Rh2AG489800

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011987
Physical Location & Seq
Forward (+)
71179258 .. 71184024
4767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG489800.1

Sequence Viewer

Length: 2472 bp
ATGGCCAGTTCTCCAGCCTCCACCGCATCTCCACTCCAACGCCTCTCCACCTTCAAAAGCCCACCAACCCCCGCCACCCCCGCCGCCGGCGCCGCCTCCCCACTCGACACCTTCGCCGCCGATCCCATTTTCTCGGCCTTCCTCTCCCCCTCCTTCTCCTCCACCTCTTTCTCCTCCGCCGCCCTCTCCTCCGGCTCCCCCGCCTCCACCGCCGAGAAGCTCCAGAACGCCATCCGCCTCCTCGAGTCCCAGCTCCGGTCCGAGGTCCTCTCCCGCCACTCCGACCTCCTCTCCCAGCTCTCCTCCCTCCAGCACGCCGACCACGCCCTCTCCACCGTCCGATCCTCCGTCCACTCCCTCCAGTCCTCCCTCCGCCACACCCGATCCGAGCTCTCCGACCCCCTCCGCTCCATCACCGCCCTCACTCTCCAGCTCTCCAACCTCCACGCCACCTCCGAGCTCCTCCACCACACCCTCCGCGCCCTCCGCCTCTCCAAGAAGCTCCGCGACCTCGCCGCCGACCCCGAGAAGATCGATCTCGCCAAGGCCGCCCAGCTGCATTGCGAGATCTTGGCGCTCTACGACGAGTACGATCTCTCCGGCATCGAAGTCGTCGAGGAGGAGCTCGGCTGGGTCAGAGAGACCGGCGACAAGTTGCGCGGCGAGGCCATGAAGGCGTTGGAGCTAGGGATGGAGGGGTTGAATCAGGGGGAGGTGGCGATCGGGTTGCAGGTGTTTTACAATCTGGGAGAGCTGAAGCCGTCTATGGAGCAATTGATTGGGAAGTACAAGGGTATGGGAGTGAAGAGTATCAGTGTGGCACTGGATATGAAGGCCATTTCCGGGTCGGTGGGAAGCGGGTTTGGGCCTGGAGGGATTAGAGGGAGTGGGACGCCGCAGATTGGCGGCGGAGCCAAGGCGAGGGATGGGCTTTGGCAGAGAATGGGGACGTGTATGGATCAGTTGCATTCCATCATGGTTGCTGTGTGGCACCTGCAGAAGGTGTTGTCCAAGAAACGGGATCCGTTTACGCATGTGTTGCTGCTTGATGAAGTTATTAAGGAAGGGGAGCCCATGATAACAGATAGAGTGTGGGAGGCCCTTGTGAAGGCTTTTGCCAACCAAATGAAGTCTGCTTTCTCTGCATCAAGTTTTGTGAAAGAGATATTCACCATGGGGTATCCAAAGCTTTTTGCTATGATAGATAACCTTCTTGAAAGAATTTCACGTGACACAGATGTGAAAGGGGTTCTACCAGCTATTACTTCACAGGGAAAAGAACAACTGGTTGCAGCTGTTGAAATTTTCCAGAATTCATTCTTGGCTCTCTGCCTTAGTCGTCTGTCAGATCTTGTGAATACTGTATTTCCTGTATCAAGCCGTGGGAGTGTTCCCTCTAAAGACCATATCTCAAGAATCATTGCACGGATTCAGGAAGAAATTGAATCTGTTCAGTTGGATGCGCGCCTGACTCTTCTTGTATTGCGTGAGATCGGCAAGGTTCTTCTACTGCTTTCTGAACGAGCTGAATACCAGATATCAACTGGTCCTGAATCACGCCAAGTCAATGGTCCTGCAACTCCAGCCCAACTCAAGAACTTCATGCTATGTCAGCATCTCCAGGAAATTCATACACGCATATCGTCAATGATTAGTGGACTGCCCACTATTGCCTCAGATGTGCTGTCCCCGGCATTAGGTGCAATATATGGGGTTGCTTGTGACTCAGTGACAACCTTGTTCCAAGCCATGCTTGATCGTCTTGAATCTTGCATCTTGCAAATTCATGAACAGAAGTTTGGTGTGCTAGGCATGGATGCTGCTATGGATAACAATGCATCACCTTACATGGAGGAGTTGCAGAAGTGCATTCTTCACTTCCGGAGTGAGTTCCTATCTAGGCTGTTGCCTTCAAAAACTGCCGCTGTGGGAGTAGAGACCATATGCACCAGACTTGTTAGAAGCATGGCTGCACGGGTTTTAATATTTTTTATCAGGCACGCTTCTCTTGTCAGACCCCTTTCAGAATCAGGGAAGCTAAGGATGGCTAGGGACATGGCTGAGCTGGAATTAGCTGTTGGCCAAAATTTGTTCCCAGTAGAGCAACTTGGGGCACCATATAGAGCTCTTCGAGCATTTCGGCCTCTCATTTTCTTGGACACATCCCAACTTGGAGCATCTCCTCTTCTTCAAGATCTACCACCAAGTGTCATACTTCACCATCTATACTCCCGAGGTCCCGATGAATTGCAATCGCCTCTACAAAGGAACAAACTAACACCTCTGCAATACTCCTTGTGGCTAGATTCTCAAGGAGAGGACCAGGTTTGGAAGGGTATTAAGGCAACACTAGATGACTATGCTACACATGTAAGGGCCAGAGGAGACAAAGAGTTTAGCCCTGTGTATCCTCTAATGCTTCGACTGGGGTCATTGTTGACAGAAAACGCTCCTGTGACCCAAAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COG5

Protein Analysis

823

Amino Acids

90.0

Weight (kDa)

6.74

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG5_N PF10392 45 - 168 3.4e-25 Conserved oligomeric Golgi complex subunit 5, N-terminal
COG5_C PF20649 199 - 404 2e-50 Conserved oligomeric Golgi complex subunit 5, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67930
fragaria_vesca FvH4_6g38530
malus_domestica MD09G1149900.v1.1 MD17G1137000.v1.1
prunus_persica Prupe.3G175300_v2.0.a1 Prupe.3G175300_v2.0.a1
pyrus_communis pycom09g06940 pycom17g13060
rosa_chinensis RchiOBHm_Chr2g0151781
rosa_laevigata RLG00000020581
rosa_multiflora Rmu_co8286875.1_g000001
rosa_roxburghii Rroxscaffold_2G00096160
rosa_rugosa Rorug02G0429000
rosa_samantha Rh2AG489800 Rh2BG502400 Rh2CG476100 Rh2DG513500
rosa_wichuraiana Rw2G040160 Rw2G040270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 721, 1002
Acc36I ACCTGC 2 cut(s) 721, 1002
AccB1I GGYRCC 3 cut(s) 89, 990, 2113
AccBSI CCGCTC 1 cut(s) 408
AccII CGCG 4 cut(s) 480, 507, 660, 1465
AccIII TCCGGA 1 cut(s) 1881
AclWI GGATC 6 cut(s) 116, 336, 378, 966, 1016, 1029
AcoI YGGCCR 2 cut(s) 3, 2080
AcsI RAATTY 6 cut(s) 1221, 1302, 1312, 1626, 1782, 2086
AcuI CTGAAG 1 cut(s) 776
AcvI CACGTG 1 cut(s) 1229
AcyI GRCGYC 2 cut(s) 90, 893
AdeI CACNNNGTG 1 cut(s) 2207
AfaI GTAC 2 cut(s) 590, 788
AflIII ACRYGT 2 cut(s) 950, 2368
AgsI TTSAA 8 cut(s) 55, 703, 1217, 1301, 1445, 1766, 1914, 2192
AjiI CACGTC 1 cut(s) 951
AjnI CCWGG 3 cut(s) 868, 1620, 2322
AjuI GAANNNNNNNTTGG 6 cut(s) 1304, 1336, 1782, 1814, 2061, 2093
AleI CACNNNNGTG 1 cut(s) 1238
Alw21I GWGCWC 4 cut(s) 393, 462, 627, 2128
Alw26I GTCTC 3 cut(s) 635, 1931, 2379
AlwI GGATC 6 cut(s) 116, 336, 378, 966, 1016, 1029
Ama87I CYCGRG 3 cut(s) 242, 524, 2232
Aor13HI TCCGGA 1 cut(s) 1881
