Rmu_co8286875.1_g000001

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8286875.1
OG0011987
Physical Location & Seq
Forward (+)
125 .. 861
737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8286875.1_g000001.1.cds

Sequence Viewer

Length: 737 bp
atgattagtggactgcccactattgcctcagatgtgctgtccccggccttaggtgcaatatatggggttgcttgtgactcagtgacaaccttgttccaagcaatgcttgatcgtcttgaatcttgcatcttgcaaattcatgaacagaagtttggtgtgctaggcatggatgctgctatggataacaatgcatcaccttacatggaggagttgcagaagtgcattcttcacttccggagtgagttcctatctaggctgttgccttcaaaaactgccgctgtgggagtagagaccatatgcaccagacttgttagaagcatggctgcacgggttttaatattttttatcaggcacgcttctcttgtcagacccctttcagaatcagggaagctaaggatggctagggacatggctgagctggaattagctgttggccaaaatttgttcccagtagagcaacttggtgcaccatatagagctcttcgagcatttcggcctctcattttcttggacacatcccaacttggagcatctcctcttcttcaagatctaccaccaagtgtcatacttcaccatctatactcccgaggtcccgatgaattgcaatcgcctctacaaaggaacaaactaacacctctgcaatactccttgtggctagattctcaaggagaggaccaggtttggaagggtattaaggcaacactagatgactatgctacacatgtaagggccagagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COG5

Protein Analysis

246

Amino Acids

27.29

Weight (kDa)

6.59

Isoelectric Point (pI)

