RLG00000020799

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012526
Physical Location & Seq
Forward (+)
68896044 .. 68899384
3341 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020799

Sequence Viewer

Length: 1038 bp
ATGAAACAAGCCTTAAAGAGCTTGGATGCGTTTCCTCGAGCCGAGGAGCATTTGTTGCAGAAGACTCAATCTGGGGCTTTTGTTTCTGTTGTTGGTCTGCTTATAATGGCGACATTGTTTTTGCACGAGCTGAGATATTATCTTTCATCGTATACTGTTCATCAGATGTCTGTGGACTTGAAGCGCGGCGAGACTCTTCCAATTCACATAAACATGACGTTTCCGGCTTTACCTTGTGATGTTCTGAGTGTGGATGCAATTGATATGTCGGGCAAGCATGAAGTGGATCTTGACACAAATATATGGAAACTTCGCCTTAACAGTCATGGACACATCATCGGCACTGAATATTTGTCTGACCTTGTGGAGAAGGAACATTCTCACAAGCATGATGATGGTAAAGAGCATCACGAGGAAAACTATTTACATGGAGCTTTTGATCTAGCTGCAGAAGAACTGATCAAGAAAGTAAAGAAAGCATTAGATGATGGAGAAGGATGCAGGGTTTATGGTGTTTTAGATGTCCAAAGGGTTGCTGGAAACTTTCATATATCTGTTCATGGGTTAAACATATTCGTTGCACAAATGATTTTTGAAGGATCGAAAAATGTAAATGTAAGTCACATTATTCATGACTTGTCATTTGGCCCAAAATATCCAGGGATTCACAACCCACTTGACGGAACGGAGCGCATTTTGCATGGCACCAGTGGCACATTCAAATATTATATAAAGATTGTTCCAACTGAGTATAGGTATCTCTCAAAGGAAGTTTTGCCAACTAATCAATTCTCTGTGACAGAATATTATTCCCCAATGAGAGAGTATGATAGGTCATGGCCAGCGGTCTACTTCTTGTATGATCTTTCGCCAATTACTGTAACTATCAAAGAAGAACGACGCAAATTTCTTCATTTCATCACTCGGCTTTGTGCAGTATTGGGTGGTACCTTCGCTTTGACAGGAATGCTAGACCGATGGATGTTCAGGTTTGTTGAAGCATTGACTAAACCAAATGCTAGAATTGTACTGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

346

Amino Acids

39.49

Weight (kDa)

