pycom09g05630

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012526
Physical Location & Seq
Reverse (-)
4180433 .. 4183907
3475 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g05630.4

Sequence Viewer

Length: 1059 bp
ATGAGGGTTAGACAAGCGTTAAAGAACCTGGATGCGTTTCCTCGGGCGGAGGAGCACTTGCTGCAGAAAACGCAATCCGGGGCACTTGTTTCTGTTGTTGGGCTGCTTATAATGGCGACATTGTTTGTGCACGAGCTCAGATATTATCTCACCACATACACCGTCCACCAGATGTCCGTAGACTTAAAGCGCGGAGAGACTCTTCCGATTCATATAAATATGACTTTTCCAGCTTTACCTTGTGATGTCTTGAGTGTTGATGCAATCGATATGTCAGGCAAGCATGAAGTAGATCTTGACACAAACATATGGAAACTTCGCCTGAACAGTCATGGCCACATCATCGGCACTGAATATTTGTCTGACCTTGTTGAAAAGGAGCATTCACACAAGCATGATGATGGCAAAGATAATCACGATGATAAGGACCAGGAAATTCATGCACAAGGAGCTTTTGATCAAGCTGCAGAAGATCTCATTAAGAGGGTAAAGCATGCAATAGCAAATGGAGAAGGATGCCGGGTTTTTGGTGTTTTAGATGTCCAAAGGGTTGCTGGAAACTTTCATATATCAGTTCATGGGTTAAACATTTTCGTTGCACAAATGATTTTCGGAGGATCTAAAAATGTAAATGTAAGCCACATCATTCATGACTTGTCGTTTGGCCCAAAATATCCAGGAATTCACAATCCACTTGATGGGACAGACCGTATTTTGCATGACACAAGTGGCACATTCAAATATTATATAAAGATTGTTCCAACTGAATATAGGTATATCTCAAAAGAAGTTTTGTCAACCAATCAGTTCTCTGTCACAGAATATTTTTCTCCTATGAAACAGTTTGATAGGTCATGGCCAGCTGTATACTTCTTGTATGATCTCTCAGCAATTACTGTAACTATCAAAGAAGAACGCCGCAGTTTTCTCCATTTCATCACTCGGCTTTGTGCTGTATTGGGTGGTACCTTTGCTTTGACAGGAATGCTAGATCGATGGATGTACAGGTTTGTTGAAGTATTGACGGCCAAACCAAAAGCTAGAAGTGTACTCCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

353

Amino Acids

40.05

Weight (kDa)

6.85

Isoelectric Point (pI)

