Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005991

Physical Location & Seq

Genomic Coordinates Forward (+)

69853293 .. 69856583

Gene Structure 3291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020891

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGCTGAATGGGTATCTGGGGTTTTCAGATGGAAATTCTGTGGGCCAAGGACAATTTGAGCCTCGTGGCAAAGAGGGTACCTTTCCTGTCTTAGATTCGAAAAATGTGGGATCTAAATTGAGCATAACTGTTGTTGGTGCCTCTGGAGACCTTGCCAAGAAGAAGATATTCCCGGCACTTTTTGCTCTTTATTATGAAGATTGTCTACCTGAGGATTTTATAGTCTTTGGTTTTGCTCGAACTAAAATGACAGATGAAGAGCTAAGGAACACGATCAGCAGAACCTTGACTTGCAGAATAGATAAGAGGGCAAATTGTGAGGACAAAATGGACCAGTTCTTGAAAAGATGCTTCTACCATTCTGGTCTGTATAATTCTGAGGAGAATTTTGCAGAATTGGACATCAAGCTGAAAGAGAAGGAGGCTGGAAGAAAGTCAAATAGGCTGTTTTACTTATCAATACCTCCAAACATATTTGTGGATGTGGTGAGATGTGCTAGTCTTAGAGCTTCTTCAGAAAATGGGTGGACCAGGGTCATTGTTGAGAAGCCATTTGGTCGTGACTCTGAATCATCTGCGGAGCTAACCAGATGTTTAAAGCAGTACCTTGCTGAAGACCAGATATTTAGGATTGACCATTACTTGGGGAAGGAGCTTGTTGAGAATCTATCAGTGCTTCGCTTCTCAAATCTTGTTTTTGAGCCTGTCTGGTCACGTAACTACATTCGCAACGTGCAACTGATCTTTTCTGAAGATTTTGGCACAGAGGGAAGAGGGGGATATTTTGATAAGTACGGAATCATACGGGACATAATGCAAAATCATCTTCTGCAAATACTAGCACTGTTTGCGATGGAAACACCGGTCAGCTTAGATGCTGAGGACATCAGGAATGAAAAGGTAAAGGTTCTAAGATCAATGAGGCCACTGCAGCTTGAAGATGTAGTTGTTGGCCAGTATAAGGGCCACAGCAAGGGCGGTAAATCTTTTCCTGCTTATATAGATGACCCAACTGTGCCAAACGACAGTCTCACCCCTACATTTGCAGCAGCAGCTCTCTTTATTGATAATGCCAGATGGGATGGAGTTCCTTTCCTGATGAAAGCAGGAAAGGCCCTCCATACCAAGCGGTATGTGGAAATGTTTCATCTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

386

Amino Acids

43.79

Weight (kDa)

