Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0013285

Physical Location & Seq

Genomic Coordinates Forward (+)

4185335 .. 4188350

Gene Structure 3016 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05640.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGGCAAAGCTGTTAGCAACTTCCCCATTTGTAGGAATTGCGGTACTCGTCTCCCTCGTAGCTCTCTTCGCCTTCTATTACAAGCCCTTCTCCCAACAGAGATTGTTCACTGTTGAAGAACTGGCTTTGTACAATGGGACTGATGCGAGTTTACCGATTTTTCTAGGAATTCTCGGGTCGGTTTTCGATGTGACGAAAGGAAACTCTCATTACGGTGAGGGTGGGGGGTACAATCATTTTTCTGGAAGAGATGCTTCACGAGCATTTGTTTCAGGAAACTTTACAGGAGATGGGCTCACAGACTCGTTACGTGGTTTATCAAGTACACAGGTGAAGAGTGTTGTTGAATGGAGGGATTTCTACTTTAAAAGTTACATATTTGTAGGGAAACTAGTAGGTCGTTACTATGATTCTCAAGGAAATCCTACAAAATATTTGAAGGGAGTGGAAGCAAAGGCTGCGAGAGGTGCTCAGCTTTTAAAGAAACAGGAAAATGAAGAAGCGAAGCAACCTGGTTGCAACTCAAGGTGGAGTCAGGATGAGGGTGGAGAGGTTTGGTGCGATGAGGGTGTCCCGAGGTTAGTTCAGAGACCGCTGCAAATGGCTTTGACTGGGAAAATGAGCACACGATGCGCATGCTTTAATGAAGATCAACTAGACCAACCGGGGTTAAAGATCTACGAAGGATGTGATTATCTTGCCAAGACCTGCCGAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010720 GO:0012505 GO:0016020 GO:0020037 GO:0022008 GO:0030154 GO:0032501 GO:0032502 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065007 GO:0097159 GO:1901363 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

241

Amino Acids

26.47

Weight (kDa)

