FvH4_6g40584

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
32062103 .. 32065597
3495 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40584.t1

Sequence Viewer

Length: 1752 bp
ATGGCTTTACGCTTGGGGCATTGTTCTTCTTTTCTTGAAACCAGTTGTTTCAAGCATGAGGCTTTGCAAACAAAGAGGTTCTTGAGCAGTTGGGGTTTTCAGAAAACTTCAAGCGTTCAACACATGCATTTCGAGATCAGAGCTTCGGCTTCCAATGTGCAACCGCTTAATGCTGCTTCTTTGCAGGCTGGTCCAACAGAAAATGTCTTGGATGCTGAACTTGTCGAAACTCCAGTTAATGAGGGGTTCAGTCCATTCTTGGAAACAGATGAGAAGGACAAGCCTACTCTCAGCATTGTAGTTGTAGGGGCTTCTGGGGATCTTGCAAGAAAGAAGATATTCCCAGCTCTTTTTGCTCTTTTTTACGATGATCATCTACCTCAGAATTTTACAATCTATGGCTATGCTCGGAGTGTGATGACTGACATGGAGTTAAGGAATGTAATTAGCAGAACCTTGACATGCAGAATAGATAAGAGGGAAAATTGCGAGGAAAAGATGAATCACTTCTTAAAGAGATGCTTTTACCATTCGGGTCAGTACAGCTCGGAGGAGCACTTTTTAGAGTTGGACAGCAAGCTGAGGGAGAAAGAGGCTGGAAGAAAATCAAATAGGCTGTTTTACTTGGCAATACCCCCAGATGTGTTTGTGGATGCAACTAGATGTGCCAAACATCGTGCTTCTTCAGAAAATGGATGGACTCGTGTCATTGTTGAAAAACCATTTGGTCGTGATACAGAGTCATCCAGAGAGCTGACTAGAACTTTAAAGCAGTATCTAACTGAGGATCAAATATTCAGAATTGACCATCAGTTGGGTGAGGAACTGGTAGAAAATCTCTTGGTACTTCGTTTCTCAAACCTGGTTTTCGAGCCTTTGTGGTCCAGGAACTACATCCGCAGTGTACAGCTAATTTTTTCTGAAGATTTTGGGGTAGAAGGGAGAGGCAGATACTTTGAAAACTATGGTATCATCCGGGATATAATGCAAAACCATCTCCTCCAAATATTGTCACTGTTTGCAATGGACACTCCTGTCAGCTTAGATGCTGAAGATATAAGGAATGAAAAGGTTAAGGTTTTACGTTCCATTAAACCTGTTGAGCTCAAAGATGTTGTCGTGGGTCAATATAAGCGCCATTGCGAGGGGAATGTTTGCTATCCTGCTTATACTGATGATCCAACTGTTTCAAATGATAGCCTCACACCAACTTTCGCAGCCGCTACAATGTTTATTAATAATTCACGGTGGGATGGAGTTCCAATCATGCTGATAGCTGGCAAAGCCCTTCAGTCAAAGAGAGCGGAAATAAGAGTTCAGTTCAGACATGTCCCGGGAAACTTGTATAACCGGAACTCTGGAACGGACTTAGACAAGGCTACTAATGAACTCGTGCTTCGTATACAACCTGAAGAAGCTGTCTATTTAAAGGTGAACAACAAGGTTCCTGGACTTGGAATGAGGCTGGACCGTAGTGATCTTAATTTGCTGTATAAATCAAGGTATCCAAGAGAGTTCCCAGATGCATATGAGAGGCTGCTATTAGATGCAATGAAAGGAGAGCGACGATCATTTATTAGAAGCGATGAGCTTGAAGCAGCTTGGGCAGTATTCACTCCATTGTTGAAGGAACTGGAAGAGAAGAAGGTTGTGCCAGAGCTGTACAGCTATGGTAGTAGTGGACCTGTCGGAGTGCATTATCTTGCTGCAGAGCACAATGTTACATTAGGAGATTTTGGTTACGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

584

Amino Acids

66.81

Weight (kDa)

