FvH4_6g40110

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012526
Physical Location & Seq
Forward (+)
31677831 .. 31681991
4161 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40110.t4

Sequence Viewer

Length: 1044 bp
ATGGGGGTGAAGCAGGCCCTAAAGAGCTTGGATGCGTTTCCACGCGCCGAGGATCATTTGCTGCAGAAAACTCAATCTGGGGCTTTTGTTTCTGTGGTTGGTCTAGTGATAATGGCGACATTGTTTTTGCACGAGCTGACGTATTATCTCTCGTCATATACAGTCCATCAGATGTCAGTGGACTTGAAGCGCGGAGAGACTCTTCCGATTCACATAAACATGACATTTCCGGCTTTACCTTGTGATGTCCTGAGTGTGGATGCGATTGATATGTCGGGCAAGCATGAAGTGGATCTCGACACAAATATATGGAAGCTTCGCCTTAACAGTCATGGCCACATCGTCGGAACTGAATATCTGTCTGACCTTGTGGAGAAGGAACATCACAAGCATGATGATGGTAAAGAGCATCATGACAAGGAAAACCATTTACATGGAGCTTTTGATACGGCCGCTGAAGAACTAATCAAGAAAGTAAAGCAAGCATTAGATGATGGAGAAGGATGCAGGGTTTATGGTGTTTTAGATGTCCAAAGGGTTGCTGGAAACTTTCATATATCAGTCCATGGGTTAAACATTTTCGTTGCACAAATGATTTTTGGAGGATCTAAAAATGTAAATGTTAGTCACATGATTCATGACTTGTCATTTGGCCCAAAATATCCAGGGATTCACAACCCTCTTGATGGAACGGAGCGCATTTTGCATGACACCAGTGGCATATTCAAATATTATATAAAGGTTGTTCCAACCGAGTATAGGTATATCTCAAAGCAAGTTTTGCCAACTAATCAATTCTCTGTGACAGAATATTATTCCCCTATGAAACAGTATGATAGGTCATGGCCAGGGGTCTACTTCTTGTATGATCTTTCGCCAATTACTGTAACTATCAAAGAAGAACGACGCAAATTTCTTCATTTCATTACTCGGCTTTGTGCAGTGTTGGGTGGTACCTTCGCTTTGACAGGAATGCTAGACCGATGGATGTTCAGGTTTGTTGAAGCATTGACTAAACCAAGTGCTAGAAGTGTACTTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

348

Amino Acids

39.44

Weight (kDa)

