Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013285

Physical Location & Seq

Genomic Coordinates Reverse (-)

31673247 .. 31676683

Gene Structure 3437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40100.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGGCAAAGATTATAACATCTCCGTTTGTAGGAATTGCCGCTTTTGTCACCTTCCTGGCCTTCTTCGCCTTTTACTATAACCCACTCTCTAATAAACAGAGATTGTTCACTGTTGAAGAATTGGCTTTGTACAATGGGACTGATCAAAGTTTGCCAATCTTCTTAGGAATCCTCGGATCGGTTTTCGATGTTACCAAAGGGAAGTCTCATTATGGTGAGGGTGGGGGCTATAATCATTTTTCTGGAAGAGATGCCTCGCGAGCATTTGTTTCTGGAAACTTTACAGGAGATGGGCTAACAGACTCGCTAAGTGGTTTATCCAGCCAACAGGTGAAGAGTATTGTTGAATGGAGGGATTTCTACTTTCGAAGTTACACATTTGTTGGCAAGCTAGTAGGTCGGTACTATGATACCAAAGGAAACCCTACGAAGTATTTGAAGGGAGTTGAAGCAAAGGCCGCGAGAGGAGCACAGCTATTGAAGAAACAGGAGATTGAAGAAGCCAAGCAACCCAGTTGCAATTCAAGGTGGAGTCAGGATGAGGGTGGAGAGGTTTGGTGTGACGTAGGCGTCCCACGATTAGTTCAGAGGCCACTAGAAATTGCTTTGACTGGGAAAATGAGCAAGCGATGTGCTTGCTTTAAAGAAGATCAACTGGACCAATCAGGGTTGGAAGTCTACAAAGGATGTGATTTTCTTGCCAAGACCTGCCCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010720 GO:0012505 GO:0016020 GO:0020037 GO:0022008 GO:0030154 GO:0032501 GO:0032502 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065007 GO:0097159 GO:1901363 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

241

Amino Acids

26.57

Weight (kDa)