6.08

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G6PD_N PF00479 100 - 279 2e-56 Glucose-6-phosphate dehydrogenase, NAD binding domain
G6PD_C PF02781 281 - 573 2.5e-108 Glucose-6-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1034
AccB7I CCANNNNNTGG 1 cut(s) 814
AccBSI CCGCTC 1 cut(s) 1304
AccI GTMKAC 1 cut(s) 1402
AciI CCGC 4 cut(s) 164, 898, 1221, 1304
AclWI GGATC 3 cut(s) 327, 795, 1172
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 5 cut(s) 669, 942, 1071, 1274, 1431
AfaI GTAC 4 cut(s) 542, 846, 906, 1664
AfiI CCNNNNNNNGG 3 cut(s) 814, 1144, 1454
AflIII ACRYGT 1 cut(s) 1327
AgsI TTSAA 9 cut(s) 38, 52, 111, 119, 716, 959, 1191, 1595, 1627
AjnI CCWGG 3 cut(s) 861, 884, 1447
AjuI GAANNNNNNNTTGG 2 cut(s) 708, 740
Alw21I GWGCWC 3 cut(s) 558, 1107, 1716
AlwI GGATC 3 cut(s) 327, 795, 1172
Ama87I CYCGRG 1 cut(s) 1333
ApeKI GCWGC 5 cut(s) 173, 1217, 1537, 1598, 1706
ApoI RAATTY 1 cut(s) 385
ArsI GACNNNNNNTTYG 2 cut(s) 1101, 1133
AseI ATTAAT 1 cut(s) 1236
Asp700I GAANNNNTTC 2 cut(s) 338, 506
AspLEI GCGC 1 cut(s) 1137
AspS9I GGNCC 4 cut(s) 191, 882, 1468, 1682
AsuC2I CCSGG 3 cut(s) 977, 1334, 1335
AsuHPI GGTGA 2 cut(s) 830, 1444
AvaI CYCGRG 1 cut(s) 1333
AvaII GGWCC 4 cut(s) 191, 882, 1468, 1682
BaeI ACNNNNGTAYC 2 cut(s) 952, 985
BanII GRGCYC 1 cut(s) 1107
BauI CACGAG 2 cut(s) 702, 1391
Bbv12I GWGCWC 3 cut(s) 558, 1107, 1716
BbvCI CCTCAGC 1 cut(s) 581
BbvI GCAGC 5 cut(s) 160, 1229, 1524, 1610, 1693
BccI CCATC 4 cut(s) 690, 816, 1002, 1247
BciT130I CCWGG 3 cut(s) 863, 886, 1449
BciVI GTATCC 1 cut(s) 1515
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 3 cut(s) 977, 1334, 1335
BfaI CTAG 2 cut(s) 660, 759
BfmI CTRYAG 1 cut(s) 1707
BfoI RGCGCY 1 cut(s) 1138
BfuI GTATCC 1 cut(s) 1515
BisI GCNGC 6 cut(s) 174, 1218, 1221, 1538, 1599, 1707
BlsI GCNGC 6 cut(s) 175, 1219, 1222, 1539, 1600, 1708
Bme1390I CCNGG 6 cut(s) 863, 886, 977, 1334, 1335, 1449
Bme18I GGWCC 4 cut(s) 191, 882, 1468, 1682
BmeT110I CYCGRG 1 cut(s) 1333
BmgT120I GGNCC 4 cut(s) 191, 882, 1468, 1682
BmiI GGNNCC 1 cut(s) 1446
BmrFI CCNGG 6 cut(s) 863, 886, 977, 1334, 1335, 1449
BmsI GCATC 6 cut(s) 202, 509, 643, 1036, 1513, 1537
BoxI GACNNNNGTC 1 cut(s) 704
BpmI CTGGAG 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 581
BpuEI CTTGAG 1 cut(s) 103
BpuMI CCSGG 3 cut(s) 977, 1334, 1335
BsaBI GATNNNNATC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 1333
BsaWI WCCGGW 1 cut(s) 1350
Bsc4I CCNNNNNNNGG 3 cut(s) 814, 1144, 1454
Bse1I ACTGG 4 cut(s) 42, 233, 831, 1638
Bse3DI GCAATG 3 cut(s) 1029, 1138, 1557
Bse8I GATNNNNATC 1 cut(s) 372
BseBI CCWGG 3 cut(s) 863, 886, 1449
BseDI CCNNGG 1 cut(s) 1333
BseGI GGATG 7 cut(s) 217, 658, 701, 743, 894, 972, 1258
