Rroxscaffold_2G00094140

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012526
Physical Location & Seq
Reverse (-)
15453573 .. 15457582
4010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094140.1

Sequence Viewer

Length: 987 bp
ATGGGGATGAAACAAGCCTTAAAGAGCTTGGATGCGTTTCCTCGGGCCGAGGAGCATTTGTTGCAGAAAACTCAATCTGGGGCTTTTGTTTCTGTTGTTGGTCTGCTCATAATGGCGACATTGTTTTTGCACGAGCTGAGATATTATCTTTCATCGTATACTGTTCATCAGATGTCTGTGGACTTGAAGCGCGGCGAGACTCTTCCAATTCACATTAACATGACGTTTCCGGCTCTACCTTGTGATGAGTGGCTACAGCTTCGCCTTAACAGTCATGGACACATCATCGGCACTGAATATTTGTCTGACCTTGTGGAGAAGGAACATTCTCACAATCATGATGATGGTAAAGAGCATCACCAGGAAAACCATTTACATGGAGCTTTTGATCTAGCTGCAGAAGAACTGATCAAGAAAGTAAAGAAAGCATTGGATGATGGAGAAGGATGCAGGGTTTATGGTGTTTTAGATGTCCAAAGGGTTGCTGGAAACTTTCATATATCAGTTCATGGGTTAAACATTTTCGTTGCACAAATGATTTTTGAAGGATCTAAAAATGTAAATGTAAGTCACATTATTCATGACTTGTCATTTGGCCTAAAATATCCAGGGATTCACAACCCACTTGACGGAACGGAGCGCATTTTGCATGGCTCCAGTGGCACATTCAAATATTATATAAAGATTGTTCCAACTGAGTATAGGTATCTCTCAAAGGAAGTTTTGCCAACTAATCAATTCTCTGTGACAGAATATTATTCCCCAATGAAAGAGTATGATAGGTCATGGCCAGCGGTCTACTTCTTGTATGATCTTTCGCCAATTACTGTAACTATCAAAGAAGAACGACGCAAATTTCTTCATTTCATCACTCGGCTTTGTGCGGTATTGGGTGGTACCTTCGCTTTGACAGGAATGCTAGACCGATGGATGTTCAGGTTTGTTGAAGCATTGACTAAACCAAATGCTAGAATTGTACTGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

328

Amino Acids

37.6

Weight (kDa)