ApeKI GCWGC 5 cut(s) 556, 1042, 1292, 1820, 1970
ApoI RAATTY 6 cut(s) 1221, 1302, 1312, 1626, 1782, 2086
Asp700I GAANNNNTTC 2 cut(s) 1316, 1449
AspLEI GCGC 6 cut(s) 92, 482, 577, 660, 1465, 1467
AspS9I GGNCC 9 cut(s) 258, 265, 866, 1099, 1547, 1571, 2237, 2320, 2376
AsuC2I CCSGG 2 cut(s) 844, 1691
AsuHPI GGTGA 4 cut(s) 406, 1162, 1833, 2210
AvaI CYCGRG 3 cut(s) 242, 524, 2232
AvaII GGWCC 6 cut(s) 258, 265, 1547, 1571, 2237, 2320
BaeGI GKGCMC 1 cut(s) 2116
BalI TGGCCA 2 cut(s) 5, 2082
BamHI GGATCC 1 cut(s) 1021
BanI GGYRCC 3 cut(s) 89, 990, 2113
BanII GRGCYC 5 cut(s) 393, 462, 627, 1074, 2128
BbrPI CACGTG 1 cut(s) 1229
Bbv12I GWGCWC 4 cut(s) 393, 462, 627, 2128
BbvI GCAGC 5 cut(s) 543, 1029, 1304, 1807, 1957
BccI CCATC 7 cut(s) 239, 419, 685, 920, 980, 2038, 2229
BceAI ACGGC 2 cut(s) 745, 1365
BcgI CGANNNNNNTGC 4 cut(s) 592, 626, 709, 743
BciT130I CCWGG 3 cut(s) 870, 1622, 2324
BciVI GTATCC 2 cut(s) 1191, 2418
BcnI CCSGG 2 cut(s) 844, 1691
BcoDI GTCTC 3 cut(s) 635, 1931, 2379
BfaI CTAG 6 cut(s) 686, 1808, 1899, 2049, 2303, 2351
BfmI CTRYAG 1 cut(s) 995
BfoI RGCGCY 2 cut(s) 93, 578
BfuAI ACCTGC 2 cut(s) 721, 1002
BfuI GTATCC 2 cut(s) 1191, 2418
BglI GCCNNNNNGGC 1 cut(s) 674
BglII AGATCT 3 cut(s) 567, 1348, 2194
BlpI GCTNAGC 1 cut(s) 2061
Bme1390I CCNGG 5 cut(s) 844, 870, 1622, 1691, 2324
Bme18I GGWCC 6 cut(s) 258, 265, 1547, 1571, 2237, 2320
BmeT110I CYCGRG 3 cut(s) 242, 524, 2232
BmgBI CACGTC 1 cut(s) 951
BmgT120I GGNCC 9 cut(s) 258, 265, 866, 1099, 1547, 1571, 2237, 2320, 2376
BmiI GGNNCC 8 cut(s) 91, 196, 913, 992, 1023, 1071, 2115, 2239
BmrFI CCNGG 5 cut(s) 844, 870, 1622, 1691, 2324
BmrI ACTGGG 2 cut(s) 2090, 2435
BmsI GCATC 9 cut(s) 35, 612, 1154, 1450, 1624, 1782, 1807, 1847, 2186
BmuI ACTGGG 2 cut(s) 2090, 2435
BoxI GACNNNNGTC 1 cut(s) 2428
BplI GAGNNNNNCTC 2 cut(s) 254, 286
BpmI CTGGAG 7 cut(s) 206, 293, 344, 413, 891, 1566, 1604
Bpu10I CCTNAGC 1 cut(s) 2039
Bpu1102I GCTNAGC 1 cut(s) 2061
BpuEI CTTGAG 3 cut(s) 1396, 1577, 2295
BpuMI CCSGG 2 cut(s) 844, 1691
Bsa29I ATCGAT 1 cut(s) 534
BsaAI YACGTR 1 cut(s) 1229
BsaHI GRCGYC 2 cut(s) 90, 893
BsaI GGTCTC 2 cut(s) 635, 1931
BsaJI CCNNGG 7 cut(s) 261, 543, 915, 1173, 1381, 1689, 2233
BsaWI WCCGGW 2 cut(s) 255, 1881
Bse118I RCCGGY 2 cut(s) 86, 644
