MD17G1137000.v1.1

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0011987
Physical Location & Seq
Reverse (-)
12257813 .. 12262196
4384 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1137000.v1.1.491

Sequence Viewer

Length: 2490 bp
ATGGCTTCCTCTCCATCTCCCGCCTCCTCATCCGCTTCCCCACTGCAACGCCTCTCCACCTTCAAATCCTCAACTCCCACCTCCGCCACACCAACTACCGCCACCACATCCCCCTTAGACACATTCGCCTCGGACCCAATCTTCTCTGTCTTCCTCTCCCCCTCTTTCTCCTCCACCACCTTCTCCTCCGCCGCCCTCTCCTCTGGCTCCCCCGCCTCCACCGCCGAAAAGCTCCAGCATGCCATCCGCCTCCTCGAGTCTCAGCTCCGCTCCGAGGTTCTCTCCCGCCACTCCGACCTCCTCGCCCAGCTCTCTTCCCTCCACCACGCCGATCACGCCCTCTCCACCGTCAGATCCTCCGTTGCCGCCCTCCAGTCCTCCCTTCGCCACACCCGATCCGAGCTCTCCGACCCCCTCGCCTCCATCCGCACCCTCACCATCCAGCTCCAAAATCTCCATGCCTCCTCCGATCTTCTCCACCACTCCATCAGAGCCCTCCGCCTCTCCAGTAAGCTCCGATCCCTCGCCTCCGACGGCACTGAGCGCCTCGATCTCGCCAAGGCCGCTCAGCTCCATTGCGAGATCTTAGCTCTCTACAACGAATACGACCTCGCCGGCATTGATGTGGTCGATTCCGAACTCGAGTGGGTCAAAGAGACCGGAGACAAGTTGCGTACGGAGGCGATGAAGGTACTGGAGAGAGGGATGGAGGGTTTGAACCAGGCCGAGGTGGGGACTGGGCTGCAGGTGTTTTACAATTTGGGGGAGCTGAGGCAGGCTATGGATCAGCTGATTATCAAGTATAAGGGTATGGGGATGAAGAGTGTGAGTGCAGCATTGGATATGAAGGCAATTTCGGGGTCGGGAGGAAGCGGGTTTGGGCCGGGTGGGATCAGAGGAGGCGGGGGCACGCCGCAGATTGGAGGTGGTGGAAAGGCGAGGGAGGCGATTTGGCAGAGGATGGGGAGTTGTATGGATCAGCTGCATTCGATAATGGTTGCGGTGTGGCACTTGCAGAGGGTGTTGTCGAAGAAGCGCGACCCGTTTACTCATGTTTTGTTGCTTGATGAGGTTATTCAGGAAGGTGAGCCCATGATAACAGATAGAGTGTGGGAGGCCCTTGTGAAGGCTTTTGCCAACCAAATGAAGTCTGCTTTCACTGCATCAAGTTTTGTTAAGGAGGTATTCACTATGGGGTATCCAAAGCTTTTCTCTATGATAGATAATCTTCTTGAAAGAATTGCACGTGACACTGATGTCAAAGGAGTTTTACCGGCTATTACGTCAGAGGGAAAGGAACAACTGGTTGCAGCTGTTGAAATATTCCAAACATCATTCTTGGCACTCTGCTTGGGTCGTCTATCAGATCTTGTGAATACTGTATTTCCAGTTTCCAGCCGTGGAAGTGTTCCCTCTAAAGAACAGATCTCAAGAATTATATCACGGATTCAAGAAGAAATAGAATCTGTTCAGTTGGATGGGCGCTTGACTCTTCTTGTATTGCGAGAAATTGGCAAGGTTCTTCTCTTGCTTGGTGAACGAGCTGAATACCAGATATCAACTGGTCCTGAAGCACGTCAAGTCAATGGTCCTGCAACCCCTGCACAGCTCAAGAACTTCATGTTATGTCAGCATCTCCAAGAAATTCATACACGCATATCATCTATGATTGCAGGACTGCCCACTATTGCTTCAGATGTGTTGTCTCCCTCATTAGGTGTAATATATGGGGTTGCTTGTGACTCAGTGACGTCCTTGTTCCAAGCTATGCTTGAGCGTCTGGAATCTTGCATATTGCAAATTCATGAACAGAGATTCGGTGTGCTAGGCATGGATGCCGCTATGGACAACAATGCATCACCTTACATGGAGGAGTTGCAAAAGTGCATTCTTCACTTTCGTAGTGAGTTCCTGTCTAGGGTGTTGCCTTCGAAAACTGCTCCCGTCGGAACAGAGACCATATGCACCAGACTCGTTAGGAGCATGGCTGCACGGGTTTTAATATTCTTTATCAGGCATGCTTCTCTAGTCAGACCCCTTTCAGAATCAGGGAAGCTAAGGATGGCTAGGGACATGGCTGAGCTGGAATTAGCAGTAGGGCAAAACTTGTTCCCAGTAGAGCAACTTGGTGCACCGTACAGAGCCCTTCGAGCATTTCGACCTCTCATCTTCTTGGAGACATCCCAACTTGGAGGATCTCCTCTTCTTCAAGATCTACCACCAAGTGTCGTACTTCACCATCTTTACTCCCGAGGTCCCGATGAATTGCAATCACCATTGCAAAGGAACAAACTAACACCTCTTCAATACTCATTGTGGCTAGATTCTCAAGGAGAGGATCAGGTATGGAAGGGTATCAAAGCAACACTGGATGACTATGCCACGCATGTTAGGGCCCGAGGTGACAAAGAGTTCAGCCCTGTCTATCCTCTAATGCTTCGGCTAGGGTCATCTTTGACTGAAAATGCTCCTGCGACCCAAAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COG5

Protein Analysis

830

Amino Acids

90.56

Weight (kDa)

6.74

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG5_N PF10392 50 - 172 8.1e-24 Conserved oligomeric Golgi complex subunit 5, N-terminal
COG5_C PF20649 204 - 410 7.7e-54 Conserved oligomeric Golgi complex subunit 5, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67930
fragaria_vesca FvH4_6g38530
malus_domestica MD09G1149900.v1.1 MD17G1137000.v1.1
prunus_persica Prupe.3G175300_v2.0.a1 Prupe.3G175300_v2.0.a1
pyrus_communis pycom09g06940 pycom17g13060
rosa_chinensis RchiOBHm_Chr2g0151781
rosa_laevigata RLG00000020581
rosa_multiflora Rmu_co8286875.1_g000001
rosa_roxburghii Rroxscaffold_2G00096160
rosa_rugosa Rorug02G0429000
rosa_samantha Rh2AG489800 Rh2BG502400 Rh2CG476100 Rh2DG513500
rosa_wichuraiana Rw2G040160 Rw2G040270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 736
AasI GACNNNNNNGTC 2 cut(s) 1256, 2482
AatII GACGTC 1 cut(s) 1754
Acc36I ACCTGC 1 cut(s) 736
AccBSI CCGCTC 2 cut(s) 270, 566
AccII CGCG 1 cut(s) 1038
AclWI GGATC 8 cut(s) 348, 390, 513, 792, 899, 984, 2203, 2346
AcsI RAATTY 2 cut(s) 1644, 1800
AcuI CTGAAG 2 cut(s) 1590, 1677
AcvI CACGTG 1 cut(s) 1247
AcyI GRCGYC 1 cut(s) 1751
AdeI CACNNNGTG 1 cut(s) 2225
AfaI GTAC 4 cut(s) 676, 693, 2138, 2232
AfiI CCNNNNNNNGG 7 cut(s) 274, 727, 732, 920, 1126, 1715, 1918
AgsI TTSAA 7 cut(s) 64, 718, 1235, 1319, 1451, 2210, 2306
AjiI CACGTC 1 cut(s) 1577
AjnI CCWGG 1 cut(s) 720
