Prupe.3G191500_v2.0.a1

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012526
Physical Location & Seq
Forward (+)
20402091 .. 20407656
5566 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G191500.1

Sequence Viewer

Length: 1056 bp
ATGGGCGTGAAACAAGCCTTGAAGAGCTTGGATGCATTTCCTCGTGCCGAAGAGCACTTGTTGCAGAAAACACAAACTGGGGCAGTTGTTTCTGTTGTTGGTCTACTTATAATGGCGACATTGTTTGTGCACGAGCTGAGATATTATCTTACCACATATACCGTCCATCAGATGTCCGTAGACTTGAAGCGTGGAGAGACTCTTCCAATTCACATAAATATCACATTTCCATCTTTACCTTGTGATGTTTTGAGTGTGGATGCGATTGATATGTCAGGAAAGCATGAAGTGGATCTTGACACAAACATATGGAAACTTCGCCTGAACAGTTATGGCCACATCATCGGCACTGAATATTTGTCTGACCTTGTGGAAAGGGAACATTCTCACAAGCATGATGACAGTAAAGATCATCATGAGGACAAGGACCAGGAAATTCATTTACAAGGAGCTTTTGATCAAGCTGCAGAAGATCTCATCAAGAGGGTAAAGCATGCAATAGCAAATGGAGAAGGATGCCAGGTTTTTGGTGTTTTAGATGTCCAAAGGGTTGCTGGAAACTTTCACATTTCAGTTCATGGATTAAACATTTTCGTTGCACAAATGATTTTTGAAGGATCTAAAAATGTAAATATAAGCCATATCATTCATGACTTGTCATTTGGCCCAAAATATCCAGGGATTCACAATCCACTTGATGGGACGGAGCGTATTTTGCATGACACAAGTGGCACTTTCAAATATTATATAAAGGTTGTTCCAACCGAATATAGGTATATCTCAAAAGAAGTTTTGCCAACCAATCAATTCTCTGTCACAGAATATTTTTCTCCTATGAAGCAGTTTGATAGGACATGGCCAGCTGTATACTTCTTGTATGATCTGTCGCCAATCACTGTAACTATCAAAGAAGAACGCCGCAGTTTTCTCCATTTCATCACTCGGCTTTGTGCTGTATTGGGCGGTACCTTTGCTTTGACAGGAATGCTAGATCGATGGATGTACAGGTTTCTTGAAGCAGTGACCAAACCAAATGCTAGAAGTGTACTCCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

352

Amino Acids

40.05

Weight (kDa)