Bse1I ACTGG 7 cut(s) 6, 361, 828, 1290, 1549, 2096, 2430
Bse3DI GCAATG 2 cut(s) 559, 1419
BseAI TCCGGA 1 cut(s) 1881
BseBI CCWGG 3 cut(s) 870, 1622, 2324
BseCI ATCGAT 1 cut(s) 534
BseDI CCNNGG 7 cut(s) 261, 543, 915, 1173, 1381, 1689, 2233
BseGI GGATG 7 cut(s) 231, 696, 931, 1465, 1822, 2049, 2162
BseMI GCAATG 2 cut(s) 559, 1419
BseMII CTCAG 3 cut(s) 1689, 1740, 2052
BseNI ACTGG 7 cut(s) 6, 361, 828, 1290, 1549, 2096, 2430
BsePI GCGCGC 1 cut(s) 1463
BseSI GKGCMC 1 cut(s) 2116
BseXI GCAGC 5 cut(s) 543, 1029, 1304, 1807, 1957
BseYI CCCAGC 4 cut(s) 249, 294, 552, 630
BsgI GTGCAG 1 cut(s) 1956
Bsh1236I CGCG 4 cut(s) 480, 507, 660, 1465
Bsh1285I CGRYCG 1 cut(s) 723
BshNI GGYRCC 3 cut(s) 89, 990, 2113
BshVI ATCGAT 1 cut(s) 534
BsiEI CGRYCG 1 cut(s) 723
BsiHKAI GWGCWC 4 cut(s) 393, 462, 627, 2128
BsiHKCI CYCGRG 3 cut(s) 242, 524, 2232
BsiSI CCGG 8 cut(s) 87, 192, 256, 600, 645, 843, 1691, 1882
BslFI GGGAC 6 cut(s) 232, 904, 961, 1672, 2066, 2223
BsmAI GTCTC 3 cut(s) 635, 1931, 2379
BsmFI GGGAC 6 cut(s) 232, 904, 961, 1672, 2066, 2223
BsmI GAATGC 2 cut(s) 967, 1869
Bso31I GGTCTC 2 cut(s) 635, 1931
BsoBI CYCGRG 3 cut(s) 242, 524, 2232
Bsp1286I GDGCHC 6 cut(s) 393, 462, 627, 1074, 2116, 2128
Bsp13I TCCGGA 1 cut(s) 1881
Bsp1720I GCTNAGC 1 cut(s) 2061
Bsp19I CCATGG 1 cut(s) 1173
BspCNI CTCAG 3 cut(s) 1688, 1739, 2053
BspDI ATCGAT 1 cut(s) 534
BspEI TCCGGA 1 cut(s) 1881
BspFNI CGCG 4 cut(s) 480, 507, 660, 1465
BspHI TCATGA 1 cut(s) 1786
BspLI GGNNCC 8 cut(s) 91, 196, 913, 992, 1023, 1071, 2115, 2239
BspMAI CTGCAG 1 cut(s) 999
BspMI ACCTGC 2 cut(s) 721, 1002
BspPI GGATC 6 cut(s) 116, 336, 378, 966, 1016, 1029
BspQI GCTCTTC 1 cut(s) 2133
BspT107I GGYRCC 3 cut(s) 89, 990, 2113
BspTNI GGTCTC 2 cut(s) 635, 1931
BsrBI CCGCTC 1 cut(s) 408
BsrDI GCAATG 2 cut(s) 559, 1419
BsrFI RCCGGY 2 cut(s) 86, 644
BsrI ACTGG 7 cut(s) 6, 361, 828, 1290, 1549, 2096, 2430
BssAI RCCGGY 2 cut(s) 86, 644
BssECI CCNNGG 7 cut(s) 261, 543, 915, 1173, 1381, 1689, 2233
BssHII GCGCGC 1 cut(s) 1463
BssNI GRCGYC 2 cut(s) 90, 893
BssT1I CCWWGG 3 cut(s) 543, 915, 1173
Bst2UI CCWGG 3 cut(s) 870, 1622, 2324
Bst4CI ACNGT 2 cut(s) 337, 1363
Bst6I CTCTTC 4 cut(s) 800, 1479, 2133, 2190
BstACI GRCGYC 2 cut(s) 90, 893
BstAPI GCANNNNNTGC 2 cut(s) 1039, 1700