Alw21I GWGCWC 2 cut(s) 405, 2134
Alw26I GTCTC 6 cut(s) 264, 650, 657, 1710, 1949, 2171
Alw44I GTGCAC 1 cut(s) 2130
AlwI GGATC 8 cut(s) 348, 390, 513, 792, 899, 984, 2203, 2346
Ama87I CYCGRG 4 cut(s) 254, 641, 2250, 2397
AoxI GGCC 5 cut(s) 561, 723, 881, 1116, 2394
ApaI GGGCCC 1 cut(s) 2398
ApaLI GTGCAC 1 cut(s) 2130
ApeKI GCWGC 5 cut(s) 742, 833, 982, 1310, 1988
ApoI RAATTY 2 cut(s) 1644, 1800
Asp700I GAANNNNTTC 1 cut(s) 1467
AspLEI GCGC 3 cut(s) 546, 1038, 1485
AspS9I GGNCC 8 cut(s) 133, 881, 1117, 1565, 1589, 2255, 2394, 2395
AsuC2I CCSGG 1 cut(s) 885
AsuHPI GGTGA 7 cut(s) 427, 1097, 1547, 1851, 2228, 2265, 2414
AsuII TTCGAA 1 cut(s) 1931
AvaI CYCGRG 4 cut(s) 254, 641, 2250, 2397
AvaII GGWCC 4 cut(s) 133, 1565, 1589, 2255
BaeGI GKGCMC 3 cut(s) 911, 2134, 2398
BanII GRGCYC 5 cut(s) 405, 496, 1092, 2146, 2398
BbrPI CACGTG 1 cut(s) 1247
BbsI GAAGAC 1 cut(s) 142
Bbv12I GWGCWC 2 cut(s) 405, 2134
BbvCI CCTCAGC 1 cut(s) 770
BbvI GCAGC 5 cut(s) 729, 845, 969, 1322, 1975
BceAI ACGGC 2 cut(s) 550, 1383
BcgI CGANNNNNNTGC 2 cut(s) 1954, 1988
BciT130I CCWGG 1 cut(s) 722
BciVI GTATCC 1 cut(s) 1209
BcnI CCSGG 1 cut(s) 885
BcoDI GTCTC 6 cut(s) 264, 650, 657, 1710, 1949, 2171
BfaI CTAG 6 cut(s) 1826, 1917, 2027, 2067, 2321, 2444
BfmI CTRYAG 1 cut(s) 743
BfoI RGCGCY 2 cut(s) 547, 1486
BfuAI ACCTGC 1 cut(s) 736
BfuI GTATCC 1 cut(s) 1209
BglII AGATCT 4 cut(s) 582, 1366, 1425, 2212
BlpI GCTNAGC 2 cut(s) 567, 2079
Bme1390I CCNGG 2 cut(s) 722, 885
Bme18I GGWCC 4 cut(s) 133, 1565, 1589, 2255
BmeT110I CYCGRG 4 cut(s) 254, 641, 2250, 2397
BmgBI CACGTC 1 cut(s) 1577
BmgT120I GGNCC 8 cut(s) 133, 881, 1117, 1565, 1589, 2255, 2394, 2395
BmiI GGNNCC 4 cut(s) 135, 208, 2257, 2396
BmrFI CCNGG 2 cut(s) 722, 885
BmrI ACTGGG 2 cut(s) 747, 2108
BmsI GCATC 4 cut(s) 1172, 1642, 1825, 1865
BmuI ACTGGG 2 cut(s) 747, 2108
BpiI GAAGAC 1 cut(s) 142
BplI GAGNNNNNCTC 2 cut(s) 266, 298
BpmI CTGGAG 4 cut(s) 218, 356, 490, 716
Bpu10I CCTNAGC 2 cut(s) 770, 2057
Bpu1102I GCTNAGC 2 cut(s) 567, 2079
Bpu14I TTCGAA 1 cut(s) 1931
BpuEI CTTGAG 4 cut(s) 1414, 1595, 1793, 2313
BpuMI CCSGG 1 cut(s) 885