6.63

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_N	PF00479	44 - 222	5.4e-58	Glucose-6-phosphate dehydrogenase, NAD binding domain
G6PD_C	PF02781	225 - 377	4.8e-66	Glucose-6-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35790
fragaria_vesca	FvH4_6g40584 FvH4_6g40710
malus_domestica	MD09G1126100.v1.1
prunus_persica	Prupe.3G198600_v2.0.a1
pyrus_communis	pycom09g05030
rosa_chinensis	RchiOBHm_Chr2g0155901 RchiOBHm_Chr2g0156161
rosa_laevigata	RLG00000020874 RLG00000020891
rosa_multiflora	Rmu_sc0000260.1_g000016 Rmu_sc0003417.1_g000025
rosa_roxburghii	Rroxscaffold_2G00093200 Rroxscaffold_2G00093410
rosa_rugosa	Rorug02G0450700 Rorug02G0452000 Rorug02G0452000
rosa_samantha	Rh2AG517300 Rh2AG518600 Rh2BG528500 Rh2BG529900 Rh2CG502000 Rh2CG503600 Rh2DG537600 Rh2DG539000
rosa_wichuraiana	Rw2G042580 Rw2G042710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	77
AccB1I	GGYRCC	2 cut(s)	77, 137
AccB7I	CCANNNNNTGG	1 cut(s)	643
AccI	GTMKAC	1 cut(s)	205
AciI	CCGC	3 cut(s)	578, 978, 1129
AclWI	GGATC	1 cut(s)	118
AcoI	YGGCCR	1 cut(s)	952
AcsI	RAATTY	2 cut(s)	34, 385
AcuI	CTGAAG	3 cut(s)	498, 633, 771
AfaI	GTAC	3 cut(s)	79, 605, 794
AfiI	CCNNNNNNNGG	3 cut(s)	643, 961, 973
AgeI	ACCGGT	1 cut(s)	862
AgsI	TTSAA	2 cut(s)	343, 938
AjnI	CCWGG	1 cut(s)	530
AluBI	AGCT	8 cut(s)	262, 409, 509, 583, 655, 870, 934, 1055
AluI	AGCT	8 cut(s)	262, 409, 509, 583, 655, 870, 934, 1055
Alw26I	GTCTC	2 cut(s)	141, 1034
AlwI	GGATC	1 cut(s)	118
AoxI	GGCC	5 cut(s)	43, 923, 952, 964, 1113
ApeKI	GCWGC	4 cut(s)	931, 1046, 1049, 1052
ApoI	RAATTY	2 cut(s)	34, 385
AsiGI	ACCGGT	1 cut(s)	862
Asp700I	GAANNNNTTC	2 cut(s)	167, 1143
Asp718I	GGTACC	1 cut(s)	77
AspS9I	GGNCC	5 cut(s)	43, 331, 528, 964, 1114
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	2 cut(s)	499, 1024
AsuII	TTCGAA	1 cut(s)	98
AvaII	GGWCC	2 cut(s)	331, 528
AxyI	CCTNAGG	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	954
BanI	GGYRCC	2 cut(s)	77, 137
BarI	GAAGNNNNNNTAC	2 cut(s)	189, 221
BauI	CACGAG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	621
BbvCI	CCTCAGC	1 cut(s)	879
BbvI	GCAGC	4 cut(s)	943, 1058, 1061, 1064
BccI	CCATC	4 cut(s)	23, 847, 1071, 1076
BciT130I	CCWGG	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	2 cut(s)	141, 1034
BfaI	CTAG	2 cut(s)	498, 839
BfmI	CTRYAG	1 cut(s)	929
BisI	GCNGC	4 cut(s)	932, 1047, 1050, 1053
BlsI	GCNGC	4 cut(s)	933, 1048, 1051, 1054
Bme1390I	CCNGG	2 cut(s)	173, 532
Bme18I	GGWCC	2 cut(s)	331, 528
BmgT120I	GGNCC	5 cut(s)	43, 331, 528, 964, 1114
BmiI	GGNNCC	2 cut(s)	79, 139
BmrFI	CCNGG	2 cut(s)	173, 532
BmsI	GCATC	2 cut(s)	338, 865
BoxI	GACNNNNGTC	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	621
BpmI	CTGGAG	1 cut(s)	165
Bpu10I	CCTNAGC	2 cut(s)	263, 879
Bpu14I	TTCGAA	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	716
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	46, 531
BsaWI	WCCGGW	1 cut(s)	862
Bsc4I	CCNNNNNNNGG	3 cut(s)	643, 961, 973
Bse118I	RCCGGY	1 cut(s)	862
Bse1I	ACTGG	2 cut(s)	334, 955
Bse21I	CCTNAGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	532
BseDI	CCNNGG	2 cut(s)	46, 531
BseGI	GGATG	2 cut(s)	487, 1087
BseLI	CCNNNNNNNGG	3 cut(s)	643, 961, 973
BseMII	CTCAG	3 cut(s)	201, 369, 870
BseNI	ACTGG	2 cut(s)	334, 955
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	4 cut(s)	943, 1058, 1061, 1064