BstBAI YACGTR 1 cut(s) 1229
BstC8I GCNNGC 4 cut(s) 88, 315, 1465, 2001
BstDEI CTNAG 5 cut(s) 1334, 1675, 1726, 2039, 2061
BstDSI CCRYGG 2 cut(s) 1173, 1381
BstENI CCTNNNNNAGG 2 cut(s) 998, 1106
BstF5I GGATG 7 cut(s) 231, 696, 931, 1465, 1822, 2049, 2162
BstFNI CGCG 4 cut(s) 480, 507, 660, 1465
BstH2I RGCGCY 2 cut(s) 93, 578
BstHHI GCGC 6 cut(s) 92, 482, 577, 660, 1465, 1467
BstMAI GTCTC 3 cut(s) 635, 1931, 2379
BstMCI CGRYCG 1 cut(s) 723
BstNI CCWGG 3 cut(s) 870, 1622, 2324
BstNSI RCATGY 2 cut(s) 1037, 2372
BstPAI GACNNNNGTC 1 cut(s) 2428
BstSCI CCNGG 5 cut(s) 842, 868, 1620, 1689, 2322
BstSFI CTRYAG 1 cut(s) 995
BstSLI GKGCMC 1 cut(s) 2116
BstUI CGCG 4 cut(s) 480, 507, 660, 1465
BstV1I GCAGC 5 cut(s) 543, 1029, 1304, 1807, 1957
BstX2I RGATCY 4 cut(s) 567, 1021, 1348, 2194
BstXI CCANNNNNNTGG 1 cut(s) 1568
BstYI RGATCY 4 cut(s) 567, 1021, 1348, 2194
Bsu15I ATCGAT 1 cut(s) 534
BsuI GTATCC 2 cut(s) 1191, 2418
BsuTUI ATCGAT 1 cut(s) 534
BtgI CCRYGG 2 cut(s) 1173, 1381
BtrI CACGTC 1 cut(s) 951
BtsCI GGATG 7 cut(s) 231, 696, 931, 1465, 1822, 2049, 2162
BtsIMutI CAGTG 3 cut(s) 820, 821, 1734
BveI ACCTGC 2 cut(s) 721, 1002
Cac8I GCNNGC 4 cut(s) 88, 315, 1465, 2001
CciI TCATGA 1 cut(s) 1786
CfoI GCGC 6 cut(s) 92, 482, 577, 660, 1465, 1467
Cfr10I RCCGGY 2 cut(s) 86, 644
Cfr13I GGNCC 9 cut(s) 258, 265, 866, 1099, 1547, 1571, 2237, 2320, 2376
ClaI ATCGAT 1 cut(s) 534
CpoI CGGWCCG 1 cut(s) 258
CseI GACGC 1 cut(s) 901
CsiI ACCWGGT 1 cut(s) 2322
Csp6I GTAC 2 cut(s) 589, 787
CspI CGGWCCG 1 cut(s) 258
CviQI GTAC 2 cut(s) 589, 787
DdeI CTNAG 5 cut(s) 1334, 1675, 1726, 2039, 2061
DinI GGCGCC 1 cut(s) 91
DraIII CACNNNGTG 1 cut(s) 2207
EaeI YGGCCR 2 cut(s) 3, 2080
Eam1104I CTCTTC 4 cut(s) 800, 1479, 2133, 2190
EarI CTCTTC 4 cut(s) 800, 1479, 2133, 2190
EciI GGCGGA 5 cut(s) 166, 224, 362, 476, 924
Ecl136II GAGCTC 4 cut(s) 391, 460, 625, 2126
Eco130I CCWWGG 3 cut(s) 543, 915, 1173
Eco24I GRGCYC 5 cut(s) 393, 462, 627, 1074, 2128
Eco31I GGTCTC 2 cut(s) 635, 1931
Eco32I GATATC 1 cut(s) 1539
Eco47I GGWCC 6 cut(s) 258, 265, 1547, 1571, 2237, 2320
Eco53kI GAGCTC 4 cut(s) 391, 460, 625, 2126
Eco57I CTGAAG 1 cut(s) 776
Eco72I CACGTG 1 cut(s) 1229
Eco88I CYCGRG 3 cut(s) 242, 524, 2232
EcoICRI GAGCTC 4 cut(s) 391, 460, 625, 2126