BsaAI YACGTR 1 cut(s) 1247
BsaHI GRCGYC 1 cut(s) 1751
BsaI GGTCTC 2 cut(s) 650, 1949
BsaJI CCNNGG 7 cut(s) 129, 273, 558, 726, 1399, 2251, 2398
BsaWI WCCGGW 1 cut(s) 659
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 7 cut(s) 274, 727, 732, 920, 1126, 1715, 1918
Bse118I RCCGGY 2 cut(s) 614, 1273
Bse1I ACTGG 9 cut(s) 373, 507, 699, 742, 1308, 1388, 1567, 2114, 2373
Bse3DI GCAATG 2 cut(s) 574, 2276
BseBI CCWGG 1 cut(s) 722
BseDI CCNNGG 7 cut(s) 129, 273, 558, 726, 1399, 2251, 2398
BseLI CCNNNNNNNGG 7 cut(s) 274, 727, 732, 920, 1126, 1715, 1918
BseMI GCAATG 2 cut(s) 574, 2276
BseMII CTCAG 6 cut(s) 275, 531, 581, 761, 1758, 2070
BseNI ACTGG 9 cut(s) 373, 507, 699, 742, 1308, 1388, 1567, 2114, 2373
BseSI GKGCMC 3 cut(s) 911, 2134, 2398
BseXI GCAGC 5 cut(s) 729, 845, 969, 1322, 1975
BseYI CCCAGC 1 cut(s) 306
BsgI GTGCAG 3 cut(s) 852, 1587, 1974
Bsh1236I CGCG 1 cut(s) 1038
BshFI GGCC 5 cut(s) 563, 725, 883, 1118, 2396
BsiHKAI GWGCWC 2 cut(s) 405, 2134
BsiHKCI CYCGRG 4 cut(s) 254, 641, 2250, 2397
BsiSI CCGG 4 cut(s) 615, 660, 884, 1274
BsiWI CGTACG 1 cut(s) 674
BslFI GGGAC 3 cut(s) 748, 2084, 2241
BslI CCNNNNNNNGG 7 cut(s) 274, 727, 732, 920, 1126, 1715, 1918
BsmAI GTCTC 6 cut(s) 264, 650, 657, 1710, 1949, 2171
BsmFI GGGAC 3 cut(s) 748, 2084, 2241
BsmI GAATGC 2 cut(s) 985, 1887
BsnI GGCC 5 cut(s) 563, 725, 883, 1118, 2396
Bso31I GGTCTC 2 cut(s) 650, 1949
BsoBI CYCGRG 4 cut(s) 254, 641, 2250, 2397
Bsp119I TTCGAA 1 cut(s) 1931
Bsp120I GGGCCC 1 cut(s) 2394
Bsp1286I GDGCHC 7 cut(s) 405, 496, 911, 1092, 2134, 2146, 2398
Bsp1720I GCTNAGC 2 cut(s) 567, 2079
BspANI GGCC 5 cut(s) 563, 725, 883, 1118, 2396
BspCNI CTCAG 6 cut(s) 274, 532, 580, 762, 1757, 2071
BspFNI CGCG 1 cut(s) 1038
BspHI TCATGA 1 cut(s) 1804
BspLI GGNNCC 4 cut(s) 135, 208, 2257, 2396
BspMAI CTGCAG 1 cut(s) 747
BspMI ACCTGC 1 cut(s) 736
BspPI GGATC 8 cut(s) 348, 390, 513, 792, 899, 984, 2203, 2346
BspT104I TTCGAA 1 cut(s) 1931
BspTNI GGTCTC 2 cut(s) 650, 1949
BsrBI CCGCTC 2 cut(s) 270, 566
BsrDI GCAATG 2 cut(s) 574, 2276
BsrFI RCCGGY 2 cut(s) 614, 1273
BsrI ACTGG 9 cut(s) 373, 507, 699, 742, 1308, 1388, 1567, 2114, 2373