8.64

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyt-b5	PF00173	38 - 98	1e-07	Cytochrome b5-like Heme/Steroid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14965 AT4G14965
fragaria_vesca	FvH4_6g40100 FvH4_6g40100
malus_domestica	MD09G1135300.v1.1
prunus_persica	Prupe.3G191400_v2.0.a1
pyrus_communis	pycom09g05640
rosa_chinensis	RchiOBHm_Chr2g0154731
rosa_laevigata	RLG00000020798
rosa_multiflora	Rmu_sc0001004.1_g000005 Rmu_sc0001027.1_g000007
rosa_roxburghii	Rroxscaffold_2G00094150
rosa_rugosa	Rorug02G0444800
rosa_samantha	Rh2AG510200 Rh2BG521100 Rh2CG495400 Rh2DG531200
rosa_wichuraiana	Rw2G041960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AasI	GACNNNNNNGTC	1 cut(s)	572
Acc36I	ACCTGC	1 cut(s)	719
AccI	GTMKAC	1 cut(s)	681
AccII	CGCG	2 cut(s)	262, 464
AciI	CCGC	3 cut(s)	5, 42, 462
AclWI	GGATC	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	573
AfaI	GTAC	2 cut(s)	134, 407
AfiI	CCNNNNNNNGG	2 cut(s)	32, 181
AgsI	TTSAA	7 cut(s)	119, 350, 442, 452, 484, 500, 528
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	2 cut(s)	394, 478
AluI	AGCT	2 cut(s)	394, 478
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	3 cut(s)	60, 459, 593
AspS9I	GGNCC	1 cut(s)	661
AsuHPI	GGTGA	3 cut(s)	43, 230, 346
AsuII	TTCGAA	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	661
Bbv12I	GWGCWC	1 cut(s)	475
BccI	CCATC	1 cut(s)	287
BcgI	CGANNNNNNTGC	2 cut(s)	621, 655
BciT130I	CCWGG	1 cut(s)	59
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	3 cut(s)	395, 599, 721
BfuAI	ACCTGC	1 cut(s)	719
BisI	GCNGC	3 cut(s)	6, 42, 462
BlsI	GCNGC	3 cut(s)	7, 43, 463
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	661
BmgT120I	GGNCC	1 cut(s)	661
BmrFI	CCNGG	1 cut(s)	59
BmrI	ACTGGG	3 cut(s)	510, 624, 710
BmsI	GCATC	1 cut(s)	244
BmuI	ACTGGG	3 cut(s)	510, 624, 710
Bpu14I	TTCGAA	1 cut(s)	370
BsaHI	GRCGYC	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 181
Bse1I	ACTGG	4 cut(s)	516, 619, 663, 716
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	2 cut(s)	547, 695
BseLI	CCNNNNNNNGG	2 cut(s)	32, 181
BseNI	ACTGG	4 cut(s)	516, 619, 663, 716
BseRI	GAGGAG	1 cut(s)	483
Bsh1236I	CGCG	2 cut(s)	262, 464
BshFI	GGCC	3 cut(s)	62, 461, 595
BsiHKAI	GWGCWC	1 cut(s)	475
BslFI	GGGAC	2 cut(s)	154, 560
BslI	CCNNNNNNNGG	2 cut(s)	32, 181
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	2 cut(s)	154, 560
BsnI	GGCC	3 cut(s)	62, 461, 595
Bsp119I	TTCGAA	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	145, 179, 652
Bsp68I	TCGCGA	1 cut(s)	262
BspACI	CCGC	3 cut(s)	5, 42, 462
BspANI	GGCC	3 cut(s)	62, 461, 595
BspFNI	CGCG	2 cut(s)	262, 464
BspMI	ACCTGC	1 cut(s)	719
BspPI	GGATC	1 cut(s)	187
BspT104I	TTCGAA	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	4 cut(s)	516, 619, 663, 716
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	3 cut(s)	145, 179, 652
BssNI	GRCGYC	1 cut(s)	573
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	2 cut(s)	244, 332
BstACI	GRCGYC	1 cut(s)	573
BstAUI	TGTACA	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	370
BstC8I	GCNNGC	4 cut(s)	264, 392, 629, 640
BstDEI	CTNAG	2 cut(s)	166, 311
BstF5I	GGATG	2 cut(s)	547, 695
BstFNI	CGCG	2 cut(s)	262, 464
BstKTI	GATC	3 cut(s)	148, 182, 655
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	3 cut(s)	145, 179, 652
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 263, 461, 470
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstUI	CGCG	2 cut(s)	262, 464
BsuRI	GGCC	3 cut(s)	62, 461, 595
BtgZI	GCGATG	1 cut(s)	646
