Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013285

Physical Location & Seq

Genomic Coordinates Reverse (-)

20397881 .. 20401649

Gene Structure 3769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G191400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGGCAAAGCTCATAGCAACGTCTCCTTTTGTAGGAATTGCAGTTTTTGTCTCGCTCATCGCTCTCGTCGCGTTTTATTATAAGCCTTTCTCACAACAGAGGTTGTTCACTGTTGAAGAATTGGCCTTGTACAACGGGACTGATCAAAGCTTACCCATTTTATTAGGAATTCTCGGATCGGTTTTCGACGTGACAAAAGGAAAATCTCATTATGGTGAGGGTGGGGGTTACAATCATTTTTCAGGAAGAGATGCTTCACGAGCATTTGTTTCAGGAAACTTTACAGGAGATGGGCTCACAGACTCGCTACGTGATTTATCCAGTACACAGGTGAAGAGTGTTGTTGAATGGAGGGATTTCTACTTTAGAAGTTACACATTTGTAGGTAAGCTAGTAGGTCGTTACTATGATTCTGAAGGAAATCCTACAAAATATTTAAAGGGAGTGGAAGCAAAGGCTGCTAGAGGTGCTCAGCTTTTGGAGAAACAGAAGAATGAAGAAGCGAAGCAACCTAGTTGCAATTCGAGGTGGAGTCAGGACGAGGGTGGAGAGGTTTGGTGTGATGAGGGCGTCCCAAGGTTAGTTCAGAGACCACTAGAAATTGCTTTAACTGGGAAGATGAGCAAGCGATGTGCATGCTTTAAAGAAGATCAACTGGACCAGTCAGGGTTGGAAGTCTACGAAGGATGTGATTTCCTTGCAAAGACTTGCCGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010720 GO:0012505 GO:0016020 GO:0020037 GO:0022008 GO:0030154 GO:0032501 GO:0032502 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065007 GO:0097159 GO:1901363 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

241

Amino Acids

26.6

Weight (kDa)