6.86

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERGIC_N PF13850 7 - 82 1.4e-22 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
COPIIcoated_ERV PF07970 134 - 308 2.1e-45 Endoplasmic reticulum vesicle transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22290 AT3G22290
fragaria_vesca FvH4_6g40110 FvH4_6g40110 FvH4_6g40110 FvH4_6g40110
malus_domestica MD09G1135200.v1.1 MD17G1124200.v1.1
prunus_persica Prupe.3G191500_v2.0.a1
pyrus_communis pycom09g05630 pycom17g11560
rosa_chinensis RchiOBHm_Chr2g0154741
rosa_laevigata RLG00000020799
rosa_multiflora Rmu_sc0001027.1_g000004
rosa_roxburghii Rroxscaffold_2G00094140
rosa_rugosa Rorug02G0444800
rosa_samantha Rh2BG521200 Rh2CG495500
rosa_wichuraiana Rw2G041970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 896
AccB1I GGYRCC 1 cut(s) 896
AccI GTMKAC 2 cut(s) 158, 798
AccII CGCG 1 cut(s) 192
AciI CCGC 3 cut(s) 192, 794, 884
AclWI GGATC 1 cut(s) 556
AcoI YGGCCR 1 cut(s) 788
AcsI RAATTY 1 cut(s) 854
AfaI GTAC 2 cut(s) 898, 978
AfiI CCNNNNNNNGG 1 cut(s) 629
AgsI TTSAA 4 cut(s) 187, 545, 670, 947
AjnI CCWGG 2 cut(s) 360, 607
AluBI AGCT 5 cut(s) 27, 136, 259, 383, 395
AluI AGCT 5 cut(s) 27, 136, 259, 383, 395
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 1 cut(s) 556
Ama87I CYCGRG 1 cut(s) 42
AoxI GGCC 3 cut(s) 45, 595, 788
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 1 cut(s) 854
ArsI GACNNNNNNTTYG 4 cut(s) 109, 141, 575, 607
Asp718I GGTACC 1 cut(s) 896
AspLEI GCGC 2 cut(s) 192, 642
AspS9I GGNCC 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 350
AvaI CYCGRG 1 cut(s) 42
BalI TGGCCA 1 cut(s) 790
BanI GGYRCC 1 cut(s) 896
BauI CACGAG 1 cut(s) 131
BbvI GCAGC 1 cut(s) 382
BccI CCATC 3 cut(s) 338, 431, 921
BciT130I CCWGG 2 cut(s) 362, 609
BclI TGATCA 1 cut(s) 408
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 3 cut(s) 392, 920, 969
BfmI CTRYAG 2 cut(s) 254, 396
BisI GCNGC 2 cut(s) 193, 396
BlsI GCNGC 2 cut(s) 194, 397
Bme1390I CCNGG 2 cut(s) 362, 609
BmeT110I CYCGRG 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 2 cut(s) 655, 898
BmrFI CCNGG 2 cut(s) 362, 609
BmsI GCATC 3 cut(s) 22, 364, 437
BpmI CTGGAG 1 cut(s) 640
BsaJI CCNNGG 3 cut(s) 41, 48, 608
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse1I ACTGG 1 cut(s) 657
BseBI CCWGG 2 cut(s) 362, 609
BseDI CCNNGG 3 cut(s) 41, 48, 608
BseGI GGATG 5 cut(s) 12, 37, 439, 452, 936
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMII CTCAG 2 cut(s) 128, 687
BseNI ACTGG 1 cut(s) 657
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 382
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 3 cut(s) 47, 597, 790
BshNI GGYRCC 1 cut(s) 896
BsiHKCI CYCGRG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 921
BsnI GGCC 3 cut(s) 47, 597, 790
BsoBI CYCGRG 1 cut(s) 42
Bsp143I GATC 4 cut(s) 388, 408, 548, 811
BspACI CCGC 3 cut(s) 192, 794, 884
BspANI GGCC 3 cut(s) 47, 597, 790
BspCNI CTCAG 2 cut(s) 129, 688
BspFNI CGCG 1 cut(s) 192
BspHI TCATGA 2 cut(s) 337, 580
BspLI GGNNCC 2 cut(s) 655, 898
BspMAI CTGCAG 1 cut(s) 400
BspPI GGATC 1 cut(s) 556
BspT107I GGYRCC 1 cut(s) 896
BsrI ACTGG 1 cut(s) 657
BssECI CCNNGG 3 cut(s) 41, 48, 608
BssMI GATC 4 cut(s) 388, 408, 548, 811
BssNAI GTATAC 1 cut(s) 159
BssSI CACGAG 1 cut(s) 131
Bst1107I GTATAC 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 2 cut(s) 362, 609
Bst4CI ACNGT 3 cut(s) 163, 272, 829
Bst6I CTCTTC 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 792
BstDEI CTNAG 2 cut(s) 137, 696
BstF5I GGATG 5 cut(s) 12, 37, 439, 452, 936
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 2 cut(s) 192, 642
BstKTI GATC 4 cut(s) 391, 411, 551, 814
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 4 cut(s) 388, 408, 548, 811
BstMWI GCNNNNNNNGC 3 cut(s) 61, 646, 660
BstNI CCWGG 2 cut(s) 362, 609
BstSCI CCNGG 2 cut(s) 360, 607
BstSFI CTRYAG 2 cut(s) 254, 396
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 548
BstXI CCANNNNNNTGG 1 cut(s) 377
BstYI RGATCY 1 cut(s) 548
BstZ17I GTATAC 1 cut(s) 159
BsuRI GGCC 3 cut(s) 47, 597, 790
BtsCI GGATG 5 cut(s) 12, 37, 439, 452, 936
BtsIMutI CAGTG 2 cut(s) 291, 664
Cac8I GCNNGC 1 cut(s) 792
CciI TCATGA 2 cut(s) 337, 580
CfoI GCGC 2 cut(s) 192, 642
Cfr13I GGNCC 1 cut(s) 45
CseI GACGC 1 cut(s) 858
Csp6I GTAC 2 cut(s) 897, 977
CviAII CATG 8 cut(s) 220, 275, 338, 377, 509, 581, 650, 786
CviQI GTAC 2 cut(s) 897, 977