BssAI RCCGGY 2 cut(s) 614, 1273
BssECI CCNNGG 7 cut(s) 129, 273, 558, 726, 1399, 2251, 2398
BssNI GRCGYC 1 cut(s) 1751
BssT1I CCWWGG 1 cut(s) 558
Bst2UI CCWGG 1 cut(s) 722
Bst4CI ACNGT 3 cut(s) 349, 1381, 2136
Bst6I CTCTTC 5 cut(s) 319, 815, 1497, 2208, 2307
BstACI GRCGYC 1 cut(s) 1751
BstAPI GCANNNNNTGC 1 cut(s) 1601
BstBAI YACGTR 1 cut(s) 1247
BstBI TTCGAA 1 cut(s) 1931
BstC8I GCNNGC 5 cut(s) 240, 616, 777, 911, 2019
BstDEI CTNAG 9 cut(s) 115, 261, 540, 567, 586, 770, 1744, 2057, 2079
BstDSI CCRYGG 1 cut(s) 1399
BstENI CCTNNNNNAGG 1 cut(s) 1124
BstFNI CGCG 1 cut(s) 1038
BstH2I RGCGCY 2 cut(s) 547, 1486
BstHHI GCGC 3 cut(s) 546, 1038, 1485
BstMAI GTCTC 6 cut(s) 264, 650, 657, 1710, 1949, 2171
BstMWI GCNNNNNNNGC 8 cut(s) 221, 335, 543, 563, 944, 1160, 1601, 2150
BstNI CCWGG 1 cut(s) 722
BstNSI RCATGY 3 cut(s) 242, 2021, 2390
BstSCI CCNGG 2 cut(s) 720, 883
BstSFI CTRYAG 1 cut(s) 743
BstSLI GKGCMC 3 cut(s) 911, 2134, 2398
BstUI CGCG 1 cut(s) 1038
BstV1I GCAGC 5 cut(s) 729, 845, 969, 1322, 1975
BstV2I GAAGAC 1 cut(s) 142
BstX2I RGATCY 6 cut(s) 353, 582, 1366, 1425, 2195, 2212
BstYI RGATCY 6 cut(s) 353, 582, 1366, 1425, 2195, 2212
BsuI GTATCC 1 cut(s) 1209
BsuRI GGCC 5 cut(s) 563, 725, 883, 1118, 2396
BtgI CCRYGG 1 cut(s) 1399
BtgZI GCGATG 1 cut(s) 698
BtrI CACGTC 1 cut(s) 1577
BtsI GCAGTG 2 cut(s) 41, 1158
BtsIMutI CAGTG 6 cut(s) 41, 537, 1158, 1251, 1752, 2366
BveI ACCTGC 1 cut(s) 736
Cac8I GCNNGC 5 cut(s) 240, 616, 777, 911, 2019
CciI TCATGA 1 cut(s) 1804
CfoI GCGC 3 cut(s) 546, 1038, 1485
Cfr10I RCCGGY 2 cut(s) 614, 1273
Cfr13I GGNCC 8 cut(s) 133, 881, 1117, 1565, 1589, 2255, 2394, 2395
CseI GACGC 1 cut(s) 1766
Csp6I GTAC 4 cut(s) 675, 692, 2137, 2231
CviQI GTAC 4 cut(s) 675, 692, 2137, 2231
DdeI CTNAG 9 cut(s) 115, 261, 540, 567, 586, 770, 1744, 2057, 2079
DraIII CACNNNGTG 1 cut(s) 2225
DrdI GACNNNNNNGTC 2 cut(s) 1256, 2482
DseDI GACNNNNNNGTC 2 cut(s) 1256, 2482
Eam1104I CTCTTC 5 cut(s) 319, 815, 1497, 2208, 2307
EarI CTCTTC 5 cut(s) 319, 815, 1497, 2208, 2307
EciI GGCGGA 4 cut(s) 73, 178, 236, 488
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 558