EcoNI CCTNNNNNAGG 2 cut(s) 998, 1106
EcoO109I RGGNCCY 3 cut(s) 265, 1099, 2237
EcoRI GAATTC 1 cut(s) 1312
EcoRII CCWGG 3 cut(s) 868, 1620, 2322
EcoRV GATATC 1 cut(s) 1539
EcoT14I CCWWGG 3 cut(s) 543, 915, 1173
EcoT22I ATGCAT 1 cut(s) 1840
EcoT38I GRGCYC 5 cut(s) 393, 462, 627, 1074, 2128
EgeI GGCGCC 1 cut(s) 91
EheI GGCGCC 1 cut(s) 91
ErhI CCWWGG 3 cut(s) 543, 915, 1173
FalI AAGNNNNNCTT 2 cut(s) 1737, 1769
FaqI GGGAC 6 cut(s) 232, 904, 961, 1672, 2066, 2223
FauI CCCGC 5 cut(s) 79, 88, 208, 281, 851
FauNDI CATATG 1 cut(s) 1943
FokI GGATG 7 cut(s) 218, 703, 938, 1472, 1829, 2056, 2149
FriOI GRGCYC 5 cut(s) 393, 462, 627, 1074, 2128
FspBI CTAG 6 cut(s) 686, 1808, 1899, 2049, 2303, 2351
GlaI GCGC 6 cut(s) 91, 481, 576, 659, 1464, 1466
GsaI CCCAGC 4 cut(s) 253, 298, 556, 634
GsuI CTGGAG 7 cut(s) 206, 293, 344, 413, 891, 1566, 1604
HaeII RGCGCY 2 cut(s) 93, 578
HapII CCGG 8 cut(s) 87, 192, 256, 600, 645, 843, 1691, 1882
HgaI GACGC 1 cut(s) 901
HhaI GCGC 6 cut(s) 92, 482, 577, 660, 1465, 1467
Hin1I GRCGYC 2 cut(s) 90, 893
Hin6I GCGC 6 cut(s) 90, 480, 575, 658, 1463, 1465
HinP1I GCGC 6 cut(s) 90, 480, 575, 658, 1463, 1465
HincII GTYRAC 1 cut(s) 2439
HindII GTYRAC 1 cut(s) 2439
HindIII AAGCTT 1 cut(s) 1187
HpaII CCGG 8 cut(s) 87, 192, 256, 600, 645, 843, 1691, 1882
HphI GGTGA 4 cut(s) 406, 1162, 1833, 2210
Hpy166II GTNNAC 4 cut(s) 352, 1029, 1658, 2439
Hpy8I GTNNAC 4 cut(s) 352, 1029, 1658, 2439
Hpy99I CGWCG 2 cut(s) 587, 617
HpyCH4III ACNGT 2 cut(s) 337, 1363
HpyCH4IV ACGT 2 cut(s) 950, 1228
HpyF3I CTNAG 5 cut(s) 1334, 1675, 1726, 2039, 2061
HpySE526I ACGT 2 cut(s) 950, 1228
Hsp92I GRCGYC 2 cut(s) 90, 893
HspAI GCGC 6 cut(s) 90, 480, 575, 658, 1463, 1465
KasI GGCGCC 1 cut(s) 89
Kpn2I TCCGGA 1 cut(s) 1881
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
LguI GCTCTTC 1 cut(s) 2133
Lsp1109I GCAGC 5 cut(s) 543, 1029, 1304, 1807, 1957
LweI GCATC 9 cut(s) 35, 612, 1154, 1450, 1624, 1782, 1807, 1847, 2186
MabI ACCWGGT 1 cut(s) 2322
MaeI CTAG 6 cut(s) 686, 1808, 1899, 2049, 2303, 2351
MaeII ACGT 2 cut(s) 950, 1228
MaeIII GTNAC 4 cut(s) 1229, 1721, 1729, 2455
MbiI CCGCTC 1 cut(s) 408
MboII GAAGA 9 cut(s) 541, 817, 1448, 1466, 1496, 1865, 2120, 2177, 2180
MfeI CAATTG 1 cut(s) 773
MflI RGATCY 4 cut(s) 567, 1021, 1348, 2194
