Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005991

Physical Location & Seq

Genomic Coordinates Forward (+)

58093622 .. 58097406

Gene Structure 3785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0452000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGATGGCATCAGACTTGATTAGATATTATTTCCCTTCTTCTTTGCGTGTTTCGCTCAAGAAGCATGGTCATGAGCCCGATCCTATTCAGTTTTTTTATGATAAGCATACACGGAATGACAAAGAAAAAAACTGGATTTATGAAGTTGCTGAGCGGACACATGCTGGTATGCAAGAGAAGTTGGCAGAAATTGTAGCAGTTGAAGGTAATGAGACTACAGAGATGCGAGAAAGAGCATATGTTGCAGTGATGGGACGTGAGAAACGTCACAGAGTTTGCGGTTATGGACTAGGTGTAATACCTGATATGGTGCCTTATCTTCAAATTGATGGTAGCTCATCATCACACAGATCATATGGAAGACATTATGCTCACTTGCAGTCACAATTAATTTATGGAGTTAGAGTCCAAGTACCAACAACAACAAGAGCAAGCACAGGTGCAGCAAGTTCAAACTCAGGAACGACTCTTGCAAACCCAACAAGAATTGGCAATGTTAAAGCAAATGATGCAATCCCAGCAATCTACTCCACCTTCACAACAATCTTCTCAGCCTTTGCAGCAACCATCCTTCCAGATGCCTTCTTATCCTCGTCAAATGTACTGGCCTCAACCGCAGATCTATCCTCAAATGCCTTATCAGCCTCAACATGCTTATCCTACCACTGGACTAACTGGATTGCTTATGGGAGATACAAGTGTCCAAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

237

Amino Acids

26.38

Weight (kDa)