BshFI	GGCC	5 cut(s)	45, 925, 954, 966, 1115
BshNI	GGYRCC	2 cut(s)	77, 137
BshTI	ACCGGT	1 cut(s)	862
BsiSI	CCGG	2 cut(s)	173, 863
BslFI	GGGAC	1 cut(s)	821
BslI	CCNNNNNNNGG	3 cut(s)	643, 961, 973
BsmAI	GTCTC	2 cut(s)	141, 1034
BsmFI	GGGAC	1 cut(s)	821
BsnI	GGCC	5 cut(s)	45, 925, 954, 966, 1115
Bso31I	GGTCTC	1 cut(s)	141
Bsp119I	TTCGAA	1 cut(s)	98
Bsp143I	GATC	4 cut(s)	110, 273, 741, 914
BspACI	CCGC	3 cut(s)	578, 978, 1129
BspANI	GGCC	5 cut(s)	45, 925, 954, 966, 1115
BspCNI	CTCAG	3 cut(s)	202, 370, 871
BspLI	GGNNCC	2 cut(s)	79, 139
BspMAI	CTGCAG	1 cut(s)	933
BspPI	GGATC	1 cut(s)	118
BspQI	GCTCTTC	1 cut(s)	252
BspT104I	TTCGAA	1 cut(s)	98
BspT107I	GGYRCC	2 cut(s)	77, 137
BspTNI	GGTCTC	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	862
BsrI	ACTGG	2 cut(s)	334, 955
BssAI	RCCGGY	1 cut(s)	862
BssECI	CCNNGG	2 cut(s)	46, 531
BssMI	GATC	4 cut(s)	110, 273, 741, 914
BssSI	CACGAG	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	46
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	532
Bst4CI	ACNGT	4 cut(s)	130, 846, 1015, 1028
Bst6I	CTCTTC	2 cut(s)	252, 766
BstAPI	GCANNNNNTGC	2 cut(s)	182, 848
BstBAI	YACGTR	1 cut(s)	716
BstBI	TTCGAA	1 cut(s)	98
BstDEI	CTNAG	8 cut(s)	91, 210, 263, 378, 503, 871, 879, 911
BstF5I	GGATG	2 cut(s)	487, 1087
BstKTI	GATC	4 cut(s)	113, 276, 744, 917
BstMAI	GTCTC	2 cut(s)	141, 1034
BstMBI	GATC	4 cut(s)	110, 273, 741, 914
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 848, 931, 1052, 1112
BstNI	CCWGG	1 cut(s)	532
BstPAI	GACNNNNGTC	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	171, 530
BstSFI	CTRYAG	1 cut(s)	929
BstV1I	GCAGC	4 cut(s)	943, 1058, 1061, 1064
BstV2I	GAAGAC	1 cut(s)	621
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
Bsu36I	CCTNAGG	1 cut(s)	210
BsuRI	GGCC	5 cut(s)	45, 925, 954, 966, 1115
BtgZI	GCGATG	1 cut(s)	866
BtsCI	GGATG	2 cut(s)	487, 1087
BtsI	GCAGTG	1 cut(s)	926
BtsIMutI	CAGTG	3 cut(s)	678, 842, 926
Cfr10I	RCCGGY	1 cut(s)	862
Cfr13I	GGNCC	5 cut(s)	43, 331, 528, 964, 1114
Csp6I	GTAC	3 cut(s)	78, 604, 793
CspAI	ACCGGT	1 cut(s)	862
CviQI	GTAC	3 cut(s)	78, 604, 793
DdeI	CTNAG	8 cut(s)	91, 210, 263, 378, 503, 871, 879, 911
DpnI	GATC	4 cut(s)	112, 275, 743, 916
DpnII	GATC	4 cut(s)	110, 273, 741, 914
DraI	TTTAAA	1 cut(s)	597
EaeI	YGGCCR	1 cut(s)	952
Eam1104I	CTCTTC	2 cut(s)	252, 766
EarI	CTCTTC	2 cut(s)	252, 766
Eco130I	CCWWGG	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	331, 528
Eco57I	CTGAAG	3 cut(s)	498, 633, 771
Eco81I	CCTNAGG	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	1114
EcoRII	CCWGG	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	46
FaqI	GGGAC	1 cut(s)	821
FblI	GTMKAC	1 cut(s)	205
Fnu4HI	GCNGC	4 cut(s)	932, 1047, 1050, 1053
FokI	GGATG	2 cut(s)	494, 1094
Fsp4HI	GCNGC	4 cut(s)	932, 1047, 1050, 1053
FspBI	CTAG	2 cut(s)	498, 839
GluI	GCNGC	4 cut(s)	932, 1047, 1050, 1053
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	5 cut(s)	45, 925, 954, 966, 1115
HapII	CCGG	2 cut(s)	173, 863
HinfI	GANTC	5 cut(s)	95, 563, 569, 664, 798
HpaII	CCGG	2 cut(s)	173, 863
HphI	GGTGA	2 cut(s)	499, 1024
Hpy166II	GTNNAC	2 cut(s)	206, 528
Hpy188I	TCNGA	5 cut(s)	28, 379, 517, 568, 751
Hpy188III	TCNNGA	5 cut(s)	144, 340, 560, 889, 1096
Hpy8I	GTNNAC	2 cut(s)	206, 528
HpyAV	CCTTC	2 cut(s)	412, 643
HpyCH4III	ACNGT	4 cut(s)	130, 846, 1015, 1028