6.57

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERGIC_N PF13850 5 - 94 1.2e-28 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
COPIIcoated_ERV PF07970 151 - 325 9.8e-46 Endoplasmic reticulum vesicle transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22290 AT3G22290
fragaria_vesca FvH4_6g40110 FvH4_6g40110 FvH4_6g40110 FvH4_6g40110
malus_domestica MD09G1135200.v1.1 MD17G1124200.v1.1
prunus_persica Prupe.3G191500_v2.0.a1
pyrus_communis pycom09g05630 pycom17g11560
rosa_chinensis RchiOBHm_Chr2g0154741
rosa_laevigata RLG00000020799
rosa_multiflora Rmu_sc0001027.1_g000004
rosa_roxburghii Rroxscaffold_2G00094140
rosa_rugosa Rorug02G0444800
rosa_samantha Rh2BG521200 Rh2CG495500
rosa_wichuraiana Rw2G041970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
Acc65I GGTACC 1 cut(s) 947
AccB1I GGYRCC 2 cut(s) 704, 947
AccI GTMKAC 2 cut(s) 152, 849
AccII CGCG 1 cut(s) 186
AciI CCGC 2 cut(s) 186, 845
AclWI GGATC 2 cut(s) 294, 607
AcoI YGGCCR 1 cut(s) 839
AcsI RAATTY 1 cut(s) 905
AfaI GTAC 2 cut(s) 949, 1029
AfiI CCNNNNNNNGG 1 cut(s) 680
AgsI TTSAA 4 cut(s) 181, 596, 721, 998
AjnI CCWGG 1 cut(s) 658
AluBI AGCT 4 cut(s) 21, 130, 434, 446
AluI AGCT 4 cut(s) 21, 130, 434, 446
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 2 cut(s) 294, 607
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 2 cut(s) 646, 839
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 1 cut(s) 905
ArsI GACNNNNNNTTYG 4 cut(s) 103, 135, 626, 658
Asp718I GGTACC 1 cut(s) 947
AspLEI GCGC 2 cut(s) 186, 693
AspS9I GGNCC 1 cut(s) 647
AvaI CYCGRG 1 cut(s) 36
BalI TGGCCA 1 cut(s) 841
BanI GGYRCC 2 cut(s) 704, 947
BauI CACGAG 2 cut(s) 125, 410
BbsI GAAGAC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 433
BccI CCATC 3 cut(s) 389, 482, 972
BciT130I CCWGG 1 cut(s) 660
BclI TGATCA 1 cut(s) 459
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 3 cut(s) 443, 971, 1020
BfmI CTRYAG 1 cut(s) 447
BisI GCNGC 2 cut(s) 187, 447
BlsI GCNGC 2 cut(s) 188, 448
Bme1390I CCNGG 1 cut(s) 660
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 647
BmiI GGNNCC 2 cut(s) 706, 949
BmrFI CCNGG 1 cut(s) 660
BmsI GCATC 4 cut(s) 16, 244, 415, 488
BpiI GAAGAC 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 42, 659
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 680
Bse1I ACTGG 1 cut(s) 708
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 2 cut(s) 42, 659
BseGI GGATG 4 cut(s) 31, 259, 503, 987
BseLI CCNNNNNNNGG 1 cut(s) 680
BseMII CTCAG 3 cut(s) 122, 236, 738
BseNI ACTGG 1 cut(s) 708
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 433
BsgI GTGCAG 1 cut(s) 954
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 2 cut(s) 648, 841
BshNI GGYRCC 2 cut(s) 704, 947
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 680
BsmAI GTCTC 1 cut(s) 185
BsmI GAATGC 1 cut(s) 972
BsnI GGCC 2 cut(s) 648, 841
BsoBI CYCGRG 1 cut(s) 36
Bsp143I GATC 5 cut(s) 286, 439, 459, 599, 862
BspACI CCGC 2 cut(s) 186, 845
BspANI GGCC 2 cut(s) 648, 841
BspCNI CTCAG 3 cut(s) 123, 237, 739
BspFNI CGCG 1 cut(s) 186
