SetI	ASST	8 cut(s)	22, 80, 252, 260, 275, 279, 313, 333
SinI	GGWCC	3 cut(s)	17, 138, 302
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	223, 364
SsiI	CCGC	3 cut(s)	144, 147, 300
SspMI	CTAG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	2 cut(s)	275, 279
TaqI	TCGA	2 cut(s)	203, 227
TasI	AATT	2 cut(s)	223, 364
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	67, 318
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseFI	GTSAC	2 cut(s)	194, 293
TseI	GCWGC	1 cut(s)	75
Tsp45I	GTSAC	2 cut(s)	194, 293
VpaK11BI	GGWCC	3 cut(s)	17, 138, 302
XapI	RAATTY	1 cut(s)	364
XbaI	TCTAGA	1 cut(s)	314
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.