Eco24I GRGCYC 5 cut(s) 405, 496, 1092, 2146, 2398
Eco31I GGTCTC 2 cut(s) 650, 1949
Eco32I GATATC 1 cut(s) 1557
Eco47I GGWCC 4 cut(s) 133, 1565, 1589, 2255
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 2 cut(s) 1590, 1677
Eco72I CACGTG 1 cut(s) 1247
Eco88I CYCGRG 4 cut(s) 254, 641, 2250, 2397
EcoICRI GAGCTC 1 cut(s) 403
EcoNI CCTNNNNNAGG 1 cut(s) 1124
EcoO109I RGGNCCY 3 cut(s) 1117, 2255, 2394
EcoRII CCWGG 1 cut(s) 720
EcoRV GATATC 1 cut(s) 1557
EcoT14I CCWWGG 1 cut(s) 558
EcoT22I ATGCAT 1 cut(s) 1858
EcoT38I GRGCYC 5 cut(s) 405, 496, 1092, 2146, 2398
ErhI CCWWGG 1 cut(s) 558
FalI AAGNNNNNCTT 2 cut(s) 1755, 1787
FaqI GGGAC 3 cut(s) 748, 2084, 2241
FauI CCCGC 5 cut(s) 28, 220, 293, 866, 896
FauNDI CATATG 1 cut(s) 1961
FriOI GRGCYC 5 cut(s) 405, 496, 1092, 2146, 2398
FspBI CTAG 6 cut(s) 1826, 1917, 2027, 2067, 2321, 2444
GlaI GCGC 3 cut(s) 545, 1037, 1484
GsaI CCCAGC 1 cut(s) 310
GsuI CTGGAG 4 cut(s) 218, 356, 490, 716
HaeII RGCGCY 2 cut(s) 547, 1486
HaeIII GGCC 5 cut(s) 563, 725, 883, 1118, 2396
HapII CCGG 4 cut(s) 615, 660, 884, 1274
HgaI GACGC 1 cut(s) 1766
HhaI GCGC 3 cut(s) 546, 1038, 1485
Hin1I GRCGYC 1 cut(s) 1751
Hin6I GCGC 3 cut(s) 544, 1036, 1483
HinP1I GCGC 3 cut(s) 544, 1036, 1483
HindIII AAGCTT 1 cut(s) 1205
HpaII CCGG 4 cut(s) 615, 660, 884, 1274
HphI GGTGA 7 cut(s) 427, 1097, 1547, 1851, 2228, 2265, 2414
Hpy166II GTNNAC 3 cut(s) 1047, 1538, 2132
Hpy8I GTNNAC 3 cut(s) 1047, 1538, 2132
Hpy99I CGWCG 2 cut(s) 536, 1949
HpyCH4III ACNGT 3 cut(s) 349, 1381, 2136
HpyCH4IV ACGT 4 cut(s) 1246, 1283, 1576, 1751
HpyF10VI GCNNNNNNNGC 8 cut(s) 221, 335, 543, 563, 944, 1160, 1601, 2150
HpyF3I CTNAG 9 cut(s) 115, 261, 540, 567, 586, 770, 1744, 2057, 2079
HpySE526I ACGT 4 cut(s) 1246, 1283, 1576, 1751
Hsp92I GRCGYC 1 cut(s) 1751
HspAI GCGC 3 cut(s) 544, 1036, 1483
KroI GCCGGC 1 cut(s) 614
KroNI GCCGGC 1 cut(s) 616
Lsp1109I GCAGC 5 cut(s) 729, 845, 969, 1322, 1975
LweI GCATC 4 cut(s) 1172, 1642, 1825, 1865
MaeI CTAG 6 cut(s) 1826, 1917, 2027, 2067, 2321, 2444
MaeII ACGT 4 cut(s) 1246, 1283, 1576, 1751
MaeIII GTNAC 4 cut(s) 1247, 1739, 1747, 2402
MbiI CCGCTC 2 cut(s) 270, 566
