Rorug02G0450700

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005991
Physical Location & Seq
Reverse (-)
57781193 .. 57781994
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0450700.1

Sequence Viewer

Length: 603 bp
ATGGCAAAGGTTCATCCCCAAGCACCACTTTCTTCTTCATCCCCTGGCTACTTCACTTCAAAACAAGAAACATTCACTATATGGATGAAGTCTCTCATATTGAATGGCCATGGTTGCACTGTTTTTGATTCTAACGGTCAGATCGTGTATCGTGTAGATAATTACGACTCTAGAGGTAGAGCTAAAGTTCATCTTATGGATTTGAAAGGCCAAATCCTATTCACCATACTAAGAAAGAAATCCAAATTTCTTGGTGTCTGGGAGGGATACAGATCCAGTAATGGTAAAGAGATCAACCTGAAAAATACACCCGGTTTTCAAGTTAGGAGAAGCTTTAAAGGCAAGTCAGCATGTAAAGTCATCGTGGGACTAGACAAGAATCAAAAACAGCAATACAGAATAGAGAGCTGGAGTAAAGGAAAGTCAGCCTGCAAGATACTAGACAAGTTTGGAAGACTTGTTGCAGAGGTAAAGAGAAAGCAGTCAACATGTGGAGTGGTACTAGGAGAAGATGTTTTGACACTGGTGGTAGAGCCCTTCATGGATCACTCTCTTATAGTAGGGCTTCTTGTTGTGTATGGTCTCATCAACCGTAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230
Pfam Domains
Protein Families
G6PD_C G6PD_N

Protein Analysis

200

Amino Acids

22.5

Weight (kDa)