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 2 cut(s) 706, 949
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 2 cut(s) 294, 607
BspT107I GGYRCC 2 cut(s) 704, 947
BsrI ACTGG 1 cut(s) 708
BssECI CCNNGG 2 cut(s) 42, 659
BssMI GATC 5 cut(s) 286, 439, 459, 599, 862
BssNAI GTATAC 1 cut(s) 153
BssSI CACGAG 2 cut(s) 125, 410
Bst1107I GTATAC 1 cut(s) 153
Bst2BI CACGAG 2 cut(s) 125, 410
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 3 cut(s) 157, 323, 880
Bst6I CTCTTC 1 cut(s) 201
BstAPI GCANNNNNTGC 1 cut(s) 55
BstC8I GCNNGC 2 cut(s) 275, 843
BstDEI CTNAG 3 cut(s) 131, 245, 747
BstF5I GGATG 4 cut(s) 31, 259, 503, 987
BstFNI CGCG 1 cut(s) 186
BstHHI GCGC 2 cut(s) 186, 693
BstKTI GATC 5 cut(s) 289, 442, 462, 602, 865
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 5 cut(s) 286, 439, 459, 599, 862
BstMWI GCNNNNNNNGC 3 cut(s) 55, 697, 711
BstNI CCWGG 1 cut(s) 660
BstSCI CCNGG 1 cut(s) 658
BstSFI CTRYAG 1 cut(s) 447
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 433
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BstZ17I GTATAC 1 cut(s) 153
BsuRI GGCC 2 cut(s) 648, 841
BtsCI GGATG 4 cut(s) 31, 259, 503, 987
BtsIMutI CAGTG 2 cut(s) 342, 715
Cac8I GCNNGC 2 cut(s) 275, 843
CciI TCATGA 1 cut(s) 631
CfoI GCGC 2 cut(s) 186, 693
Cfr13I GGNCC 1 cut(s) 647
CseI GACGC 1 cut(s) 909
Csp6I GTAC 2 cut(s) 948, 1028
CviAII CATG 9 cut(s) 214, 278, 326, 389, 428, 560, 632, 701, 837
CviQI GTAC 2 cut(s) 948, 1028
DdeI CTNAG 3 cut(s) 131, 245, 747
DpnI GATC 5 cut(s) 288, 441, 461, 601, 864
DpnII GATC 5 cut(s) 286, 439, 459, 599, 862
EaeI YGGCCR 1 cut(s) 839
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 658
FaeI CATG 9 cut(s) 217, 281, 329, 392, 431, 563, 635, 704, 840
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FatI CATG 9 cut(s) 213, 277, 325, 388, 427, 559, 631, 700, 836
FbaI TGATCA 1 cut(s) 459
FblI GTMKAC 2 cut(s) 152, 849
Fnu4HI GCNGC 2 cut(s) 187, 447
FokI GGATG 4 cut(s) 38, 266, 510, 994
Fsp4HI GCNGC 2 cut(s) 187, 447
FspBI CTAG 3 cut(s) 443, 971, 1020
GlaI GCGC 2 cut(s) 185, 692
GluI GCNGC 2 cut(s) 187, 447
HaeIII GGCC 2 cut(s) 648, 841
HapII CCGG 1 cut(s) 224
HgaI GACGC 1 cut(s) 909
HhaI GCGC 2 cut(s) 186, 693
Hin1II CATG 9 cut(s) 217, 281, 329, 392, 431, 563, 635, 704, 840
Hin6I GCGC 2 cut(s) 184, 691
HinP1I GCGC 2 cut(s) 184, 691
HinfI GANTC 3 cut(s) 64, 193, 664
HpaII CCGG 1 cut(s) 224
Hpy166II GTNNAC 3 cut(s) 153, 175, 850
Hpy188I TCNGA 3 cut(s) 165, 246, 358
Hpy188III TCNNGA 4 cut(s) 290, 410, 463, 632
Hpy8I GTNNAC 3 cut(s) 153, 175, 850
Hpy99I CGWCG 1 cut(s) 903
HpyAV CCTTC 4 cut(s) 364, 488, 590, 961
HpyCH4III ACNGT 3 cut(s) 157, 323, 880
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 8 cut(s) 58, 124, 257, 449, 501, 581, 700, 935
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 697, 711
HpyF3I CTNAG 3 cut(s) 131, 245, 747
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 9 cut(s) 217, 281, 329, 392, 431, 563, 635, 704, 840
HspAI GCGC 2 cut(s) 184, 691
KpnI GGTACC 1 cut(s) 951
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 5 cut(s) 286, 439, 459, 599, 862