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 3 cut(s) 814, 1144, 1454
BseMI GCAATG 3 cut(s) 1029, 1138, 1557
BseMII CTCAG 4 cut(s) 304, 395, 572, 774
BseNI ACTGG 4 cut(s) 42, 233, 831, 1638
BseRI GAGGAG 2 cut(s) 566, 989
BseXI GCAGC 5 cut(s) 160, 1229, 1524, 1610, 1693
BseYI CCCAGC 1 cut(s) 343
BsiHKAI GWGCWC 3 cut(s) 558, 1107, 1716
BsiHKCI CYCGRG 1 cut(s) 1333
BsiSI CCGG 3 cut(s) 976, 1334, 1351
BslFI GGGAC 1 cut(s) 1316
BslI CCNNNNNNNGG 3 cut(s) 814, 1144, 1454
BsmFI GGGAC 1 cut(s) 1316
BsoBI CYCGRG 1 cut(s) 1333
Bsp1286I GDGCHC 3 cut(s) 558, 1107, 1716
Bsp1407I TGTACA 2 cut(s) 904, 1662
Bsp143I GATC 7 cut(s) 135, 319, 370, 787, 1177, 1477, 1568
BspACI CCGC 4 cut(s) 164, 898, 1221, 1304
BspCNI CTCAG 4 cut(s) 303, 394, 573, 775
BspLI GGNNCC 1 cut(s) 1446
BspMAI CTGCAG 1 cut(s) 1711
BspPI GGATC 3 cut(s) 327, 795, 1172
BsrBI CCGCTC 1 cut(s) 1304
BsrDI GCAATG 3 cut(s) 1029, 1138, 1557
BsrGI TGTACA 2 cut(s) 904, 1662
BsrI ACTGG 4 cut(s) 42, 233, 831, 1638
BssECI CCNNGG 1 cut(s) 1333
BssMI GATC 7 cut(s) 135, 319, 370, 787, 1177, 1477, 1568
BssNAI GTATAC 1 cut(s) 1403
BssSI CACGAG 2 cut(s) 702, 1391
Bst1107I GTATAC 1 cut(s) 1403
Bst2BI CACGAG 2 cut(s) 702, 1391
Bst2UI CCWGG 3 cut(s) 863, 886, 1449
Bst4CI ACNGT 4 cut(s) 1017, 1186, 1248, 1472
Bst6I CTCTTC 1 cut(s) 1632
BstAUI TGTACA 2 cut(s) 904, 1662
BstC8I GCNNGC 3 cut(s) 186, 578, 1279
BstDEI CTNAG 6 cut(s) 290, 381, 581, 783, 1042, 1369
BstF5I GGATG 7 cut(s) 217, 658, 701, 743, 894, 972, 1258
BstH2I RGCGCY 1 cut(s) 1138
BstHHI GCGC 1 cut(s) 1137
BstKTI GATC 7 cut(s) 138, 322, 373, 790, 1180, 1480, 1571
BstMBI GATC 7 cut(s) 135, 319, 370, 787, 1177, 1477, 1568
BstMWI GCNNNNNNNGC 3 cut(s) 353, 1283, 1604
BstNI CCWGG 3 cut(s) 863, 886, 1449
BstNSI RCATGY 3 cut(s) 127, 465, 1331
BstPAI GACNNNNGTC 1 cut(s) 704
BstSCI CCNGG 6 cut(s) 861, 884, 975, 1332, 1333, 1447
BstSFI CTRYAG 1 cut(s) 1707
BstV1I GCAGC 5 cut(s) 160, 1229, 1524, 1610, 1693
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BstZ17I GTATAC 1 cut(s) 1403
BsuI GTATCC 1 cut(s) 1515
BtgZI GCGATG 1 cut(s) 1599
BtsCI GGATG 7 cut(s) 217, 658, 701, 743, 894, 972, 1258
BtsI GCAGTG 1 cut(s) 907
BtsIMutI CAGTG 2 cut(s) 907, 1013
Cac8I GCNNGC 3 cut(s) 186, 578, 1279
CfoI GCGC 1 cut(s) 1137
Cfr13I GGNCC 4 cut(s) 191, 882, 1468, 1682
Cfr9I CCCGGG 1 cut(s) 1333
CsiI ACCWGGT 1 cut(s) 861
Csp6I GTAC 4 cut(s) 541, 845, 905, 1663
CviAII CATG 6 cut(s) 56, 124, 427, 462, 1267, 1328
CviQI GTAC 4 cut(s) 541, 845, 905, 1663
DdeI CTNAG 6 cut(s) 290, 381, 581, 783, 1042, 1369
DpnI GATC 7 cut(s) 137, 321, 372, 789, 1179, 1479, 1570
DpnII GATC 7 cut(s) 135, 319, 370, 787, 1177, 1477, 1568
DraI TTTAAA 2 cut(s) 768, 1428
DrdI GACNNNNNNGTC 1 cut(s) 1034
DseDI GACNNNNNNGTC 1 cut(s) 1034
