Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001027.1

Orthogroup ID

OG0013285

Physical Location & Seq

Genomic Coordinates Forward (+)

33272 .. 36378

Gene Structure 3107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001027.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggcggcaaagattttaacgtctccttttgtaggaattgccgttttcgtcaccttgctcgctctcttcgccttttactacaagccactctcaaaacagagattgttcactgttgaagaattggctttgtacaatgggactgatcaaagtttgccaatcttcttaggaattctcggatcggttttcgatgtgacgaaaggaaagtctcattacggtgagggtgggggttataatcatttttctggaagttctgaagttgcttttgaatttttagcggacaagcgaaagagttgggtttgtctgttgaagggaattctttttctggtgaagagtattgttgaatggagggatttctactttagaacttacacatttgttggtaagctagtaggtcggtactatgatcccaaaggaaatcctacgaaatatttgaagggagttgaagcaaaggctgccagaggggcacagctattgaagaaacaggagattgaagaagctaagcaacctggttgcaattcaaggtggagtcaggatgagggcggagaggtttggtgtgatgtgggtgtcccacgattagttcagaggccactagaaattgctttgactgggaaaatgagcaagcgatgtgcgtgctttaaagaggatcaactgagccaaccagggttggaagtctacgaaggatgtgaatatcttgccaagacctgccgagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010720 GO:0012505 GO:0016020 GO:0020037 GO:0022008 GO:0030154 GO:0032501 GO:0032502 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065007 GO:0097159 GO:1901363 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

237

Amino Acids

26.61

Weight (kDa)