6.72

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERGIC_N PF13850 7 - 96 2e-28 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
COPIIcoated_ERV PF07970 153 - 327 1.6e-46 Endoplasmic reticulum vesicle transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22290 AT3G22290
fragaria_vesca FvH4_6g40110 FvH4_6g40110 FvH4_6g40110 FvH4_6g40110
malus_domestica MD09G1135200.v1.1 MD17G1124200.v1.1
prunus_persica Prupe.3G191500_v2.0.a1
pyrus_communis pycom09g05630 pycom17g11560
rosa_chinensis RchiOBHm_Chr2g0154741
rosa_laevigata RLG00000020799
rosa_multiflora Rmu_sc0001027.1_g000004
rosa_roxburghii Rroxscaffold_2G00094140
rosa_rugosa Rorug02G0444800
rosa_samantha Rh2BG521200 Rh2CG495500
rosa_wichuraiana Rw2G041970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 953
AccB1I GGYRCC 1 cut(s) 953
AccI GTMKAC 1 cut(s) 855
AccII CGCG 2 cut(s) 45, 192
AciI CCGC 2 cut(s) 192, 453
AclWI GGATC 3 cut(s) 60, 300, 613
AcoI YGGCCR 3 cut(s) 334, 450, 845
AcsI RAATTY 1 cut(s) 911
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 2 cut(s) 955, 1035
AfiI CCNNNNNNNGG 3 cut(s) 256, 686, 759
AgsI TTSAA 3 cut(s) 187, 727, 1004
AjnI CCWGG 2 cut(s) 664, 847
AluBI AGCT 4 cut(s) 27, 136, 316, 440
AluI AGCT 4 cut(s) 27, 136, 316, 440
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 3 cut(s) 60, 300, 613
AoxI GGCC 5 cut(s) 15, 334, 450, 652, 845
ApeKI GCWGC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 911
ArsI GACNNNNNNTTYG 4 cut(s) 109, 141, 632, 664
Asp718I GGTACC 1 cut(s) 953
AspLEI GCGC 3 cut(s) 47, 192, 699
AspS9I GGNCC 2 cut(s) 16, 653
AsuHPI GGTGA 1 cut(s) 19
BalI TGGCCA 2 cut(s) 336, 847
BanI GGYRCC 1 cut(s) 953
BauI CACGAG 1 cut(s) 131
BbvI GCAGC 1 cut(s) 48
BccI CCATC 5 cut(s) 174, 392, 488, 680, 978
BceAI ACGGC 1 cut(s) 465
BciT130I CCWGG 2 cut(s) 666, 849
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 3 cut(s) 104, 977, 1026
BfmI CTRYAG 1 cut(s) 62
BisI GCNGC 2 cut(s) 62, 453
BlsI GCNGC 2 cut(s) 63, 454
Bme1390I CCNGG 2 cut(s) 666, 849
BmgT120I GGNCC 2 cut(s) 16, 653
BmiI GGNNCC 1 cut(s) 955
BmrFI CCNGG 2 cut(s) 666, 849
BmsI GCATC 4 cut(s) 22, 250, 418, 494
BsaJI CCNNGG 4 cut(s) 48, 565, 665, 848
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 686, 759
Bse1I ACTGG 1 cut(s) 714
BseBI CCWGG 2 cut(s) 666, 849
BseDI CCNNGG 4 cut(s) 48, 565, 665, 848
BseGI GGATG 4 cut(s) 37, 265, 509, 993
BseLI CCNNNNNNNGG 3 cut(s) 256, 686, 759
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 714
BseX3I CGGCCG 1 cut(s) 450
BseXI GCAGC 1 cut(s) 48
BsgI GTGCAG 1 cut(s) 960
Bsh1236I CGCG 2 cut(s) 45, 192
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 5 cut(s) 17, 336, 452, 654, 847
BshNI GGYRCC 1 cut(s) 953
BsiEI CGRYCG 1 cut(s) 453
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 3 cut(s) 256, 686, 759
BsmAI GTCTC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 978
BsnI GGCC 5 cut(s) 17, 336, 452, 654, 847
Bsp143I GATC 4 cut(s) 52, 292, 605, 868