37.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22290 AT3G22290
fragaria_vesca FvH4_6g40110 FvH4_6g40110 FvH4_6g40110 FvH4_6g40110
malus_domestica MD09G1135200.v1.1 MD17G1124200.v1.1
prunus_persica Prupe.3G191500_v2.0.a1
pyrus_communis pycom09g05630 pycom17g11560
rosa_chinensis RchiOBHm_Chr2g0154741
rosa_laevigata RLG00000020799
rosa_multiflora Rmu_sc0001027.1_g000004
rosa_roxburghii Rroxscaffold_2G00094140
rosa_rugosa Rorug02G0444800
rosa_samantha Rh2BG521200 Rh2CG495500
rosa_wichuraiana Rw2G041970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 110
Acc65I GGTACC 1 cut(s) 965
AccB1I GGYRCC 1 cut(s) 965
AccB7I CCANNNNNTGG 1 cut(s) 698
AccI GTMKAC 2 cut(s) 180, 867
AccII CGCG 1 cut(s) 192
AciI CCGC 3 cut(s) 47, 192, 919
AclWI GGATC 1 cut(s) 625
AcoI YGGCCR 3 cut(s) 334, 857, 1026
AcsI RAATTY 2 cut(s) 435, 681
AfaI GTAC 3 cut(s) 967, 1004, 1050
AfiI CCNNNNNNNGG 1 cut(s) 698
AgsI TTSAA 3 cut(s) 374, 739, 1016
AjnI CCWGG 3 cut(s) 27, 429, 676
AluBI AGCT 6 cut(s) 136, 233, 452, 464, 863, 1040
AluI AGCT 6 cut(s) 136, 233, 452, 464, 863, 1040
Alw21I GWGCWC 3 cut(s) 57, 132, 138
Alw26I GTCTC 1 cut(s) 191
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 1 cut(s) 625
Ama87I CYCGRG 1 cut(s) 42
AoxI GGCC 4 cut(s) 334, 664, 857, 1026
ApaLI GTGCAC 1 cut(s) 128
ApeKI GCWGC 3 cut(s) 61, 103, 464
ApoI RAATTY 2 cut(s) 435, 681
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
Asp718I GGTACC 1 cut(s) 965
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 2 cut(s) 427, 665
AsuC2I CCSGG 2 cut(s) 79, 521
AsuHPI GGTGA 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 42
AvaII GGWCC 1 cut(s) 427
BaeGI GKGCMC 2 cut(s) 85, 132
BalI TGGCCA 2 cut(s) 336, 859
BanI GGYRCC 1 cut(s) 965
BanII GRGCYC 1 cut(s) 138
BauI CACGAG 1 cut(s) 131
Bbv12I GWGCWC 3 cut(s) 57, 132, 138
BbvI GCAGC 3 cut(s) 48, 90, 451
BccI CCATC 3 cut(s) 395, 692, 990
BceAI ACGGC 1 cut(s) 1041
BciT130I CCWGG 3 cut(s) 29, 431, 678
BclI TGATCA 1 cut(s) 457
BcnI CCSGG 2 cut(s) 79, 521
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 2 cut(s) 989, 1041
BfmI CTRYAG 2 cut(s) 62, 465
BglII AGATCT 2 cut(s) 292, 472
BisI GCNGC 4 cut(s) 62, 104, 465, 919
BlsI GCNGC 4 cut(s) 63, 105, 466, 920
Bme1390I CCNGG 5 cut(s) 29, 79, 431, 521, 678
Bme18I GGWCC 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 42
BmgT120I GGNCC 2 cut(s) 427, 665
BmiI GGNNCC 1 cut(s) 967
BmrFI CCNGG 5 cut(s) 29, 79, 431, 521, 678
BmsI GCATC 3 cut(s) 22, 250, 506
BpuEI CTTGAG 1 cut(s) 271
BpuMI CCSGG 2 cut(s) 79, 521
Bsa29I ATCGAT 2 cut(s) 267, 994
BsaJI CCNNGG 2 cut(s) 41, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 698
BseBI CCWGG 3 cut(s) 29, 431, 678
BseCI ATCGAT 2 cut(s) 267, 994
BseDI CCNNGG 2 cut(s) 41, 78
BseGI GGATG 3 cut(s) 37, 521, 1005
BseLI CCNNNNNNNGG 1 cut(s) 698
BseMII CTCAG 2 cut(s) 151, 900
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 2 cut(s) 85, 132
BseXI GCAGC 3 cut(s) 48, 90, 451
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 4 cut(s) 336, 666, 859, 1028
BshNI GGYRCC 1 cut(s) 965
BshVI ATCGAT 2 cut(s) 267, 994
BsiHKAI GWGCWC 3 cut(s) 57, 132, 138
BsiHKCI CYCGRG 1 cut(s) 42
BsiSI CCGG 2 cut(s) 78, 520
BslFI GGGAC 1 cut(s) 715
BslI CCNNNNNNNGG 1 cut(s) 698
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 715
BsmI GAATGC 2 cut(s) 382, 990
BsnI GGCC 4 cut(s) 336, 666, 859, 1028
BsoBI CYCGRG 1 cut(s) 42
Bsp1286I GDGCHC 4 cut(s) 57, 85, 132, 138
Bsp1407I TGTACA 1 cut(s) 1002
Bsp143I GATC 6 cut(s) 292, 457, 472, 617, 880, 991
BspACI CCGC 3 cut(s) 47, 192, 919
BspANI GGCC 4 cut(s) 336, 666, 859, 1028
BspCNI CTCAG 2 cut(s) 150, 899