61.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67930
fragaria_vesca FvH4_6g38530
malus_domestica MD09G1149900.v1.1 MD17G1137000.v1.1
prunus_persica Prupe.3G175300_v2.0.a1 Prupe.3G175300_v2.0.a1
pyrus_communis pycom09g06940 pycom17g13060
rosa_chinensis RchiOBHm_Chr2g0151781
rosa_laevigata RLG00000020581
rosa_multiflora Rmu_co8286875.1_g000001
rosa_roxburghii Rroxscaffold_2G00096160
rosa_rugosa Rorug02G0429000
rosa_samantha Rh2AG489800 Rh2BG502400 Rh2CG476100 Rh2DG513500
rosa_wichuraiana Rw2G040160 Rw2G040270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 234
AciI CCGC 1 cut(s) 276
AcoI YGGCCR 1 cut(s) 433
AcsI RAATTY 2 cut(s) 135, 439
AdeI CACNNNGTG 1 cut(s) 560
AfiI CCNNNNNNNGG 1 cut(s) 50
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 3 cut(s) 119, 267, 545
AjnI CCWGG 1 cut(s) 675
AjuI GAANNNNNNNTTGG 4 cut(s) 135, 167, 414, 446
AluBI AGCT 4 cut(s) 391, 418, 428, 479
AluI AGCT 4 cut(s) 391, 418, 428, 479
Alw21I GWGCWC 2 cut(s) 469, 481
Alw26I GTCTC 1 cut(s) 284
Alw44I GTGCAC 1 cut(s) 465
Ama87I CYCGRG 1 cut(s) 585
Aor13HI TCCGGA 1 cut(s) 234
AoxI GGCC 4 cut(s) 45, 433, 494, 729
ApaLI GTGCAC 1 cut(s) 465
ApeKI GCWGC 2 cut(s) 173, 323
ApoI RAATTY 2 cut(s) 135, 439
AspS9I GGNCC 3 cut(s) 590, 673, 729
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 186, 563
AvaI CYCGRG 1 cut(s) 585
AvaII GGWCC 2 cut(s) 590, 673
AxyI CCTNAGG 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 469
BalI TGGCCA 1 cut(s) 435
BanII GRGCYC 1 cut(s) 481
Bbv12I GWGCWC 2 cut(s) 469, 481
BbvI GCAGC 2 cut(s) 160, 310
BccI CCATC 2 cut(s) 391, 582
BciT130I CCWGG 1 cut(s) 677
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 5 cut(s) 161, 252, 402, 656, 704
BglII AGATCT 1 cut(s) 547
BisI GCNGC 3 cut(s) 174, 276, 324
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 3 cut(s) 175, 277, 325
Bme1390I CCNGG 2 cut(s) 44, 677
Bme18I GGWCC 2 cut(s) 590, 673
BmeT110I CYCGRG 1 cut(s) 585
BmgT120I GGNCC 3 cut(s) 590, 673, 729
BmiI GGNNCC 1 cut(s) 592
BmrFI CCNGG 2 cut(s) 44, 677
BmrI ACTGGG 1 cut(s) 443
BmsI GCATC 4 cut(s) 135, 160, 200, 539
BmuI ACTGGG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 392
Bpu1102I GCTNAGC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 648
BpuMI CCSGG 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 42, 586
BsaWI WCCGGW 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 449
Bse21I CCTNAGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 108
BseAI TCCGGA 1 cut(s) 234
BseBI CCWGG 1 cut(s) 677
BseDI CCNNGG 2 cut(s) 42, 586
BseGI GGATG 3 cut(s) 175, 402, 515
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 3 cut(s) 42, 93, 405
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 2 cut(s) 221, 525
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 2 cut(s) 160, 310
BsgI GTGCAG 1 cut(s) 309
BshFI GGCC 4 cut(s) 47, 435, 496, 731
BsiHKAI GWGCWC 2 cut(s) 469, 481
BsiHKCI CYCGRG 1 cut(s) 585
BsiSI CCGG 2 cut(s) 44, 235
BslFI GGGAC 3 cut(s) 25, 419, 576
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 284
BsmFI GGGAC 3 cut(s) 25, 419, 576
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 4 cut(s) 47, 435, 496, 731
Bso31I GGTCTC 1 cut(s) 284
BsoBI CYCGRG 1 cut(s) 585
Bsp1286I GDGCHC 2 cut(s) 469, 481
Bsp13I TCCGGA 1 cut(s) 234
Bsp143I GATC 2 cut(s) 109, 547
Bsp1720I GCTNAGC 1 cut(s) 414
BspACI CCGC 1 cut(s) 276
BspANI GGCC 4 cut(s) 47, 435, 496, 731
BspCNI CTCAG 3 cut(s) 41, 92, 406
BspEI TCCGGA 1 cut(s) 234
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 592
BspQI GCTCTTC 1 cut(s) 486
BspTNI GGTCTC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 108
BsrI ACTGG 1 cut(s) 449
BssECI CCNNGG 2 cut(s) 42, 586
BssMI GATC 2 cut(s) 109, 547
Bst2UI CCWGG 1 cut(s) 677
Bst6I CTCTTC 2 cut(s) 486, 543
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 5 cut(s) 28, 49, 79, 392, 414
BstF5I GGATG 3 cut(s) 175, 402, 515
BstKTI GATC 2 cut(s) 112, 550
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 2 cut(s) 109, 547
BstMWI GCNNNNNNNGC 2 cut(s) 53, 485
BstNI CCWGG 1 cut(s) 677
BstNSI RCATGY 1 cut(s) 725
BstSCI CCNGG 2 cut(s) 42, 675
BstSLI GKGCMC 1 cut(s) 469
BstV1I GCAGC 2 cut(s) 160, 310
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
Bsu36I CCTNAGG 1 cut(s) 49
BsuRI GGCC 4 cut(s) 47, 435, 496, 731
BtsCI GGATG 3 cut(s) 175, 402, 515
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 354
CciI TCATGA 1 cut(s) 139
Cfr13I GGNCC 3 cut(s) 590, 673, 729
CsiI ACCWGGT 1 cut(s) 675
CviAII CATG 6 cut(s) 140, 166, 202, 319, 409, 722
DdeI CTNAG 5 cut(s) 28, 49, 79, 392, 414
DpnI GATC 2 cut(s) 111, 549