6.74

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14965 AT4G14965
fragaria_vesca	FvH4_6g40100 FvH4_6g40100
malus_domestica	MD09G1135300.v1.1
prunus_persica	Prupe.3G191400_v2.0.a1
pyrus_communis	pycom09g05640
rosa_chinensis	RchiOBHm_Chr2g0154731
rosa_laevigata	RLG00000020798
rosa_multiflora	Rmu_sc0001004.1_g000005 Rmu_sc0001027.1_g000007
rosa_roxburghii	Rroxscaffold_2G00094150
rosa_rugosa	Rorug02G0444800
rosa_samantha	Rh2AG510200 Rh2BG521100 Rh2CG495400 Rh2DG531200
rosa_wichuraiana	Rw2G041960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	681
AccII	CGCG	1 cut(s)	74
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	573
AfaI	GTAC	2 cut(s)	134, 328
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	119, 350
AjiI	CACGTC	1 cut(s)	193
AluBI	AGCT	4 cut(s)	13, 153, 394, 478
AluI	AGCT	4 cut(s)	13, 153, 394, 478
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	3 cut(s)	30, 58, 586
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	661
AsuHPI	GGTGA	2 cut(s)	230, 346
AvaII	GGWCC	1 cut(s)	661
BanII	GRGCYC	1 cut(s)	300
BauI	CACGAG	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	1 cut(s)	287
BcgI	CGANNNNNNTGC	2 cut(s)	621, 655
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	3 cut(s)	30, 58, 586
BfaI	CTAG	4 cut(s)	395, 465, 516, 599
BisI	GCNGC	2 cut(s)	6, 462
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	2 cut(s)	7, 463
Bme18I	GGWCC	1 cut(s)	661
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	661
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	1 cut(s)	244
BmuI	ACTGGG	1 cut(s)	624
BplI	GAGNNNNNCTC	2 cut(s)	282, 314
Bpu1102I	GCTNAGC	1 cut(s)	474
BsaAI	YACGTR	1 cut(s)	314
BsaHI	GRCGYC	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	586
BsaJI	CCNNGG	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	4 cut(s)	324, 619, 663, 664
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	1 cut(s)	695
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	4 cut(s)	324, 619, 663, 664
BseXI	GCAGC	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	475
BslFI	GGGAC	2 cut(s)	154, 560
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	3 cut(s)	30, 58, 586
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	2 cut(s)	154, 560
BsnI	GGCC	1 cut(s)	128
Bso31I	GGTCTC	1 cut(s)	586
Bsp1286I	GDGCHC	2 cut(s)	300, 475
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	145, 179, 652
Bsp1720I	GCTNAGC	1 cut(s)	474
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	74
BspPI	GGATC	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	586
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	4 cut(s)	324, 619, 663, 664
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	3 cut(s)	145, 179, 652
BssNI	GRCGYC	1 cut(s)	573
BssSI	CACGAG	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	578
Bst2BI	CACGAG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	2 cut(s)	244, 332
BstACI	GRCGYC	1 cut(s)	573
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	629, 640
BstDEI	CTNAG	1 cut(s)	474
BstENI	CCTNNNNNAGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	695
BstFNI	CGCG	1 cut(s)	74
BstKTI	GATC	3 cut(s)	148, 182, 655
BstMAI	GTCTC	3 cut(s)	30, 58, 586
BstMBI	GATC	3 cut(s)	145, 179, 652
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 263, 461, 470
BstNSI	RCATGY	1 cut(s)	642
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	128
BtgZI	GCGATG	2 cut(s)	46, 646
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	695
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	629, 640
Cfr13I	GGNCC	1 cut(s)	661
CseI	GACGC	1 cut(s)	562
Csp6I	GTAC	2 cut(s)	133, 327
CviAII	CATG	1 cut(s)	639
CviJI	RGCY	8 cut(s)	13, 88, 128, 153, 298, 394, 461, 478
CviKI_1	RGCY	8 cut(s)	13, 88, 128, 153, 298, 394, 461, 478
CviQI	GTAC	2 cut(s)	133, 327
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	3 cut(s)	147, 181, 654
DpnII	GATC	3 cut(s)	145, 179, 652
DraI	TTTAAA	2 cut(s)	441, 646
Eam1104I	CTCTTC	2 cut(s)	244, 332
EarI	CTCTTC	2 cut(s)	244, 332
Eco130I	CCWWGG	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	438
EcoNI	CCTNNNNNAGG	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	578
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	578
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	1 cut(s)	642
FaiI	YATR	5 cut(s)	17, 84, 216, 411, 640
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	2 cut(s)	154, 560
FatI	CATG	1 cut(s)	638
FbaI	TGATCA	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	681
Fnu4HI	GCNGC	2 cut(s)	6, 462
FokI	GGATG	1 cut(s)	702
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	2 cut(s)	6, 462
FspBI	CTAG	4 cut(s)	395, 465, 516, 599
GluI	GCNGC	2 cut(s)	6, 462
HaeIII	GGCC	1 cut(s)	128
HgaI	GACGC	1 cut(s)	562
Hin1I	GRCGYC	1 cut(s)	573
Hin1II	CATG	1 cut(s)	642
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	3 cut(s)	305, 413, 535
HphI	GGTGA	2 cut(s)	230, 346
Hpy166II	GTNNAC	3 cut(s)	111, 329, 682
Hpy188I	TCNGA	3 cut(s)	179, 418, 591
Hpy188III	TCNNGA	4 cut(s)	246, 261, 276, 539
Hpy8I	GTNNAC	3 cut(s)	111, 329, 682
Hpy99I	CGWCG	2 cut(s)	74, 194
HpyAV	CCTTC	2 cut(s)	413, 680
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	3 cut(s)	23, 192, 313
HpyCH4V	TGCA	4 cut(s)	44, 522, 638, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 263, 461, 470
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	3 cut(s)	23, 192, 313
Hsp92I	GRCGYC	1 cut(s)	573
Hsp92II	CATG	1 cut(s)	642
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	145, 179, 652
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	4 cut(s)	395, 465, 516, 599
MaeII	ACGT	3 cut(s)	23, 192, 313
MaeIII	GTNAC	4 cut(s)	193, 230, 374, 404
MalI	GATC	3 cut(s)	147, 181, 654
MboI	GATC	3 cut(s)	145, 179, 652
MboII	GAAGA	7 cut(s)	131, 261, 349, 505, 512, 631, 662
MhlI	GDGCHC	2 cut(s)	300, 475
MluCI	AATT	5 cut(s)	39, 122, 171, 523, 603
MlyI	GAGTC	2 cut(s)	299, 544
MmeI	TCCRAC	1 cut(s)	654
MnlI	CCTC	8 cut(s)	96, 214, 348, 461, 522, 538, 547, 562
MseI	TTAA	4 cut(s)	440, 611, 645, 721
MslI	CAYNNNNRTG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	4 cut(s)	71, 263, 461, 470
NdeII	GATC	3 cut(s)	145, 179, 652
NlaIII	CATG	1 cut(s)	642
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	1 cut(s)	642
PaeI	GCATGC	1 cut(s)	642
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	7, 463
PleI	GAGTC	2 cut(s)	299, 543
PpsI	GAGTC	2 cut(s)	299, 543
Ppu21I	YACGTR	1 cut(s)	314
PsiI	TTATAA	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	661
RsaI	GTAC	2 cut(s)	134, 328
RsaNI	GTAC	2 cut(s)	133, 327
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	4 cut(s)	440, 611, 645, 721
SatI	GCNGC	2 cut(s)	6, 462
Sau3AI	GATC	3 cut(s)	145, 179, 652
Sau96I	GGNCC	1 cut(s)	661
SchI	GAGTC	2 cut(s)	299, 544
SduI	GDGCHC	2 cut(s)	300, 475
SfaNI	GCATC	1 cut(s)	244
SinI	GGWCC	1 cut(s)	661
SmiMI	CAYNNNNRTG	1 cut(s)	216
SphI	GCATGC	1 cut(s)	642
Sse9I	AATT	5 cut(s)	39, 122, 171, 523, 603
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	437
SspMI	CTAG	4 cut(s)	395, 465, 516, 599
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	3 cut(s)	26, 195, 316
TaqI	TCGA	2 cut(s)	189, 527
TasI	AATT	5 cut(s)	39, 122, 171, 523, 603
TatI	WGTACW	2 cut(s)	132, 326
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	4 cut(s)	440, 611, 645, 721
Tru9I	TTAA	4 cut(s)	440, 611, 645, 721
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	513
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	661
XagI	CCTNNNNNAGG	1 cut(s)	33
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	1 cut(s)	642
XmiI	GTMKAC	1 cut(s)	681
XspI	CTAG	4 cut(s)	395, 465, 516, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.