MhlI GDGCHC 6 cut(s) 393, 462, 627, 1074, 2116, 2128
MlsI TGGCCA 2 cut(s) 5, 2082
MluNI TGGCCA 2 cut(s) 5, 2082
Mly113I GGCGCC 1 cut(s) 90
MlyI GAGTC 3 cut(s) 254, 1465, 1718
MmeI TCCRAC 6 cut(s) 61, 306, 420, 462, 660, 1437
Mox20I TGGCCA 2 cut(s) 5, 2082
Mph1103I ATGCAT 1 cut(s) 1840
MreI CGCCGGCG 1 cut(s) 86
MroI TCCGGA 1 cut(s) 1881
MroNI GCCGGC 1 cut(s) 86
MroXI GAANNNNTTC 2 cut(s) 1316, 1449
MscI TGGCCA 2 cut(s) 5, 2082
MseI TTAA 3 cut(s) 1059, 1982, 2340
MslI CAYNNNNRTG 1 cut(s) 1238
Msp20I TGGCCA 2 cut(s) 5, 2082
MspA1I CMGCKG 3 cut(s) 556, 1295, 1925
MspI CCGG 8 cut(s) 87, 192, 256, 600, 645, 843, 1691, 1882
MspR9I CCNGG 5 cut(s) 844, 870, 1622, 1691, 2324
MunI CAATTG 1 cut(s) 773
Mva1269I GAATGC 2 cut(s) 967, 1869
MvaI CCWGG 3 cut(s) 870, 1622, 2324
MvnI CGCG 4 cut(s) 480, 507, 660, 1465
NaeI GCCGGC 1 cut(s) 88
NarI GGCGCC 1 cut(s) 90
NciI CCSGG 2 cut(s) 844, 1691
NcoI CCATGG 1 cut(s) 1173
NdeI CATATG 1 cut(s) 1943
NgoMIV GCCGGC 1 cut(s) 86
NlaIV GGNNCC 8 cut(s) 91, 196, 913, 992, 1023, 1071, 2115, 2239
NmeAIII GCCGAG 3 cut(s) 113, 238, 606
NmuCI GTSAC 4 cut(s) 1229, 1721, 1729, 2455
NsiI ATGCAT 1 cut(s) 1840
NspI RCATGY 2 cut(s) 1037, 2372
OliI CACNNNNGTG 1 cut(s) 1238
PaeR7I CTCGAG 1 cut(s) 242
PagI TCATGA 1 cut(s) 1786
PaqCI CACCTGC 2 cut(s) 721, 1002
PauI GCGCGC 1 cut(s) 1463
PciI ACATGT 1 cut(s) 2368
PciSI GCTCTTC 1 cut(s) 2133
PcsI WCGNNNNNNNCGW 3 cut(s) 453, 588, 612
PctI GAATGC 2 cut(s) 967, 1869
PdiI GCCGGC 1 cut(s) 88
PdmI GAANNNNTTC 2 cut(s) 1316, 1449
PfeI GAWTC 8 cut(s) 703, 1416, 1429, 1445, 1553, 1766, 2027, 2306
PfoI TCCNGGA 1 cut(s) 1620
Ple19I CGATCG 1 cut(s) 723
PleI GAGTC 3 cut(s) 253, 1465, 1718
PluTI GGCGCC 1 cut(s) 93
PmaCI CACGTG 1 cut(s) 1229
PmlI CACGTG 1 cut(s) 1229
PpsI GAGTC 3 cut(s) 253, 1465, 1718
Ppu21I YACGTR 1 cut(s) 1229
PpuMI RGGWCCY 2 cut(s) 265, 2237
PscI ACATGT 1 cut(s) 2368
PshAI GACNNNNGTC 1 cut(s) 2428
Psp124BI GAGCTC 4 cut(s) 393, 462, 627, 2128
Psp5II RGGWCCY 2 cut(s) 265, 2237
Psp6I CCWGG 3 cut(s) 868, 1620, 2322
PspCI CACGTG 1 cut(s) 1229
PspFI CCCAGC 4 cut(s) 249, 294, 552, 630
PspGI CCWGG 3 cut(s) 868, 1620, 2322
PspN4I GGNNCC 8 cut(s) 91, 196, 913, 992, 1023, 1071, 2115, 2239
PspPI GGNCC 9 cut(s) 258, 265, 866, 1099, 1547, 1571, 2237, 2320, 2376