HpyCH4IV	ACGT	2 cut(s)	715, 732
HpyCH4V	TGCA	7 cut(s)	294, 392, 736, 817, 832, 931, 1046
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 848, 931, 1052, 1112
HpyF3I	CTNAG	8 cut(s)	91, 210, 263, 378, 503, 871, 879, 911
HpySE526I	ACGT	2 cut(s)	715, 732
KpnI	GGTACC	1 cut(s)	81
Kzo9I	GATC	4 cut(s)	110, 273, 741, 914
LguI	GCTCTTC	1 cut(s)	252
LmnI	GCTCC	2 cut(s)	580, 652
Lsp1109I	GCAGC	4 cut(s)	943, 1058, 1061, 1064
LweI	GCATC	2 cut(s)	338, 865
MaeI	CTAG	2 cut(s)	498, 839
MaeII	ACGT	2 cut(s)	715, 732
MaeIII	GTNAC	3 cut(s)	560, 711, 716
MalI	GATC	4 cut(s)	112, 275, 743, 916
MboI	GATC	4 cut(s)	110, 273, 741, 914
MflI	RGATCY	1 cut(s)	110
MlsI	TGGCCA	1 cut(s)	954
MluCI	AATT	7 cut(s)	34, 53, 116, 313, 373, 385, 395
MluNI	TGGCCA	1 cut(s)	954
MlyI	GAGTC	1 cut(s)	557
Mox20I	TGGCCA	1 cut(s)	954
MroXI	GAANNNNTTC	2 cut(s)	167, 1143
MscI	TGGCCA	1 cut(s)	954
MseI	TTAA	1 cut(s)	596
MslI	CAYNNNNRTG	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	954
MspI	CCGG	2 cut(s)	173, 863
MspR9I	CCNGG	2 cut(s)	173, 532
MvaI	CCWGG	1 cut(s)	532
MwoI	GCNNNNNNNGC	5 cut(s)	182, 848, 931, 1052, 1112
NciI	CCSGG	1 cut(s)	173
NdeII	GATC	4 cut(s)	110, 273, 741, 914
NlaIV	GGNNCC	2 cut(s)	79, 139
NmuCI	GTSAC	2 cut(s)	560, 711
NspV	TTCGAA	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	252
PdmI	GAANNNNTTC	2 cut(s)	167, 1143
PfeI	GAWTC	4 cut(s)	95, 569, 664, 798
PflMI	CCANNNNNTGG	1 cut(s)	643
PinAI	ACCGGT	1 cut(s)	862
PkrI	GCNGC	4 cut(s)	933, 1048, 1051, 1054
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
Ppu21I	YACGTR	1 cut(s)	716
PshAI	GACNNNNGTC	1 cut(s)	533
Psp6I	CCWGG	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	2 cut(s)	79, 139
PspPI	GGNCC	5 cut(s)	43, 331, 528, 964, 1114
PstI	CTGCAG	1 cut(s)	933
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	3 cut(s)	79, 605, 794
RsaNI	GTAC	3 cut(s)	78, 604, 793
RseI	CAYNNNNRTG	1 cut(s)	476
SapI	GCTCTTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	596
SatI	GCNGC	4 cut(s)	932, 1047, 1050, 1053
Sau3AI	GATC	4 cut(s)	110, 273, 741, 914
Sau96I	GGNCC	5 cut(s)	43, 331, 528, 964, 1114
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	2 cut(s)	173, 532
SfaNI	GCATC	2 cut(s)	338, 865
SfcI	CTRYAG	1 cut(s)	929
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	2 cut(s)	331, 528
SmiMI	CAYNNNNRTG	1 cut(s)	476
Sse9I	AATT	7 cut(s)	34, 53, 116, 313, 373, 385, 395
SsiI	CCGC	3 cut(s)	578, 978, 1129
SspMI	CTAG	2 cut(s)	498, 839
StyD4I	CCNGG	2 cut(s)	171, 530
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	4 cut(s)	130, 846, 1015, 1028
TaiI	ACGT	2 cut(s)	718, 735
TaqI	TCGA	2 cut(s)	98, 238
TasI	AATT	7 cut(s)	34, 53, 116, 313, 373, 385, 395
TfiI	GAWTC	4 cut(s)	95, 569, 664, 798
Tru1I	TTAA	1 cut(s)	596
Tru9I	TTAA	1 cut(s)	596
TscAI	CASTG	3 cut(s)	678, 849, 933
TseFI	GTSAC	2 cut(s)	560, 711
TseI	GCWGC	4 cut(s)	931, 1046, 1049, 1052
Tsp45I	GTSAC	2 cut(s)	560, 711
TspDTI	ATGAA	5 cut(s)	210, 270, 909, 1115, 1136
TspGWI	ACGGA	1 cut(s)	810
TspRI	CASTG	3 cut(s)	678, 849, 933
Van91I	CCANNNNNTGG	1 cut(s)	643
VpaK11BI	GGWCC	2 cut(s)	331, 528
XapI	RAATTY	2 cut(s)	34, 385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1132
XmiI	GTMKAC	1 cut(s)	205
XmnI	GAANNNNTTC	2 cut(s)	167, 1143
XspI	CTAG	2 cut(s)	498, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.