Eam1104I CTCTTC 1 cut(s) 1632
EarI CTCTTC 1 cut(s) 1632
Ecl136II GAGCTC 1 cut(s) 1105
Eco24I GRGCYC 1 cut(s) 1107
Eco47I GGWCC 4 cut(s) 191, 882, 1468, 1682
Eco53kI GAGCTC 1 cut(s) 1105
Eco57I CTGAAG 5 cut(s) 669, 942, 1071, 1274, 1431
Eco88I CYCGRG 1 cut(s) 1333
EcoICRI GAGCTC 1 cut(s) 1105
EcoRII CCWGG 3 cut(s) 861, 884, 1447
EcoT22I ATGCAT 2 cut(s) 129, 1528
EcoT38I GRGCYC 1 cut(s) 1107
FaeI CATG 6 cut(s) 59, 127, 430, 465, 1270, 1331
FalI AAGNNNNNCTT 4 cut(s) 65, 97, 506, 538
FaqI GGGAC 1 cut(s) 1316
FatI CATG 6 cut(s) 55, 123, 426, 461, 1266, 1327
FauNDI CATATG 1 cut(s) 1528
FbaI TGATCA 1 cut(s) 370
FblI GTMKAC 1 cut(s) 1402
Fnu4HI GCNGC 6 cut(s) 174, 1218, 1221, 1538, 1599, 1707
FokI GGATG 7 cut(s) 224, 665, 708, 730, 881, 959, 1265
FriOI GRGCYC 1 cut(s) 1107
Fsp4HI GCNGC 6 cut(s) 174, 1218, 1221, 1538, 1599, 1707
FspBI CTAG 2 cut(s) 660, 759
GlaI GCGC 1 cut(s) 1136
GluI GCNGC 6 cut(s) 174, 1218, 1221, 1538, 1599, 1707
GsaI CCCAGC 1 cut(s) 347
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 1138
HapII CCGG 3 cut(s) 976, 1334, 1351
HhaI GCGC 1 cut(s) 1137
Hin1II CATG 6 cut(s) 59, 127, 430, 465, 1270, 1331
Hin6I GCGC 1 cut(s) 1135
HinP1I GCGC 1 cut(s) 1135
HinfI GANTC 3 cut(s) 502, 700, 740
HpaII CCGG 3 cut(s) 976, 1334, 1351
HphI GGTGA 2 cut(s) 830, 1444
Hpy166II GTNNAC 4 cut(s) 905, 1403, 1435, 1682
Hpy188III TCNNGA 6 cut(s) 35, 82, 133, 731, 747, 1359
Hpy8I GTNNAC 4 cut(s) 905, 1403, 1435, 1682
Hpy99I CGWCG 1 cut(s) 1569
HpyAV CCTTC 5 cut(s) 268, 932, 1298, 1621, 1639
HpyCH4III ACNGT 4 cut(s) 1017, 1186, 1248, 1472
HpyCH4IV ACGT 1 cut(s) 1084
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 1283, 1604
HpyF3I CTNAG 6 cut(s) 290, 381, 581, 783, 1042, 1369
HpySE526I ACGT 1 cut(s) 1084
Hsp92II CATG 6 cut(s) 59, 127, 430, 465, 1270, 1331
HspAI GCGC 1 cut(s) 1135
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 7 cut(s) 135, 319, 370, 787, 1177, 1477, 1568
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 5 cut(s) 160, 1229, 1524, 1610, 1693
LweI GCATC 6 cut(s) 202, 509, 643, 1036, 1513, 1537
MabI ACCWGGT 1 cut(s) 861
MaeI CTAG 2 cut(s) 660, 759
MaeII ACGT 1 cut(s) 1084
MaeIII GTNAC 3 cut(s) 1011, 1720, 1739
MalI GATC 7 cut(s) 137, 321, 372, 789, 1179, 1479, 1570
MbiI CCGCTC 1 cut(s) 1304
MboI GATC 7 cut(s) 135, 319, 370, 787, 1177, 1477, 1568
MboII GAAGA 9 cut(s) 18, 346, 612, 675, 935, 1064, 1424, 1649, 1654
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 3 cut(s) 558, 1107, 1716
MluCI AATT 7 cut(s) 385, 444, 484, 801, 912, 1240, 1483
MlyI GAGTC 2 cut(s) 694, 749
MmeI TCCRAC 4 cut(s) 218, 549, 1205, 1669
Mph1103I ATGCAT 2 cut(s) 129, 1528
MroXI GAANNNNTTC 2 cut(s) 338, 506
MspI CCGG 3 cut(s) 976, 1334, 1351