MflI RGATCY 6 cut(s) 353, 582, 1366, 1425, 2195, 2212
MhlI GDGCHC 7 cut(s) 405, 496, 911, 1092, 2134, 2146, 2398
MluCI AATT 9 cut(s) 757, 852, 1239, 1434, 1509, 1644, 1800, 2087, 2264
MlyI GAGTC 4 cut(s) 266, 1483, 1736, 1965
MmeI TCCRAC 5 cut(s) 318, 432, 555, 1455, 1927
Mph1103I ATGCAT 1 cut(s) 1858
MroNI GCCGGC 1 cut(s) 614
MroXI GAANNNNTTC 1 cut(s) 1467
MseI TTAA 2 cut(s) 1176, 2000
MslI CAYNNNNRTG 1 cut(s) 623
MspA1I CMGCKG 3 cut(s) 790, 982, 1313
MspI CCGG 4 cut(s) 615, 660, 884, 1274
MspR9I CCNGG 2 cut(s) 722, 885
Mva1269I GAATGC 2 cut(s) 985, 1887
MvaI CCWGG 1 cut(s) 722
MvnI CGCG 1 cut(s) 1038
MwoI GCNNNNNNNGC 8 cut(s) 221, 335, 543, 563, 944, 1160, 1601, 2150
NaeI GCCGGC 1 cut(s) 616
NciI CCSGG 1 cut(s) 885
NdeI CATATG 1 cut(s) 1961
NgoMIV GCCGGC 1 cut(s) 614
NlaIV GGNNCC 4 cut(s) 135, 208, 2257, 2396
NmeAIII GCCGAG 1 cut(s) 751
NmuCI GTSAC 4 cut(s) 1247, 1739, 1747, 2402
NsiI ATGCAT 1 cut(s) 1858
NspI RCATGY 3 cut(s) 242, 2021, 2390
NspV TTCGAA 1 cut(s) 1931
PaeI GCATGC 2 cut(s) 242, 2021
PaeR7I CTCGAG 2 cut(s) 254, 641
PagI TCATGA 1 cut(s) 1804
PaqCI CACCTGC 1 cut(s) 736
PcsI WCGNNNNNNNCGW 2 cut(s) 391, 2155
PctI GAATGC 2 cut(s) 985, 1887
PdiI GCCGGC 1 cut(s) 616
PdmI GAANNNNTTC 1 cut(s) 1467
PfeI GAWTC 7 cut(s) 632, 1447, 1463, 1784, 1815, 2045, 2324
Pfl23II CGTACG 1 cut(s) 674
PleI GAGTC 4 cut(s) 265, 1483, 1736, 1965
PmaCI CACGTG 1 cut(s) 1247
PmlI CACGTG 1 cut(s) 1247
PpsI GAGTC 4 cut(s) 265, 1483, 1736, 1965
Ppu21I YACGTR 1 cut(s) 1247
PpuMI RGGWCCY 1 cut(s) 2255
Psp124BI GAGCTC 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 2255
Psp6I CCWGG 1 cut(s) 720
PspCI CACGTG 1 cut(s) 1247
PspFI CCCAGC 1 cut(s) 306
PspGI CCWGG 1 cut(s) 720
PspLI CGTACG 1 cut(s) 674
PspN4I GGNNCC 4 cut(s) 135, 208, 2257, 2396
PspOMI GGGCCC 1 cut(s) 2394
PspPI GGNCC 8 cut(s) 133, 881, 1117, 1565, 1589, 2255, 2394, 2395
PspPPI RGGWCCY 1 cut(s) 2255
PspXI VCTCGAGB 2 cut(s) 254, 641
PstI CTGCAG 1 cut(s) 747
PsuI RGATCY 6 cut(s) 353, 582, 1366, 1425, 2195, 2212
PvuII CAGCTG 3 cut(s) 790, 982, 1313
RsaI GTAC 4 cut(s) 676, 693, 2138, 2232
RsaNI GTAC 4 cut(s) 675, 692, 2137, 2231