LmnI GCTCC 3 cut(s) 46, 431, 688
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 4 cut(s) 16, 244, 415, 488
MaeI CTAG 3 cut(s) 443, 971, 1020
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 3 cut(s) 620, 796, 880
MalI GATC 5 cut(s) 288, 441, 461, 601, 864
MboI GATC 5 cut(s) 286, 439, 459, 599, 862
MboII GAAGA 5 cut(s) 73, 188, 464, 902, 905
MfeI CAATTG 1 cut(s) 258
MflI RGATCY 1 cut(s) 286
MlsI TGGCCA 1 cut(s) 841
MluCI AATT 6 cut(s) 201, 258, 788, 873, 905, 1023
MluNI TGGCCA 1 cut(s) 841
MlyI GAGTC 2 cut(s) 58, 187
MmeI TCCRAC 1 cut(s) 767
MnlI CCTC 3 cut(s) 37, 45, 406
Mox20I TGGCCA 1 cut(s) 841
MscI TGGCCA 1 cut(s) 841
MseI TTAA 3 cut(s) 14, 318, 566
MslI CAYNNNNRTG 3 cut(s) 212, 387, 393
Msp20I TGGCCA 1 cut(s) 841
MspA1I CMGCKG 1 cut(s) 845
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 660
MunI CAATTG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 972
MvaI CCWGG 1 cut(s) 660
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 3 cut(s) 55, 697, 711
NdeII GATC 5 cut(s) 286, 439, 459, 599, 862
NlaIII CATG 9 cut(s) 217, 281, 329, 392, 431, 563, 635, 704, 840
NlaIV GGNNCC 2 cut(s) 706, 949
NmeAIII GCCGAG 2 cut(s) 67, 904
NmuCI GTSAC 2 cut(s) 620, 796
PaeR7I CTCGAG 1 cut(s) 36
PagI TCATGA 1 cut(s) 631
PctI GAATGC 1 cut(s) 972
PfeI GAWTC 1 cut(s) 664
PkrI GCNGC 2 cut(s) 188, 448
PleI GAGTC 2 cut(s) 58, 187
PpsI GAGTC 2 cut(s) 58, 187
PsiI TTATAA 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 658
PspGI CCWGG 1 cut(s) 658
PspN4I GGNNCC 2 cut(s) 706, 949
PspPI GGNCC 1 cut(s) 647
PspXI VCTCGAGB 1 cut(s) 36
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 2 cut(s) 949, 1029
RsaNI GTAC 2 cut(s) 948, 1028
RseI CAYNNNNRTG 3 cut(s) 212, 387, 393
SaqAI TTAA 3 cut(s) 14, 318, 566
SatI GCNGC 2 cut(s) 187, 447
Sau3AI GATC 5 cut(s) 286, 439, 459, 599, 862
Sau96I GGNCC 1 cut(s) 647
SchI GAGTC 2 cut(s) 58, 187
ScrFI CCNGG 1 cut(s) 660
SfaNI GCATC 4 cut(s) 16, 244, 415, 488
SfcI CTRYAG 1 cut(s) 447
Sfr274I CTCGAG 1 cut(s) 36
SlaI CTCGAG 1 cut(s) 36
SmiMI CAYNNNNRTG 3 cut(s) 212, 387, 393
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 6 cut(s) 201, 258, 788, 873, 905, 1023
SsiI CCGC 2 cut(s) 186, 845
SspI AATATT 3 cut(s) 350, 725, 806
SspMI CTAG 3 cut(s) 443, 971, 1020
StyD4I CCNGG 1 cut(s) 658
TaaI ACNGT 3 cut(s) 157, 323, 880
TaiI ACGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 37, 602
TaqII GACCGA 1 cut(s) 990
TasI AATT 6 cut(s) 201, 258, 788, 873, 905, 1023
TatI WGTACW 1 cut(s) 1027
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 1 cut(s) 664
Tru1I TTAA 3 cut(s) 14, 318, 566
Tru9I TTAA 3 cut(s) 14, 318, 566
TscAI CASTG 2 cut(s) 349, 715
TseFI GTSAC 2 cut(s) 620, 796
TseI GCWGC 1 cut(s) 446
Tsp45I GTSAC 2 cut(s) 620, 796
TspDTI ATGAA 9 cut(s) 17, 135, 149, 294, 536, 548, 620, 902, 907
TspGWI ACGGA 2 cut(s) 696, 701
TspRI CASTG 2 cut(s) 349, 715
XapI RAATTY 1 cut(s) 905
XcmI CCANNNNNNNNNTGG 1 cut(s) 533
XhoI CTCGAG 1 cut(s) 36
XmiI GTMKAC 2 cut(s) 152, 849
XspI CTAG 3 cut(s) 443, 971, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.