DpnII GATC 2 cut(s) 109, 547
DraIII CACNNNGTG 1 cut(s) 560
EaeI YGGCCR 1 cut(s) 433
Eam1104I CTCTTC 2 cut(s) 486, 543
EarI CTCTTC 2 cut(s) 486, 543
Ecl136II GAGCTC 1 cut(s) 479
Eco24I GRGCYC 1 cut(s) 481
Eco31I GGTCTC 1 cut(s) 284
Eco47I GGWCC 2 cut(s) 590, 673
Eco53kI GAGCTC 1 cut(s) 479
Eco81I CCTNAGG 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 585
EcoICRI GAGCTC 1 cut(s) 479
EcoO109I RGGNCCY 1 cut(s) 590
EcoRII CCWGG 1 cut(s) 675
EcoT22I ATGCAT 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 481
FaeI CATG 6 cut(s) 143, 169, 205, 322, 412, 725
FalI AAGNNNNNCTT 2 cut(s) 90, 122
FaqI GGGAC 3 cut(s) 25, 419, 576
FatI CATG 6 cut(s) 139, 165, 201, 318, 408, 721
FauNDI CATATG 1 cut(s) 296
Fnu4HI GCNGC 3 cut(s) 174, 276, 324
FokI GGATG 3 cut(s) 182, 409, 502
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 3 cut(s) 174, 276, 324
FspBI CTAG 5 cut(s) 161, 252, 402, 656, 704
GluI GCNGC 3 cut(s) 174, 276, 324
HaeIII GGCC 4 cut(s) 47, 435, 496, 731
HapII CCGG 2 cut(s) 44, 235
Hin1II CATG 6 cut(s) 143, 169, 205, 322, 412, 725
HinfI GANTC 4 cut(s) 77, 119, 380, 659
HpaII CCGG 2 cut(s) 44, 235
HphI GGTGA 2 cut(s) 186, 563
Hpy166II GTNNAC 2 cut(s) 11, 467
Hpy188I TCNGA 3 cut(s) 31, 368, 379
Hpy188III TCNNGA 6 cut(s) 116, 140, 235, 545, 585, 593
Hpy8I GTNNAC 2 cut(s) 11, 467
HpyAV CCTTC 2 cut(s) 273, 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 485
HpyF3I CTNAG 5 cut(s) 28, 49, 79, 392, 414
Hsp92II CATG 6 cut(s) 143, 169, 205, 322, 412, 725
Kpn2I TCCGGA 1 cut(s) 234
Kzo9I GATC 2 cut(s) 109, 547
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 1 cut(s) 527
LpnPI CCDG 9 cut(s) 57, 248, 316, 334, 369, 404, 462, 662, 689
Lsp1109I GCAGC 2 cut(s) 160, 310
LweI GCATC 4 cut(s) 135, 160, 200, 539
MabI ACCWGGT 1 cut(s) 675
MaeI CTAG 5 cut(s) 161, 252, 402, 656, 704
MaeIII GTNAC 2 cut(s) 74, 82
MalI GATC 2 cut(s) 111, 549
MboI GATC 2 cut(s) 109, 547
MboII GAAGA 4 cut(s) 218, 473, 530, 533
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 2 cut(s) 469, 481
MlsI TGGCCA 1 cut(s) 435
MluCI AATT 4 cut(s) 135, 422, 439, 599
MluNI TGGCCA 1 cut(s) 435
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 9 cut(s) 37, 199, 507, 546, 581, 621, 645, 664, 728
Mox20I TGGCCA 1 cut(s) 435
Mph1103I ATGCAT 1 cut(s) 193
MroI TCCGGA 1 cut(s) 234
MscI TGGCCA 1 cut(s) 435
MseI TTAA 2 cut(s) 335, 693
Msp20I TGGCCA 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 2 cut(s) 44, 235
MspR9I CCNGG 2 cut(s) 44, 677
Mva1269I GAATGC 1 cut(s) 222
MvaI CCWGG 1 cut(s) 677
MwoI GCNNNNNNNGC 2 cut(s) 53, 485
NciI CCSGG 1 cut(s) 44
NdeI CATATG 1 cut(s) 296
NdeII GATC 2 cut(s) 109, 547
NlaIII CATG 6 cut(s) 143, 169, 205, 322, 412, 725
NlaIV GGNNCC 1 cut(s) 592
NmuCI GTSAC 2 cut(s) 74, 82
NsiI ATGCAT 1 cut(s) 193
NspI RCATGY 1 cut(s) 725
PagI TCATGA 1 cut(s) 139
PciI ACATGT 1 cut(s) 721
PciSI GCTCTTC 1 cut(s) 486
PctI GAATGC 1 cut(s) 222
PfeI GAWTC 3 cut(s) 119, 380, 659
PkrI GCNGC 3 cut(s) 175, 277, 325
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PpuMI RGGWCCY 1 cut(s) 590
PscI ACATGT 1 cut(s) 721
Psp124BI GAGCTC 1 cut(s) 481
Psp5II RGGWCCY 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 675
PspGI CCWGG 1 cut(s) 675
PspN4I GGNNCC 1 cut(s) 592
PspPI GGNCC 3 cut(s) 590, 673, 729
PspPPI RGGWCCY 1 cut(s) 590
PsuI RGATCY 1 cut(s) 547
SacI GAGCTC 1 cut(s) 481
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 2 cut(s) 335, 693
SatI GCNGC 3 cut(s) 174, 276, 324
Sau3AI GATC 2 cut(s) 109, 547
Sau96I GGNCC 3 cut(s) 590, 673, 729
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 2 cut(s) 44, 677
SduI GDGCHC 2 cut(s) 469, 481
SexAI ACCWGGT 1 cut(s) 675
SfaNI GCATC 4 cut(s) 135, 160, 200, 539
SinI GGWCC 2 cut(s) 590, 673
SmlI CTYRAG 1 cut(s) 663
SmoI CTYRAG 1 cut(s) 663
Sse9I AATT 4 cut(s) 135, 422, 439, 599
SsiI CCGC 1 cut(s) 276
SspI AATATT 1 cut(s) 339
SspMI CTAG 5 cut(s) 161, 252, 402, 656, 704
SstI GAGCTC 1 cut(s) 481
StyD4I CCNGG 2 cut(s) 42, 675
TaqI TCGA 1 cut(s) 484
TasI AATT 4 cut(s) 135, 422, 439, 599
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 3 cut(s) 119, 380, 659
Tru1I TTAA 2 cut(s) 335, 693
Tru9I TTAA 2 cut(s) 335, 693
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 2 cut(s) 74, 82
TseI GCWGC 2 cut(s) 173, 323
Tsp45I GTSAC 2 cut(s) 74, 82
TspDTI ATGAA 3 cut(s) 128, 156, 612
TspRI CASTG 1 cut(s) 87
VneI GTGCAC 1 cut(s) 465
VpaK11BI GGWCC 2 cut(s) 590, 673
XapI RAATTY 2 cut(s) 135, 439
XceI RCATGY 1 cut(s) 725
XspI CTAG 5 cut(s) 161, 252, 402, 656, 704
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.