Bsp19I CCATGG 1 cut(s) 565
BspACI CCGC 2 cut(s) 192, 453
BspANI GGCC 5 cut(s) 17, 336, 452, 654, 847
BspCNI CTCAG 1 cut(s) 243
BspFNI CGCG 2 cut(s) 45, 192
BspHI TCATGA 2 cut(s) 412, 637
BspLI GGNNCC 1 cut(s) 955
BspMAI CTGCAG 1 cut(s) 66
BspPI GGATC 3 cut(s) 60, 300, 613
BspT107I GGYRCC 1 cut(s) 953
BsrI ACTGG 1 cut(s) 714
BssECI CCNNGG 4 cut(s) 48, 565, 665, 848
BssMI GATC 4 cut(s) 52, 292, 605, 868
BssSI CACGAG 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 565
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 2 cut(s) 666, 849
Bst4CI ACNGT 4 cut(s) 163, 329, 831, 886
Bst6I CTCTTC 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 781
BstC8I GCNNGC 3 cut(s) 15, 281, 483
BstDEI CTNAG 1 cut(s) 251
BstDSI CCRYGG 1 cut(s) 565
BstF5I GGATG 4 cut(s) 37, 265, 509, 993
BstFNI CGCG 2 cut(s) 45, 192
BstHHI GCGC 3 cut(s) 47, 192, 699
BstKTI GATC 4 cut(s) 55, 295, 608, 871
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 4 cut(s) 52, 292, 605, 868
BstMCI CGRYCG 1 cut(s) 453
BstMWI GCNNNNNNNGC 2 cut(s) 703, 781
BstNI CCWGG 2 cut(s) 666, 849
BstSCI CCNGG 2 cut(s) 664, 847
BstSFI CTRYAG 1 cut(s) 62
BstUI CGCG 2 cut(s) 45, 192
BstV1I GCAGC 1 cut(s) 48
BstX2I RGATCY 2 cut(s) 292, 605
BstXI CCANNNNNNTGG 1 cut(s) 434
BstYI RGATCY 2 cut(s) 292, 605
BstZI CGGCCG 1 cut(s) 450
BsuRI GGCC 5 cut(s) 17, 336, 452, 654, 847
BtgI CCRYGG 1 cut(s) 565
BtsCI GGATG 4 cut(s) 37, 265, 509, 993
BtsI GCAGTG 1 cut(s) 948
BtsIMutI CAGTG 3 cut(s) 183, 721, 948
Cac8I GCNNGC 3 cut(s) 15, 281, 483
CciI TCATGA 2 cut(s) 412, 637
CfoI GCGC 3 cut(s) 47, 192, 699
Cfr13I GGNCC 2 cut(s) 16, 653
CseI GACGC 1 cut(s) 915
Csp6I GTAC 2 cut(s) 954, 1034
CviQI GTAC 2 cut(s) 954, 1034
DdeI CTNAG 1 cut(s) 251
DpnI GATC 4 cut(s) 54, 294, 607, 870
DpnII GATC 4 cut(s) 52, 292, 605, 868
EaeI YGGCCR 3 cut(s) 334, 450, 845
EagI CGGCCG 1 cut(s) 450
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
EclXI CGGCCG 1 cut(s) 450
Eco130I CCWWGG 1 cut(s) 565
Eco52I CGGCCG 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 16
EcoRII CCWGG 2 cut(s) 664, 847
EcoT14I CCWWGG 1 cut(s) 565
ErhI CCWWGG 1 cut(s) 565
FblI GTMKAC 1 cut(s) 855
Fnu4HI GCNGC 2 cut(s) 62, 453
FokI GGATG 4 cut(s) 44, 272, 516, 1000
Fsp4HI GCNGC 2 cut(s) 62, 453
FspBI CTAG 3 cut(s) 104, 977, 1026
GlaI GCGC 3 cut(s) 46, 191, 698
GluI GCNGC 2 cut(s) 62, 453
HaeIII GGCC 5 cut(s) 17, 336, 452, 654, 847
HapII CCGG 1 cut(s) 230
HgaI GACGC 1 cut(s) 915
HhaI GCGC 3 cut(s) 47, 192, 699
Hin6I GCGC 3 cut(s) 45, 190, 697
HinP1I GCGC 3 cut(s) 45, 190, 697
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 4 cut(s) 199, 208, 634, 670
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 3 cut(s) 181, 856, 1034
Hpy188I TCNGA 4 cut(s) 171, 207, 347, 364
Hpy188III TCNNGA 6 cut(s) 250, 296, 413, 469, 638, 683
Hpy8I GTNNAC 3 cut(s) 181, 856, 1034
Hpy99I CGWCG 2 cut(s) 347, 909
HpyAV CCTTC 3 cut(s) 370, 494, 967
HpyCH4III ACNGT 4 cut(s) 163, 329, 831, 886