8.14

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14965 AT4G14965
fragaria_vesca	FvH4_6g40100 FvH4_6g40100
malus_domestica	MD09G1135300.v1.1
prunus_persica	Prupe.3G191400_v2.0.a1
pyrus_communis	pycom09g05640
rosa_chinensis	RchiOBHm_Chr2g0154731
rosa_laevigata	RLG00000020798
rosa_multiflora	Rmu_sc0001004.1_g000005 Rmu_sc0001027.1_g000007
rosa_roxburghii	Rroxscaffold_2G00094150
rosa_rugosa	Rorug02G0444800
rosa_samantha	Rh2AG510200 Rh2BG521100 Rh2CG495400 Rh2DG531200
rosa_wichuraiana	Rw2G041960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	637
Acc36I	ACCTGC	1 cut(s)	719
AciI	CCGC	3 cut(s)	5, 44, 596
AcsI	RAATTY	1 cut(s)	171
AfaI	GTAC	4 cut(s)	48, 134, 233, 328
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	119, 350, 442
AhlI	ACTAGT	1 cut(s)	394
AjnI	CCWGG	1 cut(s)	514
AluBI	AGCT	3 cut(s)	13, 65, 478
AluI	AGCT	3 cut(s)	13, 65, 478
Alw21I	GWGCWC	2 cut(s)	475, 629
Alw26I	GTCTC	2 cut(s)	58, 586
Ama87I	CYCGRG	2 cut(s)	176, 577
ApeKI	GCWGC	2 cut(s)	461, 598
ApoI	RAATTY	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	638
AsuC2I	CCSGG	1 cut(s)	669
AsuHPI	GGTGA	2 cut(s)	230, 346
AvaI	CYCGRG	2 cut(s)	176, 577
BanII	GRGCYC	1 cut(s)	300
BauI	CACGAG	1 cut(s)	261
Bbv12I	GWGCWC	2 cut(s)	475, 629
BbvI	GCAGC	2 cut(s)	448, 585
BccI	CCATC	1 cut(s)	287
BcgI	CGANNNNNNTGC	2 cut(s)	621, 655
BciT130I	CCWGG	1 cut(s)	516
BcnI	CCSGG	1 cut(s)	669
BcoDI	GTCTC	2 cut(s)	58, 586
BcuI	ACTAGT	1 cut(s)	394
BfaI	CTAG	3 cut(s)	167, 395, 659
BfuAI	ACCTGC	1 cut(s)	719
BglII	AGATCT	1 cut(s)	678
BisI	GCNGC	3 cut(s)	6, 462, 599
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	3 cut(s)	7, 463, 600
Bme1390I	CCNGG	2 cut(s)	516, 669
BmeT110I	CYCGRG	2 cut(s)	176, 577
BmrFI	CCNGG	2 cut(s)	516, 669
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	3 cut(s)	136, 244, 623
BmuI	ACTGGG	1 cut(s)	624
BplI	GAGNNNNNCTC	4 cut(s)	282, 314, 457, 489
Bpu1102I	GCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	2 cut(s)	402, 511
BpuMI	CCSGG	1 cut(s)	669
BsaAI	YACGTR	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	586
BsaJI	CCNNGG	2 cut(s)	578, 668
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	129, 619
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	2 cut(s)	578, 668
BseGI	GGATG	2 cut(s)	547, 695
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	2 cut(s)	129, 619
BseXI	GCAGC	2 cut(s)	448, 585
BsiHKAI	GWGCWC	2 cut(s)	475, 629
BsiHKCI	CYCGRG	2 cut(s)	176, 577
BsiSI	CCGG	1 cut(s)	668
BslFI	GGGAC	2 cut(s)	154, 560
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	2 cut(s)	58, 586
BsmBI	CGTCTC	1 cut(s)	58
BsmFI	GGGAC	2 cut(s)	154, 560
Bso31I	GGTCTC	1 cut(s)	586
BsoBI	CYCGRG	2 cut(s)	176, 577
Bsp1286I	GDGCHC	3 cut(s)	300, 475, 629
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	652, 678
Bsp1720I	GCTNAGC	1 cut(s)	474
BspACI	CCGC	3 cut(s)	5, 44, 596
BspCNI	CTCAG	1 cut(s)	487
BspMI	ACCTGC	1 cut(s)	719
BspTNI	GGTCTC	1 cut(s)	586
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	129, 619
BssECI	CCNNGG	2 cut(s)	578, 668
BssMI	GATC	2 cut(s)	652, 678
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	2 cut(s)	115, 218
Bst6I	CTCTTC	3 cut(s)	74, 244, 332
BstAPI	GCANNNNNTGC	2 cut(s)	461, 633
BstAUI	TGTACA	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	640
BstDEI	CTNAG	1 cut(s)	474
BstF5I	GGATG	2 cut(s)	547, 695
BstHHI	GCGC	1 cut(s)	638
BstKTI	GATC	2 cut(s)	655, 681
BstMAI	GTCTC	2 cut(s)	58, 586
BstMBI	GATC	2 cut(s)	652, 678
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 263, 461, 470, 633
BstNI	CCWGG	1 cut(s)	516
BstNSI	RCATGY	1 cut(s)	642
BstSCI	CCNGG	2 cut(s)	514, 667
BstV1I	GCAGC	2 cut(s)	448, 585
BstX2I	RGATCY	1 cut(s)	678
BstYI	RGATCY	1 cut(s)	678
BtgZI	GCGATG	1 cut(s)	579
BtsCI	GGATG	2 cut(s)	547, 695
BtsIMutI	CAGTG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	719
Cac8I	GCNNGC	1 cut(s)	640
CfoI	GCGC	1 cut(s)	638
CsiI	ACCWGGT	1 cut(s)	514
Csp6I	GTAC	4 cut(s)	47, 133, 232, 327
CviAII	CATG	1 cut(s)	639
CviJI	RGCY	8 cut(s)	13, 65, 88, 128, 298, 461, 478, 608