RseI CAYNNNNRTG 1 cut(s) 623
SacI GAGCTC 1 cut(s) 405
SaqAI TTAA 2 cut(s) 1176, 2000
Sau96I GGNCC 8 cut(s) 133, 881, 1117, 1565, 1589, 2255, 2394, 2395
SchI GAGTC 4 cut(s) 266, 1483, 1736, 1965
ScrFI CCNGG 2 cut(s) 722, 885
SduI GDGCHC 7 cut(s) 405, 496, 911, 1092, 2134, 2146, 2398
SfaNI GCATC 4 cut(s) 1172, 1642, 1825, 1865
SfcI CTRYAG 1 cut(s) 743
Sfr274I CTCGAG 2 cut(s) 254, 641
SfuI TTCGAA 1 cut(s) 1931
SinI GGWCC 4 cut(s) 133, 1565, 1589, 2255
SlaI CTCGAG 2 cut(s) 254, 641
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 6 cut(s) 254, 641, 1429, 1610, 1772, 2328
SmoI CTYRAG 6 cut(s) 254, 641, 1429, 1610, 1772, 2328
SphI GCATGC 2 cut(s) 242, 2021
Sse9I AATT 9 cut(s) 757, 852, 1239, 1434, 1509, 1644, 1800, 2087, 2264
SspI AATATT 2 cut(s) 1323, 2004
SspMI CTAG 6 cut(s) 1826, 1917, 2027, 2067, 2321, 2444
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 720, 883
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 3 cut(s) 349, 1381, 2136
TaiI ACGT 4 cut(s) 1249, 1286, 1579, 1754
TaqI TCGA 9 cut(s) 255, 549, 630, 642, 989, 1028, 1931, 2149, 2158
TasI AATT 9 cut(s) 757, 852, 1239, 1434, 1509, 1644, 1800, 2087, 2264
TauI GCSGC 5 cut(s) 194, 368, 566, 916, 1841
TfiI GAWTC 7 cut(s) 632, 1447, 1463, 1784, 1815, 2045, 2324
Tru1I TTAA 2 cut(s) 1176, 2000
Tru9I TTAA 2 cut(s) 1176, 2000
TscAI CASTG 6 cut(s) 48, 544, 1165, 1258, 1752, 2373
TseFI GTSAC 4 cut(s) 1247, 1739, 1747, 2402
TseI GCWGC 5 cut(s) 742, 833, 982, 1310, 1988
Tsp45I GTSAC 4 cut(s) 1247, 1739, 1747, 2402
TspDTI ATGAA 9 cut(s) 701, 833, 860, 1160, 1609, 1637, 1793, 1821, 2277
TspGWI ACGGA 3 cut(s) 349, 692, 1459
TspRI CASTG 6 cut(s) 48, 544, 1165, 1258, 1752, 2373
VneI GTGCAC 1 cut(s) 2130
VpaK11BI GGWCC 4 cut(s) 133, 1565, 1589, 2255
XagI CCTNNNNNAGG 1 cut(s) 1124
XapI RAATTY 2 cut(s) 1644, 1800
XceI RCATGY 3 cut(s) 242, 2021, 2390
XcmI CCANNNNNNNNNTGG 1 cut(s) 1559
XhoI CTCGAG 2 cut(s) 254, 641
XmnI GAANNNNTTC 1 cut(s) 1467
XspI CTAG 6 cut(s) 1826, 1917, 2027, 2067, 2321, 2444
ZraI GACGTC 1 cut(s) 1752
Zsp2I ATGCAT 1 cut(s) 1858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.