DdeI CTNAG 2 cut(s) 137, 696
DpnI GATC 4 cut(s) 390, 410, 550, 813
DpnII GATC 4 cut(s) 388, 408, 548, 811
EaeI YGGCCR 1 cut(s) 788
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 42
EcoRII CCWGG 2 cut(s) 360, 607
FaeI CATG 8 cut(s) 223, 278, 341, 380, 512, 584, 653, 789
FatI CATG 8 cut(s) 219, 274, 337, 376, 508, 580, 649, 785
FbaI TGATCA 1 cut(s) 408
FblI GTMKAC 2 cut(s) 158, 798
Fnu4HI GCNGC 2 cut(s) 193, 396
FokI GGATG 5 cut(s) 19, 44, 446, 459, 943
Fsp4HI GCNGC 2 cut(s) 193, 396
FspBI CTAG 3 cut(s) 392, 920, 969
GlaI GCGC 2 cut(s) 191, 641
GluI GCNGC 2 cut(s) 193, 396
GsuI CTGGAG 1 cut(s) 640
HaeIII GGCC 3 cut(s) 47, 597, 790
HapII CCGG 1 cut(s) 230
HgaI GACGC 1 cut(s) 858
HhaI GCGC 2 cut(s) 192, 642
Hin1II CATG 8 cut(s) 223, 278, 341, 380, 512, 584, 653, 789
Hin6I GCGC 2 cut(s) 190, 640
HinP1I GCGC 2 cut(s) 190, 640
HinfI GANTC 2 cut(s) 199, 613
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 3 cut(s) 159, 181, 799
Hpy188I TCNGA 2 cut(s) 171, 307
Hpy188III TCNNGA 3 cut(s) 338, 412, 581
Hpy8I GTNNAC 3 cut(s) 159, 181, 799
Hpy99I CGWCG 1 cut(s) 852
HpyAV CCTTC 4 cut(s) 313, 437, 539, 910
HpyCH4III ACNGT 3 cut(s) 163, 272, 829
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 6 cut(s) 64, 130, 398, 450, 530, 649
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 646, 660
HpyF3I CTNAG 2 cut(s) 137, 696
HpySE526I ACGT 1 cut(s) 224
Hsp92II CATG 8 cut(s) 223, 278, 341, 380, 512, 584, 653, 789
HspAI GCGC 2 cut(s) 190, 640
KpnI GGTACC 1 cut(s) 900
Ksp22I TGATCA 1 cut(s) 408
Kzo9I GATC 4 cut(s) 388, 408, 548, 811
LmnI GCTCC 4 cut(s) 52, 380, 637, 659
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 3 cut(s) 22, 364, 437
MaeI CTAG 3 cut(s) 392, 920, 969
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 3 cut(s) 569, 745, 829
MalI GATC 4 cut(s) 390, 410, 550, 813
MboI GATC 4 cut(s) 388, 408, 548, 811
MboII GAAGA 4 cut(s) 194, 413, 851, 854
MflI RGATCY 1 cut(s) 548
MlsI TGGCCA 1 cut(s) 790
MluCI AATT 5 cut(s) 207, 737, 822, 854, 972
MluNI TGGCCA 1 cut(s) 790
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 716
MnlI CCTC 2 cut(s) 43, 51
Mox20I TGGCCA 1 cut(s) 790
MscI TGGCCA 1 cut(s) 790
MseI TTAA 4 cut(s) 20, 216, 267, 515
MslI CAYNNNNRTG 4 cut(s) 218, 336, 342, 375
Msp20I TGGCCA 1 cut(s) 790
MspA1I CMGCKG 1 cut(s) 794
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 2 cut(s) 362, 609
Mva1269I GAATGC 1 cut(s) 921
MvaI CCWGG 2 cut(s) 362, 609
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 3 cut(s) 61, 646, 660
NdeII GATC 4 cut(s) 388, 408, 548, 811
NlaIII CATG 8 cut(s) 223, 278, 341, 380, 512, 584, 653, 789
NlaIV GGNNCC 2 cut(s) 655, 898
NmeAIII GCCGAG 2 cut(s) 73, 853
NmuCI GTSAC 2 cut(s) 569, 745
PagI TCATGA 2 cut(s) 337, 580
PctI GAATGC 1 cut(s) 921
PfeI GAWTC 1 cut(s) 613
PkrI GCNGC 2 cut(s) 194, 397
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 360, 607
PspGI CCWGG 2 cut(s) 360, 607
PspN4I GGNNCC 2 cut(s) 655, 898
PspPI GGNCC 1 cut(s) 45
PstI CTGCAG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 548
RsaI GTAC 2 cut(s) 898, 978
RsaNI GTAC 2 cut(s) 897, 977
RseI CAYNNNNRTG 4 cut(s) 218, 336, 342, 375
SaqAI TTAA 4 cut(s) 20, 216, 267, 515
SatI GCNGC 2 cut(s) 193, 396
Sau3AI GATC 4 cut(s) 388, 408, 548, 811
Sau96I GGNCC 1 cut(s) 45
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 362, 609
SfaNI GCATC 3 cut(s) 22, 364, 437
SfcI CTRYAG 2 cut(s) 254, 396
SmiMI CAYNNNNRTG 4 cut(s) 218, 336, 342, 375
Sse9I AATT 5 cut(s) 207, 737, 822, 854, 972
SsiI CCGC 3 cut(s) 192, 794, 884
SspI AATATT 3 cut(s) 299, 674, 755
SspMI CTAG 3 cut(s) 392, 920, 969
StyD4I CCNGG 2 cut(s) 360, 607
TaaI ACNGT 3 cut(s) 163, 272, 829
TaiI ACGT 1 cut(s) 227
TaqII GACCGA 1 cut(s) 939
TasI AATT 5 cut(s) 207, 737, 822, 854, 972
TatI WGTACW 1 cut(s) 976
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 1 cut(s) 613
Tru1I TTAA 4 cut(s) 20, 216, 267, 515
Tru9I TTAA 4 cut(s) 20, 216, 267, 515
TscAI CASTG 2 cut(s) 298, 664
TseFI GTSAC 2 cut(s) 569, 745
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 2 cut(s) 569, 745
TspDTI ATGAA 9 cut(s) 23, 141, 155, 485, 497, 569, 782, 851, 856
TspGWI ACGGA 2 cut(s) 645, 650
TspRI CASTG 2 cut(s) 298, 664
XapI RAATTY 1 cut(s) 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 482
XmiI GTMKAC 2 cut(s) 158, 798
XspI CTAG 3 cut(s) 392, 920, 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.