BspDI ATCGAT 2 cut(s) 267, 994
BspFNI CGCG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 649
BspLI GGNNCC 1 cut(s) 967
BspMAI CTGCAG 2 cut(s) 66, 469
BspPI GGATC 1 cut(s) 625
BspT107I GGYRCC 1 cut(s) 965
BsrGI TGTACA 1 cut(s) 1002
BssECI CCNNGG 2 cut(s) 41, 78
BssMI GATC 6 cut(s) 292, 457, 472, 617, 880, 991
BssNAI GTATAC 1 cut(s) 868
BssSI CACGAG 1 cut(s) 131
Bst1107I GTATAC 1 cut(s) 868
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 3 cut(s) 29, 431, 678
Bst4CI ACNGT 5 cut(s) 163, 329, 710, 843, 898
Bst6I CTCTTC 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 61
BstAUI TGTACA 1 cut(s) 1002
BstC8I GCNNGC 3 cut(s) 281, 495, 861
BstDEI CTNAG 2 cut(s) 137, 886
BstF5I GGATG 3 cut(s) 37, 521, 1005
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 6 cut(s) 295, 460, 475, 620, 883, 994
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 6 cut(s) 292, 457, 472, 617, 880, 991
BstMWI GCNNNNNNNGC 3 cut(s) 61, 70, 449
BstNI CCWGG 3 cut(s) 29, 431, 678
BstNSI RCATGY 1 cut(s) 497
BstSCI CCNGG 5 cut(s) 27, 77, 429, 519, 676
BstSFI CTRYAG 2 cut(s) 62, 465
BstSLI GKGCMC 2 cut(s) 85, 132
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 48, 90, 451
BstX2I RGATCY 3 cut(s) 292, 472, 617
BstYI RGATCY 3 cut(s) 292, 472, 617
BstZ17I GTATAC 1 cut(s) 868
Bsu15I ATCGAT 2 cut(s) 267, 994
BsuRI GGCC 4 cut(s) 336, 666, 859, 1028
BsuTUI ATCGAT 2 cut(s) 267, 994
BtsCI GGATG 3 cut(s) 37, 521, 1005
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 3 cut(s) 281, 495, 861
CciI TCATGA 1 cut(s) 649
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 2 cut(s) 427, 665
ClaI ATCGAT 2 cut(s) 267, 994
Csp6I GTAC 3 cut(s) 966, 1003, 1049
CviAII CATG 9 cut(s) 284, 332, 395, 440, 494, 578, 650, 719, 855
CviQI GTAC 3 cut(s) 966, 1003, 1049
DdeI CTNAG 2 cut(s) 137, 886
DpnI GATC 6 cut(s) 294, 459, 474, 619, 882, 993
DpnII GATC 6 cut(s) 292, 457, 472, 617, 880, 991
EaeI YGGCCR 3 cut(s) 334, 857, 1026
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
EciI GGCGGA 1 cut(s) 62
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 427
Eco53kI GAGCTC 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 681
EcoRII CCWGG 3 cut(s) 27, 429, 676
EcoT38I GRGCYC 1 cut(s) 138
FaeI CATG 9 cut(s) 287, 335, 398, 443, 497, 581, 653, 722, 858
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 1 cut(s) 715
FatI CATG 9 cut(s) 283, 331, 394, 439, 493, 577, 649, 718, 854
FauNDI CATATG 1 cut(s) 308
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 2 cut(s) 180, 867
Fnu4HI GCNGC 4 cut(s) 62, 104, 465, 919
FokI GGATG 3 cut(s) 44, 528, 1012
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 4 cut(s) 62, 104, 465, 919
FspBI CTAG 2 cut(s) 989, 1041
GlaI GCGC 1 cut(s) 191
GluI GCNGC 4 cut(s) 62, 104, 465, 919
HaeIII GGCC 4 cut(s) 336, 666, 859, 1028
HapII CCGG 2 cut(s) 78, 520
HhaI GCGC 1 cut(s) 192
Hin1II CATG 9 cut(s) 287, 335, 398, 443, 497, 581, 653, 722, 858
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 1 cut(s) 798
HindII GTYRAC 1 cut(s) 798
HinfI GANTC 2 cut(s) 199, 208
HpaII CCGG 2 cut(s) 78, 520
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 6 cut(s) 130, 166, 181, 798, 868, 1049
Hpy188I TCNGA 5 cut(s) 140, 207, 364, 614, 1055
Hpy188III TCNNGA 4 cut(s) 250, 296, 416, 650
Hpy8I GTNNAC 6 cut(s) 130, 166, 181, 798, 868, 1049
HpyAV CCTTC 1 cut(s) 506
HpyCH4III ACNGT 5 cut(s) 163, 329, 710, 843, 898
HpyCH4V TGCA 8 cut(s) 64, 130, 263, 443, 467, 497, 599, 718
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 70, 449
HpyF3I CTNAG 2 cut(s) 137, 886
Hsp92II CATG 9 cut(s) 287, 335, 398, 443, 497, 581, 653, 722, 858