BtsCI	GGATG	2 cut(s)	547, 695
BtsIMutI	CAGTG	1 cut(s)	111
BtuMI	TCGCGA	1 cut(s)	262
BveI	ACCTGC	1 cut(s)	719
Cac8I	GCNNGC	4 cut(s)	264, 392, 629, 640
Cfr13I	GGNCC	1 cut(s)	661
CseI	GACGC	1 cut(s)	562
Csp6I	GTAC	2 cut(s)	133, 406
CviQI	GTAC	2 cut(s)	133, 406
DdeI	CTNAG	2 cut(s)	166, 311
DpnI	GATC	3 cut(s)	147, 181, 654
DpnII	GATC	3 cut(s)	145, 179, 652
DraI	TTTAAA	1 cut(s)	646
DrdI	GACNNNNNNGTC	1 cut(s)	572
DseDI	GACNNNNNNGTC	1 cut(s)	572
Eam1104I	CTCTTC	2 cut(s)	244, 332
EarI	CTCTTC	2 cut(s)	244, 332
Eco47I	GGWCC	1 cut(s)	661
EcoRII	CCWGG	1 cut(s)	57
FaiI	YATR	5 cut(s)	17, 81, 216, 234, 411
FaqI	GGGAC	2 cut(s)	154, 560
FbaI	TGATCA	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	681
Fnu4HI	GCNGC	3 cut(s)	6, 42, 462
FokI	GGATG	2 cut(s)	554, 702
Fsp4HI	GCNGC	3 cut(s)	6, 42, 462
FspBI	CTAG	3 cut(s)	395, 599, 721
GluI	GCNGC	3 cut(s)	6, 42, 462
HaeIII	GGCC	3 cut(s)	62, 461, 595
HgaI	GACGC	1 cut(s)	562
Hin1I	GRCGYC	1 cut(s)	573
HinfI	GANTC	3 cut(s)	171, 305, 535
HphI	GGTGA	3 cut(s)	43, 230, 346
Hpy166II	GTNNAC	2 cut(s)	111, 682
Hpy188I	TCNGA	2 cut(s)	179, 591
Hpy188III	TCNNGA	4 cut(s)	246, 261, 276, 539
Hpy8I	GTNNAC	2 cut(s)	111, 682
HpyAV	CCTTC	3 cut(s)	64, 73, 436
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	1 cut(s)	522
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 263, 461, 470
HpyF3I	CTNAG	2 cut(s)	166, 311
HpySE526I	ACGT	1 cut(s)	567
Hsp92I	GRCGYC	1 cut(s)	573
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	145, 179, 652
LmnI	GCTCC	1 cut(s)	470
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	3 cut(s)	395, 599, 721
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	4 cut(s)	49, 193, 374, 563
MalI	GATC	3 cut(s)	147, 181, 654
MboI	GATC	3 cut(s)	145, 179, 652
MboII	GAAGA	8 cut(s)	58, 131, 154, 261, 349, 496, 512, 662
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	4 cut(s)	36, 122, 523, 603
MlyI	GAGTC	2 cut(s)	299, 544
MmeI	TCCRAC	1 cut(s)	654
MnlI	CCTC	8 cut(s)	185, 214, 268, 348, 461, 538, 547, 585
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	2 cut(s)	262, 464
MwoI	GCNNNNNNNGC	4 cut(s)	68, 263, 461, 470
NdeII	GATC	3 cut(s)	145, 179, 652
NmuCI	GTSAC	2 cut(s)	49, 563
NruI	TCGCGA	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	3 cut(s)	7, 43, 463
PleI	GAGTC	2 cut(s)	299, 543
PpsI	GAGTC	2 cut(s)	299, 543
PsiI	TTATAA	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	661
RruI	TCGCGA	1 cut(s)	262
RsaI	GTAC	2 cut(s)	134, 407
RsaNI	GTAC	2 cut(s)	133, 406
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	3 cut(s)	6, 42, 462
Sau3AI	GATC	3 cut(s)	145, 179, 652
Sau96I	GGNCC	1 cut(s)	661
SchI	GAGTC	2 cut(s)	299, 544
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	475
SetI	ASST	9 cut(s)	56, 336, 396, 403, 480, 533, 558, 570, 713
SfaNI	GCATC	1 cut(s)	244
SfuI	TTCGAA	1 cut(s)	370
SinI	GGWCC	1 cut(s)	661
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	4 cut(s)	36, 122, 523, 603
SsiI	CCGC	3 cut(s)	5, 42, 462
SspMI	CTAG	3 cut(s)	395, 599, 721
StyD4I	CCNGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	2 cut(s)	189, 370
TasI	AATT	4 cut(s)	36, 122, 523, 603
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	3 cut(s)	8, 44, 464
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	2 cut(s)	49, 563
Tsp45I	GTSAC	2 cut(s)	49, 563
TspGWI	ACGGA	1 cut(s)	15
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	661
XmiI	GTMKAC	1 cut(s)	681
XspI	CTAG	3 cut(s)	395, 599, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.