PspPPI RGGWCCY 2 cut(s) 265, 2237
PspXI VCTCGAGB 1 cut(s) 242
PstI CTGCAG 1 cut(s) 999
PsuI RGATCY 4 cut(s) 567, 1021, 1348, 2194
PteI GCGCGC 1 cut(s) 1463
PvuI CGATCG 1 cut(s) 723
PvuII CAGCTG 2 cut(s) 556, 1295
RsaI GTAC 2 cut(s) 590, 788
RsaNI GTAC 2 cut(s) 589, 787
RseI CAYNNNNRTG 1 cut(s) 1238
Rsr2I CGGWCCG 1 cut(s) 258
RsrII CGGWCCG 1 cut(s) 258
SacI GAGCTC 4 cut(s) 393, 462, 627, 2128
SapI GCTCTTC 1 cut(s) 2133
SaqAI TTAA 3 cut(s) 1059, 1982, 2340
Sau96I GGNCC 9 cut(s) 258, 265, 866, 1099, 1547, 1571, 2237, 2320, 2376
SchI GAGTC 3 cut(s) 254, 1465, 1718
ScrFI CCNGG 5 cut(s) 844, 870, 1622, 1691, 2324
SduI GDGCHC 6 cut(s) 393, 462, 627, 1074, 2116, 2128
SexAI ACCWGGT 1 cut(s) 2322
SfaNI GCATC 9 cut(s) 35, 612, 1154, 1450, 1624, 1782, 1807, 1847, 2186
SfcI CTRYAG 1 cut(s) 995
SfoI GGCGCC 1 cut(s) 91
Sfr274I CTCGAG 1 cut(s) 242
SgrAI CRCCGGYG 1 cut(s) 86
SinI GGWCC 6 cut(s) 258, 265, 1547, 1571, 2237, 2320
SlaI CTCGAG 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 1238
SmlI CTYRAG 4 cut(s) 242, 1411, 1592, 2310
SmoI CTYRAG 4 cut(s) 242, 1411, 1592, 2310
SspDI GGCGCC 1 cut(s) 89
SspI AATATT 1 cut(s) 1986
SspMI CTAG 6 cut(s) 686, 1808, 1899, 2049, 2303, 2351
SstI GAGCTC 4 cut(s) 393, 462, 627, 2128
StyD4I CCNGG 5 cut(s) 842, 868, 1620, 1689, 2322
StyI CCWWGG 3 cut(s) 543, 915, 1173
TaaI ACNGT 2 cut(s) 337, 1363
TaiI ACGT 2 cut(s) 953, 1231
TaqI TCGA 7 cut(s) 105, 243, 534, 606, 615, 2131, 2422
TatI WGTACW 1 cut(s) 786
TfiI GAWTC 8 cut(s) 703, 1416, 1429, 1445, 1553, 1766, 2027, 2306
Tru1I TTAA 3 cut(s) 1059, 1982, 2340
Tru9I TTAA 3 cut(s) 1059, 1982, 2340
TscAI CASTG 3 cut(s) 820, 828, 1734
TseFI GTSAC 4 cut(s) 1229, 1721, 1729, 2455
TseI GCWGC 5 cut(s) 556, 1042, 1292, 1820, 1970
Tsp45I GTSAC 4 cut(s) 1229, 1721, 1729, 2455
TspGWI ACGGA 3 cut(s) 337, 1014, 1441
TspRI CASTG 3 cut(s) 820, 828, 1734
VpaK11BI GGWCC 6 cut(s) 258, 265, 1547, 1571, 2237, 2320
XagI CCTNNNNNAGG 2 cut(s) 998, 1106
XapI RAATTY 6 cut(s) 1221, 1302, 1312, 1626, 1782, 2086
XceI RCATGY 2 cut(s) 1037, 2372
XcmI CCANNNNNNNNNTGG 2 cut(s) 676, 1541
XhoI CTCGAG 1 cut(s) 242
XmnI GAANNNNTTC 2 cut(s) 1316, 1449
XspI CTAG 6 cut(s) 686, 1808, 1899, 2049, 2303, 2351
Zsp2I ATGCAT 1 cut(s) 1840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.