CviKI_1	RGCY	8 cut(s)	13, 65, 88, 128, 298, 461, 478, 608
CviQI	GTAC	4 cut(s)	47, 133, 232, 327
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	2 cut(s)	654, 680
DpnII	GATC	2 cut(s)	652, 678
DraI	TTTAAA	2 cut(s)	370, 483
Eam1104I	CTCTTC	3 cut(s)	74, 244, 332
EarI	CTCTTC	3 cut(s)	74, 244, 332
Eco24I	GRGCYC	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	586
Eco88I	CYCGRG	2 cut(s)	176, 577
EcoRI	GAATTC	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	514
EcoT38I	GRGCYC	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	1 cut(s)	642
FaiI	YATR	4 cut(s)	380, 411, 640, 721
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	2 cut(s)	154, 560
FatI	CATG	1 cut(s)	638
Fnu4HI	GCNGC	3 cut(s)	6, 462, 599
FokI	GGATG	2 cut(s)	554, 702
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	3 cut(s)	6, 462, 599
FspAI	RTGCGCAY	1 cut(s)	637
FspBI	CTAG	3 cut(s)	167, 395, 659
FspI	TGCGCA	1 cut(s)	637
GlaI	GCGC	1 cut(s)	637
GluI	GCNGC	3 cut(s)	6, 462, 599
HapII	CCGG	1 cut(s)	668
HhaI	GCGC	1 cut(s)	638
Hin1II	CATG	1 cut(s)	642
Hin6I	GCGC	1 cut(s)	636
HinP1I	GCGC	1 cut(s)	636
HinfI	GANTC	3 cut(s)	305, 413, 535
HpaII	CCGG	1 cut(s)	668
HphI	GGTGA	2 cut(s)	230, 346
Hpy166II	GTNNAC	3 cut(s)	111, 155, 329
Hpy188I	TCNGA	1 cut(s)	591
Hpy188III	TCNNGA	5 cut(s)	246, 261, 276, 539, 577
Hpy8I	GTNNAC	3 cut(s)	111, 155, 329
HpyAV	CCTTC	4 cut(s)	85, 100, 436, 680
HpyCH4III	ACNGT	2 cut(s)	115, 218
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	522, 601
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 263, 461, 470, 633
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	1 cut(s)	642
HspAI	GCGC	1 cut(s)	636
Kzo9I	GATC	2 cut(s)	652, 678
Lsp1109I	GCAGC	2 cut(s)	448, 585
LweI	GCATC	3 cut(s)	136, 244, 623
MabI	ACCWGGT	1 cut(s)	514
MaeI	CTAG	3 cut(s)	167, 395, 659
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	4 cut(s)	193, 309, 374, 404
MalI	GATC	2 cut(s)	654, 680
MboI	GATC	2 cut(s)	652, 678
MboII	GAAGA	6 cut(s)	61, 131, 261, 349, 512, 662
MflI	RGATCY	1 cut(s)	678
MhlI	GDGCHC	3 cut(s)	300, 475, 629
MluCI	AATT	2 cut(s)	39, 171
MlyI	GAGTC	2 cut(s)	299, 544
MnlI	CCTC	8 cut(s)	68, 214, 348, 461, 538, 547, 562, 573
MseI	TTAA	4 cut(s)	369, 482, 645, 674
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	598
MspI	CCGG	1 cut(s)	668
MspR9I	CCNGG	2 cut(s)	516, 669
MvaI	CCWGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	5 cut(s)	71, 263, 461, 470, 633
NciI	CCSGG	1 cut(s)	669
NdeII	GATC	2 cut(s)	652, 678
NlaIII	CATG	1 cut(s)	642
NmuCI	GTSAC	1 cut(s)	193
NsbI	TGCGCA	1 cut(s)	637
NspI	RCATGY	1 cut(s)	642
PaeI	GCATGC	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	3 cut(s)	7, 463, 600
PleI	GAGTC	2 cut(s)	299, 543
PpsI	GAGTC	2 cut(s)	299, 543
Ppu21I	YACGTR	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	678
RsaI	GTAC	4 cut(s)	48, 134, 233, 328
RsaNI	GTAC	4 cut(s)	47, 133, 232, 327
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	4 cut(s)	369, 482, 645, 674
SatI	GCNGC	3 cut(s)	6, 462, 599
Sau3AI	GATC	2 cut(s)	652, 678
SchI	GAGTC	2 cut(s)	299, 544
ScrFI	CCNGG	2 cut(s)	516, 669
SduI	GDGCHC	3 cut(s)	300, 475, 629
SexAI	ACCWGGT	1 cut(s)	514
SfaNI	GCATC	3 cut(s)	136, 244, 623
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	2 cut(s)	417, 526
SmoI	CTYRAG	2 cut(s)	417, 526
SpeI	ACTAGT	1 cut(s)	394
SphI	GCATGC	1 cut(s)	642
Sse9I	AATT	2 cut(s)	39, 171
SsiI	CCGC	3 cut(s)	5, 44, 596
SspI	AATATT	1 cut(s)	437
SspMI	CTAG	3 cut(s)	167, 395, 659
StyD4I	CCNGG	2 cut(s)	514, 667
TaaI	ACNGT	2 cut(s)	115, 218
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	189
TasI	AATT	2 cut(s)	39, 171
TatI	WGTACW	2 cut(s)	132, 326
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	4 cut(s)	369, 482, 645, 674
Tru9I	TTAA	4 cut(s)	369, 482, 645, 674
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	2 cut(s)	461, 598
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	513, 663
TspRI	CASTG	1 cut(s)	118
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	1 cut(s)	642
XspI	CTAG	3 cut(s)	167, 395, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.