6.36

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22290 AT3G22290
fragaria_vesca FvH4_6g40110 FvH4_6g40110 FvH4_6g40110 FvH4_6g40110
malus_domestica MD09G1135200.v1.1 MD17G1124200.v1.1
prunus_persica Prupe.3G191500_v2.0.a1
pyrus_communis pycom09g05630 pycom17g11560
rosa_chinensis RchiOBHm_Chr2g0154741
rosa_laevigata RLG00000020799
rosa_multiflora Rmu_sc0001027.1_g000004
rosa_roxburghii Rroxscaffold_2G00094140
rosa_rugosa Rorug02G0444800
rosa_samantha Rh2BG521200 Rh2CG495500
rosa_wichuraiana Rw2G041970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 110
Acc65I GGTACC 1 cut(s) 965
AccB1I GGYRCC 1 cut(s) 965
AccB7I CCANNNNNTGG 1 cut(s) 698
AccI GTMKAC 3 cut(s) 103, 180, 867
AciI CCGC 2 cut(s) 919, 963
AclWI GGATC 2 cut(s) 300, 625
AcoI YGGCCR 2 cut(s) 334, 857
AcsI RAATTY 1 cut(s) 435
AfaI GTAC 3 cut(s) 967, 1004, 1047
AfiI CCNNNNNNNGG 2 cut(s) 698, 771
AgsI TTSAA 5 cut(s) 22, 187, 614, 739, 1016
AjnI CCWGG 3 cut(s) 429, 519, 676
AluBI AGCT 5 cut(s) 27, 136, 452, 464, 863
AluI AGCT 5 cut(s) 27, 136, 452, 464, 863
Alw21I GWGCWC 2 cut(s) 57, 132
Alw26I GTCTC 1 cut(s) 191
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 2 cut(s) 300, 625
AoxI GGCC 3 cut(s) 334, 664, 857
ApaLI GTGCAC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 1 cut(s) 435
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
Asp718I GGTACC 1 cut(s) 965
AspS9I GGNCC 2 cut(s) 427, 665
AvaII GGWCC 1 cut(s) 427
BaeGI GKGCMC 1 cut(s) 132
BalI TGGCCA 2 cut(s) 336, 859
BanI GGYRCC 1 cut(s) 965
BauI CACGAG 2 cut(s) 42, 131
Bbv12I GWGCWC 2 cut(s) 57, 132
BbvI GCAGC 1 cut(s) 451
BccI CCATC 4 cut(s) 174, 238, 692, 990
BciT130I CCWGG 3 cut(s) 431, 521, 678
BclI TGATCA 1 cut(s) 457
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 2 cut(s) 989, 1038
BfmI CTRYAG 1 cut(s) 465
BglII AGATCT 1 cut(s) 472
BisI GCNGC 2 cut(s) 465, 919
BlsI GCNGC 2 cut(s) 466, 920
Bme1390I CCNGG 3 cut(s) 431, 521, 678
Bme18I GGWCC 1 cut(s) 427
BmgT120I GGNCC 2 cut(s) 427, 665
BmiI GGNNCC 1 cut(s) 967
BmrFI CCNGG 3 cut(s) 431, 521, 678
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 3 cut(s) 22, 250, 506
BmuI ACTGGG 1 cut(s) 87
Bsa29I ATCGAT 1 cut(s) 994
BsaJI CCNNGG 1 cut(s) 677
Bsc4I CCNNNNNNNGG 2 cut(s) 698, 771
Bse1I ACTGG 1 cut(s) 82
BseBI CCWGG 3 cut(s) 431, 521, 678
BseCI ATCGAT 1 cut(s) 994
BseDI CCNNGG 1 cut(s) 677
BseGI GGATG 4 cut(s) 37, 265, 521, 1005
BseLI CCNNNNNNNGG 2 cut(s) 698, 771
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 82
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 1 cut(s) 451
BshFI GGCC 3 cut(s) 336, 666, 859
BshNI GGYRCC 1 cut(s) 965
BshVI ATCGAT 1 cut(s) 994
BsiHKAI GWGCWC 2 cut(s) 57, 132
BslFI GGGAC 1 cut(s) 715
BslI CCNNNNNNNGG 2 cut(s) 698, 771
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 715
BsmI GAATGC 1 cut(s) 990
BsnI GGCC 3 cut(s) 336, 666, 859
Bsp1286I GDGCHC 2 cut(s) 57, 132
Bsp1407I TGTACA 1 cut(s) 1002
Bsp143I GATC 7 cut(s) 292, 409, 457, 472, 617, 880, 991
BspACI CCGC 2 cut(s) 919, 963
BspANI GGCC 3 cut(s) 336, 666, 859
BspCNI CTCAG 1 cut(s) 129
BspDI ATCGAT 1 cut(s) 994
BspHI TCATGA 2 cut(s) 415, 649
BspLI GGNNCC 1 cut(s) 967