HspAI GCGC 1 cut(s) 190
KpnI GGTACC 1 cut(s) 969
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 6 cut(s) 292, 457, 472, 617, 880, 991
LmnI GCTCC 3 cut(s) 52, 379, 449
Lsp1109I GCAGC 3 cut(s) 48, 90, 451
LweI GCATC 3 cut(s) 22, 250, 506
MaeI CTAG 2 cut(s) 989, 1041
MaeIII GTNAC 2 cut(s) 814, 898
MalI GATC 6 cut(s) 294, 459, 474, 619, 882, 993
MboI GATC 6 cut(s) 292, 457, 472, 617, 880, 991
MboII GAAGA 3 cut(s) 194, 482, 923
MflI RGATCY 3 cut(s) 292, 472, 617
MhlI GDGCHC 4 cut(s) 57, 85, 132, 138
MlsI TGGCCA 2 cut(s) 336, 859
MluCI AATT 3 cut(s) 435, 681, 891
MluNI TGGCCA 2 cut(s) 336, 859
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 785
MnlI CCTC 4 cut(s) 43, 51, 477, 608
Mox20I TGGCCA 2 cut(s) 336, 859
MscI TGGCCA 2 cut(s) 336, 859
MseI TTAA 4 cut(s) 20, 185, 480, 584
MslI CAYNNNNRTG 2 cut(s) 393, 399
Msp20I TGGCCA 2 cut(s) 336, 859
MspA1I CMGCKG 1 cut(s) 863
MspI CCGG 2 cut(s) 78, 520
MspR9I CCNGG 5 cut(s) 29, 79, 431, 521, 678
Mva1269I GAATGC 2 cut(s) 382, 990
MvaI CCWGG 3 cut(s) 29, 431, 678
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 3 cut(s) 61, 70, 449
NciI CCSGG 2 cut(s) 79, 521
NdeI CATATG 1 cut(s) 308
NdeII GATC 6 cut(s) 292, 457, 472, 617, 880, 991
NlaIII CATG 9 cut(s) 287, 335, 398, 443, 497, 581, 653, 722, 858
NlaIV GGNNCC 1 cut(s) 967
NmeAIII GCCGAG 1 cut(s) 922
NmuCI GTSAC 1 cut(s) 814
NspI RCATGY 1 cut(s) 497
PaeI GCATGC 1 cut(s) 497
PagI TCATGA 1 cut(s) 649
PctI GAATGC 2 cut(s) 382, 990
PfeI GAWTC 1 cut(s) 208
PflMI CCANNNNNTGG 1 cut(s) 698
PfoI TCCNGGA 1 cut(s) 676
PkrI GCNGC 4 cut(s) 63, 105, 466, 920
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PsiI TTATAA 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 3 cut(s) 27, 429, 676
PspGI CCWGG 3 cut(s) 27, 429, 676
PspN4I GGNNCC 1 cut(s) 967
PspPI GGNCC 2 cut(s) 427, 665
PstI CTGCAG 2 cut(s) 66, 469
PsuI RGATCY 3 cut(s) 292, 472, 617
PvuII CAGCTG 1 cut(s) 863
RsaI GTAC 3 cut(s) 967, 1004, 1050
RsaNI GTAC 3 cut(s) 966, 1003, 1049
RseI CAYNNNNRTG 2 cut(s) 393, 399
SacI GAGCTC 1 cut(s) 138
SaqAI TTAA 4 cut(s) 20, 185, 480, 584
SatI GCNGC 4 cut(s) 62, 104, 465, 919
Sau3AI GATC 6 cut(s) 292, 457, 472, 617, 880, 991
Sau96I GGNCC 2 cut(s) 427, 665
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 5 cut(s) 29, 79, 431, 521, 678
SduI GDGCHC 4 cut(s) 57, 85, 132, 138
SfaNI GCATC 3 cut(s) 22, 250, 506
SfcI CTRYAG 2 cut(s) 62, 465
SinI GGWCC 1 cut(s) 427
SmiMI CAYNNNNRTG 2 cut(s) 393, 399
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
SphI GCATGC 1 cut(s) 497
Sse9I AATT 3 cut(s) 435, 681, 891
SsiI CCGC 3 cut(s) 47, 192, 919
SspI AATATT 3 cut(s) 356, 743, 824
SspMI CTAG 2 cut(s) 989, 1041
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 5 cut(s) 27, 77, 429, 519, 676
TaaI ACNGT 5 cut(s) 163, 329, 710, 843, 898
TaqI TCGA 2 cut(s) 267, 994
TasI AATT 3 cut(s) 435, 681, 891
TatI WGTACW 2 cut(s) 1002, 1048
TauI GCSGC 1 cut(s) 921
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 4 cut(s) 20, 185, 480, 584
Tru9I TTAA 4 cut(s) 20, 185, 480, 584
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 814
TseI GCWGC 3 cut(s) 61, 103, 464
Tsp45I GTSAC 1 cut(s) 814
TspDTI ATGAA 8 cut(s) 200, 300, 428, 554, 566, 638, 851, 925
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 1 cut(s) 355
Van91I CCANNNNNTGG 1 cut(s) 698
VneI GTGCAC 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 427
XapI RAATTY 2 cut(s) 435, 681
XceI RCATGY 1 cut(s) 497
XcmI CCANNNNNNNNNTGG 1 cut(s) 551
XmiI GTMKAC 2 cut(s) 180, 867
XspI CTAG 2 cut(s) 989, 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.