MspR9I CCNGG 6 cut(s) 863, 886, 977, 1334, 1335, 1449
MvaI CCWGG 3 cut(s) 863, 886, 1449
MwoI GCNNNNNNNGC 3 cut(s) 353, 1283, 1604
NciI CCSGG 3 cut(s) 977, 1334, 1335
NdeI CATATG 1 cut(s) 1528
NdeII GATC 7 cut(s) 135, 319, 370, 787, 1177, 1477, 1568
NlaIII CATG 6 cut(s) 59, 127, 430, 465, 1270, 1331
NlaIV GGNNCC 1 cut(s) 1446
NmuCI GTSAC 1 cut(s) 1011
NsiI ATGCAT 2 cut(s) 129, 1528
NspI RCATGY 3 cut(s) 127, 465, 1331
PciI ACATGT 1 cut(s) 1327
PdmI GAANNNNTTC 2 cut(s) 338, 506
PfeI GAWTC 1 cut(s) 502
PflMI CCANNNNNTGG 1 cut(s) 814
PfoI TCCNGGA 3 cut(s) 884, 975, 1447
PkrI GCNGC 6 cut(s) 175, 1219, 1222, 1539, 1600, 1708
PleI GAGTC 2 cut(s) 694, 748
PpsI GAGTC 2 cut(s) 694, 748
PscI ACATGT 1 cut(s) 1327
PshAI GACNNNNGTC 1 cut(s) 704
PshBI ATTAAT 1 cut(s) 1236
Psp124BI GAGCTC 1 cut(s) 1107
Psp6I CCWGG 3 cut(s) 861, 884, 1447
PspFI CCCAGC 1 cut(s) 343
PspGI CCWGG 3 cut(s) 861, 884, 1447
PspN4I GGNNCC 1 cut(s) 1446
PspPI GGNCC 4 cut(s) 191, 882, 1468, 1682
PstI CTGCAG 1 cut(s) 1711
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 4 cut(s) 542, 846, 906, 1664
RsaNI GTAC 4 cut(s) 541, 845, 905, 1663
SacI GAGCTC 1 cut(s) 1107
SatI GCNGC 6 cut(s) 174, 1218, 1221, 1538, 1599, 1707
Sau3AI GATC 7 cut(s) 135, 319, 370, 787, 1177, 1477, 1568
Sau96I GGNCC 4 cut(s) 191, 882, 1468, 1682
SchI GAGTC 2 cut(s) 694, 749
ScrFI CCNGG 6 cut(s) 863, 886, 977, 1334, 1335, 1449
SduI GDGCHC 3 cut(s) 558, 1107, 1716
SexAI ACCWGGT 1 cut(s) 861
SfaNI GCATC 6 cut(s) 202, 509, 643, 1036, 1513, 1537
SfcI CTRYAG 1 cut(s) 1707
SinI GGWCC 4 cut(s) 191, 882, 1468, 1682
SmaI CCCGGG 1 cut(s) 1335
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 7 cut(s) 385, 444, 484, 801, 912, 1240, 1483
SsiI CCGC 4 cut(s) 164, 898, 1221, 1304
SspI AATATT 2 cut(s) 795, 1008
SspMI CTAG 2 cut(s) 660, 759
SstI GAGCTC 1 cut(s) 1107
StyD4I CCNGG 6 cut(s) 861, 884, 975, 1332, 1333, 1447
TaaI ACNGT 4 cut(s) 1017, 1186, 1248, 1472
TaiI ACGT 1 cut(s) 1087
TaqI TCGA 3 cut(s) 132, 225, 870
TasI AATT 7 cut(s) 385, 444, 484, 801, 912, 1240, 1483
TatI WGTACW 3 cut(s) 540, 904, 1662
TauI GCSGC 1 cut(s) 1223
TfiI GAWTC 1 cut(s) 502
TscAI CASTG 2 cut(s) 907, 1020
TseFI GTSAC 1 cut(s) 1011
TseI GCWGC 5 cut(s) 173, 1217, 1537, 1598, 1706
Tsp45I GTSAC 1 cut(s) 1011
TspDTI ATGAA 4 cut(s) 515, 1080, 1401, 1568
TspGWI ACGGA 1 cut(s) 1379
TspMI CCCGGG 1 cut(s) 1333
TspRI CASTG 2 cut(s) 907, 1020
Van91I CCANNNNNTGG 1 cut(s) 814
VpaK11BI GGWCC 4 cut(s) 191, 882, 1468, 1682
VspI ATTAAT 1 cut(s) 1236
XapI RAATTY 1 cut(s) 385
XceI RCATGY 3 cut(s) 127, 465, 1331
XmaI CCCGGG 1 cut(s) 1333
XmiI GTMKAC 1 cut(s) 1402
XmnI GAANNNNTTC 2 cut(s) 338, 506
XspI CTAG 2 cut(s) 660, 759
Zsp2I ATGCAT 2 cut(s) 129, 1528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.