BspMAI CTGCAG 1 cut(s) 469
BspPI GGATC 2 cut(s) 300, 625
BspQI GCTCTTC 2 cut(s) 17, 45
BspT107I GGYRCC 1 cut(s) 965
BsrGI TGTACA 1 cut(s) 1002
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 677
BssMI GATC 7 cut(s) 292, 409, 457, 472, 617, 880, 991
BssNAI GTATAC 1 cut(s) 868
BssSI CACGAG 2 cut(s) 42, 131
Bst1107I GTATAC 1 cut(s) 868
Bst2BI CACGAG 2 cut(s) 42, 131
Bst2UI CCWGG 3 cut(s) 431, 521, 678
Bst4CI ACNGT 4 cut(s) 163, 329, 404, 898
Bst6I CTCTTC 3 cut(s) 17, 45, 207
BstAPI GCANNNNNTGC 1 cut(s) 61
BstAUI TGTACA 1 cut(s) 1002
BstC8I GCNNGC 2 cut(s) 495, 861
BstDEI CTNAG 1 cut(s) 137
BstF5I GGATG 4 cut(s) 37, 265, 521, 1005
BstKTI GATC 7 cut(s) 295, 412, 460, 475, 620, 883, 994
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 7 cut(s) 292, 409, 457, 472, 617, 880, 991
BstMWI GCNNNNNNNGC 2 cut(s) 61, 715
BstNI CCWGG 3 cut(s) 431, 521, 678
BstNSI RCATGY 1 cut(s) 497
BstSCI CCNGG 3 cut(s) 429, 519, 676
BstSFI CTRYAG 1 cut(s) 465
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 451
BstX2I RGATCY 3 cut(s) 292, 472, 617
BstXI CCANNNNNNTGG 1 cut(s) 527
BstYI RGATCY 3 cut(s) 292, 472, 617
BstZ17I GTATAC 1 cut(s) 868
Bsu15I ATCGAT 1 cut(s) 994
BsuRI GGCC 3 cut(s) 336, 666, 859
BsuTUI ATCGAT 1 cut(s) 994
BtsCI GGATG 4 cut(s) 37, 265, 521, 1005
BtsI GCAGTG 1 cut(s) 1026
BtsIMutI CAGTG 3 cut(s) 348, 894, 1026
Cac8I GCNNGC 2 cut(s) 495, 861
CciI TCATGA 2 cut(s) 415, 649
Cfr13I GGNCC 2 cut(s) 427, 665
ClaI ATCGAT 1 cut(s) 994
Csp6I GTAC 3 cut(s) 966, 1003, 1046
CviAII CATG 8 cut(s) 284, 395, 416, 494, 578, 650, 719, 855
CviQI GTAC 3 cut(s) 966, 1003, 1046
DdeI CTNAG 1 cut(s) 137
DpnI GATC 7 cut(s) 294, 411, 459, 474, 619, 882, 993
DpnII GATC 7 cut(s) 292, 409, 457, 472, 617, 880, 991
EaeI YGGCCR 2 cut(s) 334, 857
Eam1104I CTCTTC 3 cut(s) 17, 45, 207
EarI CTCTTC 3 cut(s) 17, 45, 207
Eco47I GGWCC 1 cut(s) 427
EcoRII CCWGG 3 cut(s) 429, 519, 676
EcoT22I ATGCAT 1 cut(s) 37
FaeI CATG 8 cut(s) 287, 398, 419, 497, 581, 653, 722, 858
FalI AAGNNNNNCTT 4 cut(s) 279, 311, 718, 750
FaqI GGGAC 1 cut(s) 715
FatI CATG 8 cut(s) 283, 394, 415, 493, 577, 649, 718, 854
FauNDI CATATG 1 cut(s) 308
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 3 cut(s) 103, 180, 867
Fnu4HI GCNGC 2 cut(s) 465, 919
FokI GGATG 4 cut(s) 44, 272, 528, 1012
Fsp4HI GCNGC 2 cut(s) 465, 919
FspBI CTAG 2 cut(s) 989, 1038
GluI GCNGC 2 cut(s) 465, 919
HaeIII GGCC 3 cut(s) 336, 666, 859
Hin1II CATG 8 cut(s) 287, 398, 419, 497, 581, 653, 722, 858
HinfI GANTC 2 cut(s) 199, 682
Hpy166II GTNNAC 5 cut(s) 104, 130, 181, 868, 1046
Hpy188I TCNGA 3 cut(s) 171, 364, 1052
Hpy188III TCNNGA 6 cut(s) 276, 296, 416, 481, 650, 1013
Hpy8I GTNNAC 5 cut(s) 104, 130, 181, 868, 1046
HpyAV CCTTC 2 cut(s) 506, 608
HpyCH4III ACNGT 4 cut(s) 163, 329, 404, 898
HpyCH4V TGCA 7 cut(s) 35, 64, 130, 467, 497, 599, 718
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 715
HpyF3I CTNAG 1 cut(s) 137
Hsp92II CATG 8 cut(s) 287, 398, 419, 497, 581, 653, 722, 858
KpnI GGTACC 1 cut(s) 969
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 7 cut(s) 292, 409, 457, 472, 617, 880, 991
LguI GCTCTTC 2 cut(s) 17, 45