8.95

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14965 AT4G14965
fragaria_vesca	FvH4_6g40100 FvH4_6g40100
malus_domestica	MD09G1135300.v1.1
prunus_persica	Prupe.3G191400_v2.0.a1
pyrus_communis	pycom09g05640
rosa_chinensis	RchiOBHm_Chr2g0154731
rosa_laevigata	RLG00000020798
rosa_multiflora	Rmu_sc0001004.1_g000005 Rmu_sc0001027.1_g000007
rosa_roxburghii	Rroxscaffold_2G00094150
rosa_rugosa	Rorug02G0444800
rosa_samantha	Rh2AG510200 Rh2BG521100 Rh2CG495400 Rh2DG531200
rosa_wichuraiana	Rw2G041960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
Acc36I	ACCTGC	1 cut(s)	710
AccI	GTMKAC	1 cut(s)	672
AciI	CCGC	3 cut(s)	5, 275, 540
AclWI	GGATC	3 cut(s)	184, 398, 651
AcsI	RAATTY	3 cut(s)	168, 266, 312
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	131, 398
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	9 cut(s)	116, 266, 307, 341, 433, 443, 475, 491, 519
AjnI	CCWGG	2 cut(s)	505, 658
AluBI	AGCT	3 cut(s)	385, 469, 497
AluI	AGCT	3 cut(s)	385, 469, 497
Alw26I	GTCTC	2 cut(s)	27, 210
AlwI	GGATC	3 cut(s)	184, 398, 651
AoxI	GGCC	1 cut(s)	584
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	3 cut(s)	168, 266, 312
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AsuHPI	GGTGA	3 cut(s)	43, 227, 337
BaeGI	GKGCMC	1 cut(s)	466
BbvI	GCAGC	1 cut(s)	439
BceAI	ACGGC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	612, 646
BciT130I	CCWGG	2 cut(s)	507, 660
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	27, 210
BfaI	CTAG	2 cut(s)	386, 590
BfuAI	ACCTGC	1 cut(s)	710
BglI	GCCNNNNNGGC	1 cut(s)	461
BisI	GCNGC	2 cut(s)	6, 453
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	2 cut(s)	7, 454
Bme1390I	CCNGG	2 cut(s)	507, 660
BmrFI	CCNGG	2 cut(s)	507, 660
BmrI	ACTGGG	1 cut(s)	615
BmuI	ACTGGG	1 cut(s)	615
Bpu1102I	GCTNAGC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	659
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	610
BseBI	CCWGG	2 cut(s)	507, 660
BseDI	CCNNGG	1 cut(s)	659
BseGI	GGATG	2 cut(s)	538, 686
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	1 cut(s)	610
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	1 cut(s)	439
BshFI	GGCC	1 cut(s)	586
BslFI	GGGAC	2 cut(s)	151, 551
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	2 cut(s)	27, 210
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	2 cut(s)	151, 551
BsnI	GGCC	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	142, 176, 403, 643
Bsp1720I	GCTNAGC	1 cut(s)	498
BspACI	CCGC	3 cut(s)	5, 275, 540
BspANI	GGCC	1 cut(s)	586
BspCNI	CTCAG	1 cut(s)	642
BspMI	ACCTGC	1 cut(s)	710
BspPI	GGATC	3 cut(s)	184, 398, 651
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	610
BssECI	CCNNGG	1 cut(s)	659
BssMI	GATC	4 cut(s)	142, 176, 403, 643
Bst2UI	CCWGG	2 cut(s)	507, 660
Bst4CI	ACNGT	2 cut(s)	112, 215
Bst6I	CTCTTC	2 cut(s)	71, 323
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	60, 620, 631
BstDEI	CTNAG	3 cut(s)	163, 498, 650
BstENI	CCTNNNNNAGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	538, 686
BstKTI	GATC	4 cut(s)	145, 179, 406, 646
BstMAI	GTCTC	2 cut(s)	27, 210
BstMBI	GATC	4 cut(s)	142, 176, 403, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 452, 461
BstNI	CCWGG	2 cut(s)	507, 660
BstSCI	CCNGG	2 cut(s)	505, 658
BstSLI	GKGCMC	1 cut(s)	466
BstV1I	GCAGC	1 cut(s)	439
BsuRI	GGCC	1 cut(s)	586
BtgZI	GCGATG	1 cut(s)	637
BtsCI	GGATG	2 cut(s)	538, 686
BtsIMutI	CAGTG	1 cut(s)	108
BveI	ACCTGC	1 cut(s)	710
Cac8I	GCNNGC	3 cut(s)	60, 620, 631
CsiI	ACCWGGT	1 cut(s)	505
Csp6I	GTAC	2 cut(s)	130, 397
CviJI	RGCY	8 cut(s)	85, 125, 385, 452, 469, 497, 586, 654
CviKI_1	RGCY	8 cut(s)	85, 125, 385, 452, 469, 497, 586, 654
CviQI	GTAC	2 cut(s)	130, 397
DdeI	CTNAG	3 cut(s)	163, 498, 650
DpnI	GATC	4 cut(s)	144, 178, 405, 645
DpnII	GATC	4 cut(s)	142, 176, 403, 643
DraI	TTTAAA	1 cut(s)	637
Eam1104I	CTCTTC	2 cut(s)	71, 323
EarI	CTCTTC	2 cut(s)	71, 323
EciI	GGCGGA	1 cut(s)	555
Eco57I	CTGAAG	1 cut(s)	273
EcoNI	CCTNNNNNAGG	1 cut(s)	30
EcoRI	GAATTC	2 cut(s)	168, 312
EcoRII	CCWGG	2 cut(s)	505, 658
Esp3I	CGTCTC	1 cut(s)	27
FaiI	YATR	2 cut(s)	231, 402
FaqI	GGGAC	2 cut(s)	151, 551
FbaI	TGATCA	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	2 cut(s)	6, 453
FokI	GGATG	2 cut(s)	545, 693
Fsp4HI	GCNGC	2 cut(s)	6, 453
FspBI	CTAG	2 cut(s)	386, 590
GluI	GCNGC	2 cut(s)	6, 453
HaeIII	GGCC	1 cut(s)	586
HinfI	GANTC	1 cut(s)	526
HphI	GGTGA	3 cut(s)	43, 227, 337
Hpy166II	GTNNAC	2 cut(s)	108, 673
Hpy188I	TCNGA	3 cut(s)	176, 253, 582
Hpy188III	TCNNGA	2 cut(s)	243, 530
Hpy8I	GTNNAC	2 cut(s)	108, 673
HpyAV	CCTTC	3 cut(s)	301, 427, 671
HpyCH4III	ACNGT	2 cut(s)	112, 215
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	1 cut(s)	513
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 452, 461
HpyF3I	CTNAG	3 cut(s)	163, 498, 650
HpySE526I	ACGT	1 cut(s)	20
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	142, 176, 403, 643
Lsp1109I	GCAGC	1 cut(s)	439
MabI	ACCWGGT	1 cut(s)	505
MaeI	CTAG	2 cut(s)	386, 590
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	2 cut(s)	49, 190
MalI	GATC	4 cut(s)	144, 178, 405, 645
MboI	GATC	4 cut(s)	142, 176, 403, 643
MboII	GAAGA	6 cut(s)	58, 128, 151, 340, 487, 503
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	7 cut(s)	36, 119, 168, 266, 312, 514, 594
MlyI	GAGTC	1 cut(s)	535
MmeI	TCCRAC	1 cut(s)	645
MnlI	CCTC	7 cut(s)	211, 339, 452, 529, 538, 576, 634
MseI	TTAA	3 cut(s)	17, 636, 712
MslI	CAYNNNNRTG	1 cut(s)	213
MspR9I	CCNGG	2 cut(s)	507, 660
MvaI	CCWGG	2 cut(s)	507, 660
MwoI	GCNNNNNNNGC	3 cut(s)	68, 452, 461
NdeII	GATC	4 cut(s)	142, 176, 403, 643
NmuCI	GTSAC	2 cut(s)	49, 190
PkrI	GCNGC	2 cut(s)	7, 454
PleI	GAGTC	1 cut(s)	534
PpsI	GAGTC	1 cut(s)	534
PsiI	TTATAA	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	505, 658
PspGI	CCWGG	2 cut(s)	505, 658
RsaI	GTAC	2 cut(s)	131, 398
RsaNI	GTAC	2 cut(s)	130, 397
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	3 cut(s)	17, 636, 712
SatI	GCNGC	2 cut(s)	6, 453
Sau3AI	GATC	4 cut(s)	142, 176, 403, 643
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	2 cut(s)	507, 660
SduI	GDGCHC	1 cut(s)	466
SexAI	ACCWGGT	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	7 cut(s)	36, 119, 168, 266, 312, 514, 594
SsiI	CCGC	3 cut(s)	5, 275, 540
SspI	AATATT	1 cut(s)	428
SspMI	CTAG	2 cut(s)	386, 590
StyD4I	CCNGG	2 cut(s)	505, 658
TaaI	ACNGT	2 cut(s)	112, 215
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	1 cut(s)	186
TasI	AATT	7 cut(s)	36, 119, 168, 266, 312, 514, 594
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	3 cut(s)	17, 636, 712
Tru9I	TTAA	3 cut(s)	17, 636, 712
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	2 cut(s)	49, 190
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	2 cut(s)	49, 190
TspRI	CASTG	1 cut(s)	115
XagI	CCTNNNNNAGG	1 cut(s)	30
XapI	RAATTY	3 cut(s)	168, 266, 312
XmiI	GTMKAC	1 cut(s)	672
XspI	CTAG	2 cut(s)	386, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.