9.06

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	20 - 99	7.4e-07	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35790
fragaria_vesca	FvH4_6g40584 FvH4_6g40710
malus_domestica	MD09G1126100.v1.1
prunus_persica	Prupe.3G198600_v2.0.a1
pyrus_communis	pycom09g05030
rosa_chinensis	RchiOBHm_Chr2g0155901 RchiOBHm_Chr2g0156161
rosa_laevigata	RLG00000020874 RLG00000020891
rosa_multiflora	Rmu_sc0000260.1_g000016 Rmu_sc0003417.1_g000025
rosa_roxburghii	Rroxscaffold_2G00093200 Rroxscaffold_2G00093410
rosa_rugosa	Rorug02G0450700 Rorug02G0452000 Rorug02G0452000
rosa_samantha	Rh2AG517300 Rh2AG518600 Rh2BG528500 Rh2BG529900 Rh2CG502000 Rh2CG503600 Rh2DG537600 Rh2DG539000
rosa_wichuraiana	Rw2G042580 Rw2G042710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AccBSI	CCGCTC	1 cut(s)	154
AciI	CCGC	3 cut(s)	154, 279, 615
AclWI	GGATC	1 cut(s)	74
AfaI	GTAC	2 cut(s)	414, 603
AfiI	CCNNNNNNNGG	1 cut(s)	666
AgsI	TTSAA	3 cut(s)	203, 323, 453
AjiI	CACGTC	1 cut(s)	257
AluBI	AGCT	1 cut(s)	336
AluI	AGCT	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	606
ApeKI	GCWGC	2 cut(s)	443, 560
AseI	ATTAAT	1 cut(s)	389
BaeI	ACNNNNGTAYC	1 cut(s)	685
BanI	GGYRCC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	367
BbvI	GCAGC	2 cut(s)	455, 572
BccI	CCATC	3 cut(s)	244, 323, 575
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	216
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	2 cut(s)	444, 561
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	2 cut(s)	445, 562
BmgBI	CACGTC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	312
BmsI	GCATC	4 cut(s)	17, 213, 499, 568
BpiI	GAAGAC	1 cut(s)	367
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	41
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	666
Bse1I	ACTGG	4 cut(s)	137, 609, 671, 680
Bse3DI	GCAATG	1 cut(s)	499
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	666
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	3 cut(s)	141, 471, 564
BseNI	ACTGG	4 cut(s)	137, 609, 671, 680
BseXI	GCAGC	2 cut(s)	455, 572
BseYI	CCCAGC	1 cut(s)	517
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	608
BshNI	GGYRCC	1 cut(s)	310
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	666
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	608
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	79, 350, 619
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	3 cut(s)	154, 279, 615
BspANI	GGCC	1 cut(s)	608
BspCNI	CTCAG	3 cut(s)	142, 470, 563
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	310
BsrBI	CCGCTC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	499
BsrI	ACTGG	4 cut(s)	137, 609, 671, 680
BssMI	GATC	3 cut(s)	79, 350, 619
BstAPI	GCANNNNNTGC	2 cut(s)	242, 509
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	3 cut(s)	150, 457, 550
BstF5I	GGATG	1 cut(s)	567
BstKTI	GATC	3 cut(s)	82, 353, 622
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	3 cut(s)	79, 350, 619
BstMWI	GCNNNNNNNGC	8 cut(s)	52, 61, 242, 509, 518, 560, 614, 641
BstNSI	RCATGY	2 cut(s)	164, 654
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	455, 572
BstV2I	GAAGAC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	1 cut(s)	608
BtrI	CACGTC	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	567
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	252, 664
Cac8I	GCNNGC	1 cut(s)	433
CciI	TCATGA	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	413, 602
CviAII	CATG	4 cut(s)	65, 71, 161, 651
CviJI	RGCY	5 cut(s)	76, 336, 554, 608, 644
CviKI_1	RGCY	5 cut(s)	76, 336, 554, 608, 644
CviQI	GTAC	2 cut(s)	413, 602
DdeI	CTNAG	3 cut(s)	150, 457, 550
DpnI	GATC	3 cut(s)	81, 352, 621
DpnII	GATC	3 cut(s)	79, 350, 619
Eco24I	GRGCYC	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	78
FaeI	CATG	4 cut(s)	68, 74, 164, 654
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	4 cut(s)	64, 70, 160, 650
FauNDI	CATATG	2 cut(s)	238, 355
Fnu4HI	GCNGC	2 cut(s)	444, 561
FokI	GGATG	1 cut(s)	554
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	2 cut(s)	444, 561
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	2 cut(s)	444, 561
GsaI	CCCAGC	1 cut(s)	521
HaeIII	GGCC	1 cut(s)	608
Hin1II	CATG	4 cut(s)	68, 74, 164, 654
HinfI	GANTC	2 cut(s)	405, 466
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	4 cut(s)	58, 71, 459, 575
HpyAV	CCTTC	5 cut(s)	45, 197, 544, 581, 592
HpyCH4IV	ACGT	2 cut(s)	256, 265
HpyCH4V	TGCA	7 cut(s)	172, 245, 379, 443, 473, 512, 560
HpyF10VI	GCNNNNNNNGC	8 cut(s)	52, 61, 242, 509, 518, 560, 614, 641
HpyF3I	CTNAG	3 cut(s)	150, 457, 550
HpySE526I	ACGT	2 cut(s)	256, 265
Hsp92II	CATG	4 cut(s)	68, 74, 164, 654
Kzo9I	GATC	3 cut(s)	79, 350, 619
Lsp1109I	GCAGC	2 cut(s)	455, 572
LweI	GCATC	4 cut(s)	17, 213, 499, 568
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	2 cut(s)	256, 265
MaeIII	GTNAC	2 cut(s)	266, 381
MalI	GATC	3 cut(s)	81, 352, 621
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	3 cut(s)	79, 350, 619
MboII	GAAGA	4 cut(s)	30, 311, 372, 538
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	5 cut(s)	189, 324, 386, 390, 486
MlyI	GAGTC	2 cut(s)	414, 460
MnlI	CCTC	4 cut(s)	601, 619, 637, 655
MseI	TTAA	2 cut(s)	389, 498
MslI	CAYNNNNRTG	1 cut(s)	69
MwoI	GCNNNNNNNGC	8 cut(s)	52, 61, 242, 509, 518, 560, 614, 641
NdeI	CATATG	2 cut(s)	238, 355
NdeII	GATC	3 cut(s)	79, 350, 619
NlaIII	CATG	4 cut(s)	68, 74, 164, 654
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	2 cut(s)	266, 381
NspI	RCATGY	2 cut(s)	164, 654
PagI	TCATGA	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	445, 562
PleI	GAGTC	2 cut(s)	413, 460
PpsI	GAGTC	2 cut(s)	413, 460
PshBI	ATTAAT	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	517
PspN4I	GGNNCC	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	2 cut(s)	414, 603
RsaNI	GTAC	2 cut(s)	413, 602
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	389, 498
SatI	GCNGC	2 cut(s)	444, 561
Sau3AI	GATC	3 cut(s)	79, 350, 619
SchI	GAGTC	2 cut(s)	414, 460
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	8 cut(s)	208, 259, 268, 295, 304, 338, 442, 536
SfaNI	GCATC	4 cut(s)	17, 213, 499, 568
SfcI	CTRYAG	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	5 cut(s)	189, 324, 386, 390, 486
SsiI	CCGC	3 cut(s)	154, 279, 615
SspMI	CTAG	1 cut(s)	290
TaiI	ACGT	2 cut(s)	259, 268
TasI	AATT	5 cut(s)	189, 324, 386, 390, 486
TatI	WGTACW	1 cut(s)	601
Tru1I	TTAA	2 cut(s)	389, 498
Tru9I	TTAA	2 cut(s)	389, 498
TscAI	CASTG	2 cut(s)	252, 671
TseFI	GTSAC	2 cut(s)	266, 381
TseI	GCWGC	2 cut(s)	443, 560
Tsp45I	GTSAC	2 cut(s)	266, 381
TspDTI	ATGAA	1 cut(s)	156
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	2 cut(s)	252, 671
VspI	ATTAAT	1 cut(s)	389
XceI	RCATGY	2 cut(s)	164, 654
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.