LmnI GCTCC 2 cut(s) 449, 706
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 3 cut(s) 22, 250, 506
MaeI CTAG 2 cut(s) 989, 1038
MaeIII GTNAC 3 cut(s) 814, 898, 1021
MalI GATC 7 cut(s) 294, 411, 459, 474, 619, 882, 993
MboI GATC 7 cut(s) 292, 409, 457, 472, 617, 880, 991
MboII GAAGA 5 cut(s) 34, 62, 194, 482, 923
MflI RGATCY 3 cut(s) 292, 472, 617
MhlI GDGCHC 2 cut(s) 57, 132
MlsI TGGCCA 2 cut(s) 336, 859
MluCI AATT 3 cut(s) 207, 435, 806
MluNI TGGCCA 2 cut(s) 336, 859
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 785
MnlI CCTC 3 cut(s) 51, 412, 477
Mox20I TGGCCA 2 cut(s) 336, 859
Mph1103I ATGCAT 1 cut(s) 37
MscI TGGCCA 2 cut(s) 336, 859
MseI TTAA 1 cut(s) 584
MslI CAYNNNNRTG 1 cut(s) 393
Msp20I TGGCCA 2 cut(s) 336, 859
MspA1I CMGCKG 1 cut(s) 863
MspR9I CCNGG 3 cut(s) 431, 521, 678
Mva1269I GAATGC 1 cut(s) 990
MvaI CCWGG 3 cut(s) 431, 521, 678
MwoI GCNNNNNNNGC 2 cut(s) 61, 715
NdeI CATATG 1 cut(s) 308
NdeII GATC 7 cut(s) 292, 409, 457, 472, 617, 880, 991
NlaIII CATG 8 cut(s) 287, 398, 419, 497, 581, 653, 722, 858
NlaIV GGNNCC 1 cut(s) 967
NmeAIII GCCGAG 1 cut(s) 922
NmuCI GTSAC 2 cut(s) 814, 1021
NsiI ATGCAT 1 cut(s) 37
NspI RCATGY 1 cut(s) 497
PaeI GCATGC 1 cut(s) 497
PagI TCATGA 2 cut(s) 415, 649
PciSI GCTCTTC 2 cut(s) 17, 45
PctI GAATGC 1 cut(s) 990
PfeI GAWTC 1 cut(s) 682
PflMI CCANNNNNTGG 1 cut(s) 698
PkrI GCNGC 2 cut(s) 466, 920
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PsiI TTATAA 1 cut(s) 110
Psp6I CCWGG 3 cut(s) 429, 519, 676
PspGI CCWGG 3 cut(s) 429, 519, 676
PspN4I GGNNCC 1 cut(s) 967
PspPI GGNCC 2 cut(s) 427, 665
PstI CTGCAG 1 cut(s) 469
PsuI RGATCY 3 cut(s) 292, 472, 617
PvuII CAGCTG 1 cut(s) 863
RsaI GTAC 3 cut(s) 967, 1004, 1047
RsaNI GTAC 3 cut(s) 966, 1003, 1046
RseI CAYNNNNRTG 1 cut(s) 393
SapI GCTCTTC 2 cut(s) 17, 45
SaqAI TTAA 1 cut(s) 584
SatI GCNGC 2 cut(s) 465, 919
Sau3AI GATC 7 cut(s) 292, 409, 457, 472, 617, 880, 991
Sau96I GGNCC 2 cut(s) 427, 665
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 3 cut(s) 431, 521, 678
SduI GDGCHC 2 cut(s) 57, 132
SfaNI GCATC 3 cut(s) 22, 250, 506
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 393
SphI GCATGC 1 cut(s) 497
Sse9I AATT 3 cut(s) 207, 435, 806
SsiI CCGC 2 cut(s) 919, 963
SspI AATATT 3 cut(s) 356, 743, 824
SspMI CTAG 2 cut(s) 989, 1038
StyD4I CCNGG 3 cut(s) 429, 519, 676
TaaI ACNGT 4 cut(s) 163, 329, 404, 898
TaqI TCGA 1 cut(s) 994
TasI AATT 3 cut(s) 207, 435, 806
TatI WGTACW 2 cut(s) 1002, 1045
TauI GCSGC 1 cut(s) 921
TfiI GAWTC 1 cut(s) 682
Tru1I TTAA 1 cut(s) 584
Tru9I TTAA 1 cut(s) 584
TscAI CASTG 3 cut(s) 355, 901, 1026
TseFI GTSAC 2 cut(s) 814, 1021
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 2 cut(s) 814, 1021
TspDTI ATGAA 6 cut(s) 300, 428, 566, 638, 851, 925
TspGWI ACGGA 2 cut(s) 166, 719
TspRI CASTG 3 cut(s) 355, 901, 1026
Van91I CCANNNNNTGG 1 cut(s) 698
VneI GTGCAC 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 427
XapI RAATTY 1 cut(s) 435
XceI RCATGY 1 cut(s) 497
XcmI CCANNNNNNNNNTGG 1 cut(s) 551
XmiI GTMKAC 3 cut(s) 103, 180, 867
XspI CTAG 2 cut(s) 989, 1038
Zsp2I ATGCAT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.