9.96

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 24 - 193 1.5e-36 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 267, 552
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 1 cut(s) 501
AflIII ACRYGT 1 cut(s) 488
AgsI TTSAA 4 cut(s) 60, 103, 205, 320
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 3 cut(s) 182, 333, 408
AluI AGCT 3 cut(s) 182, 333, 408
Alw26I GTCTC 2 cut(s) 96, 587
AlwI GGATC 2 cut(s) 267, 552
AoxI GGCC 2 cut(s) 106, 208
ApoI RAATTY 1 cut(s) 245
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 214
BalI TGGCCA 1 cut(s) 108
BanII GRGCYC 1 cut(s) 537
BbsI GAAGAC 1 cut(s) 460
BciT130I CCWGG 1 cut(s) 45
BciVI GTATCC 1 cut(s) 260
BcnI CCSGG 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 96, 587
BfaI CTAG 4 cut(s) 171, 371, 440, 503
BfuI GTATCC 1 cut(s) 260
Bme1390I CCNGG 2 cut(s) 45, 312
BmrFI CCNGG 2 cut(s) 45, 312
BpiI GAAGAC 1 cut(s) 460
BpmI CTGGAG 1 cut(s) 430
BpuMI CCSGG 1 cut(s) 312
BsaBI GATNNNNATC 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 2 cut(s) 43, 109
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bse1I ACTGG 2 cut(s) 276, 528
Bse8I GATNNNNATC 1 cut(s) 271
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 43, 109
BseGI GGATG 3 cut(s) 13, 38, 90
BseJI GATNNNNATC 1 cut(s) 271
BseNI ACTGG 2 cut(s) 276, 528
BshFI GGCC 2 cut(s) 108, 210
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 381
BsmAI GTCTC 2 cut(s) 96, 587
BsmFI GGGAC 1 cut(s) 381
BsnI GGCC 2 cut(s) 108, 210
Bso31I GGTCTC 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 537
Bsp143I GATC 4 cut(s) 141, 272, 291, 544
Bsp19I CCATGG 1 cut(s) 109
BspANI GGCC 2 cut(s) 108, 210
BspPI GGATC 2 cut(s) 267, 552
BspTNI GGTCTC 1 cut(s) 587
BsrI ACTGG 2 cut(s) 276, 528
BssECI CCNNGG 2 cut(s) 43, 109
BssMI GATC 4 cut(s) 141, 272, 291, 544
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 3 cut(s) 121, 137, 593
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 1 cut(s) 230
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 3 cut(s) 13, 38, 90
BstKTI GATC 4 cut(s) 144, 275, 294, 547
BstMAI GTCTC 2 cut(s) 96, 587
BstMBI GATC 4 cut(s) 141, 272, 291, 544
BstMWI GCNNNNNNNGC 2 cut(s) 114, 339
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 2 cut(s) 354, 492
BstSCI CCNGG 2 cut(s) 43, 310
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 2 cut(s) 108, 210
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 3 cut(s) 13, 38, 90
BtsIMutI CAGTG 2 cut(s) 117, 521
Cac8I GCNNGC 1 cut(s) 430
Csp6I GTAC 1 cut(s) 500
CviAII CATG 4 cut(s) 110, 351, 489, 541
CviJI RGCY 9 cut(s) 48, 108, 182, 210, 333, 408, 428, 535, 565
CviKI_1 RGCY 9 cut(s) 48, 108, 182, 210, 333, 408, 428, 535, 565
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 1 cut(s) 230
DpnI GATC 4 cut(s) 143, 274, 293, 546
DpnII GATC 4 cut(s) 141, 272, 291, 544
DraI TTTAAA 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 537
Eco31I GGTCTC 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 4 cut(s) 113, 354, 492, 544
FalI AAGNNNNNCTT 4 cut(s) 12, 44, 177, 209
FaqI GGGAC 1 cut(s) 381
FatI CATG 4 cut(s) 109, 350, 488, 540
FokI GGATG 2 cut(s) 25, 97
FriOI GRGCYC 1 cut(s) 537
FspBI CTAG 4 cut(s) 171, 371, 440, 503
GsuI CTGGAG 1 cut(s) 430
HaeIII GGCC 2 cut(s) 108, 210
HapII CCGG 1 cut(s) 312
Hin1II CATG 4 cut(s) 113, 354, 492, 544
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 3 cut(s) 128, 167, 379
HpaII CCGG 1 cut(s) 312
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 486
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 1 cut(s) 486
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 3 cut(s) 121, 137, 593
HpyCH4V TGCA 3 cut(s) 117, 432, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 339
HpyF3I CTNAG 1 cut(s) 230
Hsp92II CATG 4 cut(s) 113, 354, 492, 544
Kzo9I GATC 4 cut(s) 141, 272, 291, 544
LpnPI CCDG 9 cut(s) 30, 57, 244, 289, 311, 325, 394, 442, 509
MaeI CTAG 4 cut(s) 171, 371, 440, 503
MalI GATC 4 cut(s) 143, 274, 293, 546
MboI GATC 4 cut(s) 141, 272, 291, 544
MboII GAAGA 4 cut(s) 24, 27, 465, 521
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 537
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 3 cut(s) 160, 245, 596
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 3 cut(s) 167, 256, 460
Mox20I TGGCCA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 108
MseI TTAA 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 108
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 2 cut(s) 45, 312
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 114, 339
NciI CCSGG 1 cut(s) 312
NcoI CCATGG 1 cut(s) 109
NdeII GATC 4 cut(s) 141, 272, 291, 544
NlaIII CATG 4 cut(s) 113, 354, 492, 544
NspI RCATGY 2 cut(s) 354, 492
PciI ACATGT 1 cut(s) 488
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 2 cut(s) 128, 379
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PscI ACATGT 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
SaqAI TTAA 1 cut(s) 336
Sau3AI GATC 4 cut(s) 141, 272, 291, 544
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 2 cut(s) 45, 312
SduI GDGCHC 1 cut(s) 537
SetI ASST 7 cut(s) 12, 178, 184, 300, 335, 410, 471
Sse9I AATT 3 cut(s) 160, 245, 596
SspMI CTAG 4 cut(s) 171, 371, 440, 503
StyD4I CCNGG 2 cut(s) 43, 310
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 3 cut(s) 121, 137, 593
TasI AATT 3 cut(s) 160, 245, 596
TfiI GAWTC 2 cut(s) 128, 379
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 2 cut(s) 124, 528
TspDTI ATGAA 4 cut(s) 27, 101, 179, 529
TspRI CASTG 2 cut(s) 124, 528
XapI RAATTY 1 cut(s) 245
XbaI TCTAGA 1 cut(s) 170
XceI RCATGY 2 cut(s) 354, 492
XspI CTAG 4 cut(s) 171, 371, 440, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.