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 6 cut(s) 64, 130, 507, 587, 706, 941
HpyF10VI GCNNNNNNNGC 2 cut(s) 703, 781
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 140
HspAI GCGC 3 cut(s) 45, 190, 697
KpnI GGTACC 1 cut(s) 957
Kzo9I GATC 4 cut(s) 52, 292, 605, 868
LmnI GCTCC 2 cut(s) 437, 694
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 4 cut(s) 22, 250, 418, 494
MaeI CTAG 3 cut(s) 104, 977, 1026
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 3 cut(s) 626, 802, 886
MalI GATC 4 cut(s) 54, 294, 607, 870
MboI GATC 4 cut(s) 52, 292, 605, 868
MboII GAAGA 4 cut(s) 194, 470, 908, 911
MflI RGATCY 2 cut(s) 292, 605
MlsI TGGCCA 2 cut(s) 336, 847
MluCI AATT 3 cut(s) 794, 879, 911
MluNI TGGCCA 2 cut(s) 336, 847
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 2 cut(s) 325, 773
MnlI CCTC 3 cut(s) 43, 596, 690
Mox20I TGGCCA 2 cut(s) 336, 847
MscI TGGCCA 2 cut(s) 336, 847
MseI TTAA 2 cut(s) 324, 572
MslI CAYNNNNRTG 4 cut(s) 218, 390, 396, 432
Msp20I TGGCCA 2 cut(s) 336, 847
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 2 cut(s) 666, 849
Mva1269I GAATGC 1 cut(s) 978
MvaI CCWGG 2 cut(s) 666, 849
MvnI CGCG 2 cut(s) 45, 192
MwoI GCNNNNNNNGC 2 cut(s) 703, 781
NcoI CCATGG 1 cut(s) 565
NdeII GATC 4 cut(s) 52, 292, 605, 868
NlaIV GGNNCC 1 cut(s) 955
NmeAIII GCCGAG 2 cut(s) 73, 910
NmuCI GTSAC 2 cut(s) 626, 802
PagI TCATGA 2 cut(s) 412, 637
PctI GAATGC 1 cut(s) 978
PfeI GAWTC 3 cut(s) 208, 634, 670
PkrI GCNGC 2 cut(s) 63, 454
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 664, 847
PspGI CCWGG 2 cut(s) 664, 847
PspN4I GGNNCC 1 cut(s) 955
PspPI GGNCC 2 cut(s) 16, 653
PstI CTGCAG 1 cut(s) 66
PsuI RGATCY 2 cut(s) 292, 605
RsaI GTAC 2 cut(s) 955, 1035
RsaNI GTAC 2 cut(s) 954, 1034
RseI CAYNNNNRTG 4 cut(s) 218, 390, 396, 432
SaqAI TTAA 2 cut(s) 324, 572
SatI GCNGC 2 cut(s) 62, 453
Sau3AI GATC 4 cut(s) 52, 292, 605, 868
Sau96I GGNCC 2 cut(s) 16, 653
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 666, 849
SfaNI GCATC 4 cut(s) 22, 250, 418, 494
SfcI CTRYAG 1 cut(s) 62
SmiMI CAYNNNNRTG 4 cut(s) 218, 390, 396, 432
Sse9I AATT 3 cut(s) 794, 879, 911
SsiI CCGC 2 cut(s) 192, 453
SspI AATATT 2 cut(s) 731, 812
SspMI CTAG 3 cut(s) 104, 977, 1026
StyD4I CCNGG 2 cut(s) 664, 847
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 4 cut(s) 163, 329, 831, 886
TaiI ACGT 1 cut(s) 143
TaqI TCGA 2 cut(s) 297, 1039
TaqII GACCGA 1 cut(s) 996
TasI AATT 3 cut(s) 794, 879, 911
TatI WGTACW 1 cut(s) 1033
TauI GCSGC 1 cut(s) 455
TfiI GAWTC 3 cut(s) 208, 634, 670
Tru1I TTAA 2 cut(s) 324, 572
Tru9I TTAA 2 cut(s) 324, 572
TscAI CASTG 3 cut(s) 183, 721, 948
TseFI GTSAC 2 cut(s) 626, 802
TseI GCWGC 1 cut(s) 61
Tsp45I GTSAC 2 cut(s) 626, 802
TspDTI ATGAA 6 cut(s) 300, 542, 626, 839, 908, 913
TspGWI ACGGA 1 cut(s) 707
TspRI CASTG 3 cut(s) 183, 721, 948
XapI RAATTY 1 cut(s) 911
XcmI CCANNNNNNNNNTGG 1 cut(s) 539
XmiI GTMKAC 1 cut(s) 855
XspI CTAG 3 cut(s) 104, 977, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.