Prupe.3G198600_v2.0.a1

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
20821071 .. 20825286
4216 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G198600.1

Sequence Viewer

Length: 1770 bp
ATGGCTACTTACCCCAGTCCTTGTTCATCTTCTTCAACCTCATCCACACCTTTTTCATTCAAGAATGAGACACGCCAGTTCAACAAAGTCATCACTTTGCTAAGAGAAGCACATTCTTCTTCCAGATGGGTCTCTCAGATTCGCCTTAGAATCCCTGCCAGAAAGCACTTCCAGCTCAAATCGTCAAATGGGCATCCACTCAATGCTGTGTCTTTCAATGACGCTGGAAGTCCTGTGGGCAAAGAACAGACTGAACCTCGAGGCAAAGTCTTTCCCATCTCAGATTCAGAAAATGTAGAATCTAAATTAAGCATAACCGTTGTTGGTGCTTCTGGAGACCTTGCCAAGAAGAAGATTTTTCCAGCACTTTTTGCTCTTTATTATGAAGATTGTCTGCCTGAGAATTTTGTGGTGTTTGGTTATGCTCGAACTGAAATGACTGATGAAGAGCTAAGGAACGTGATTAGCACAACCTTGACTTGCAGGATAGATCAGCGGGAAAATTGTGAGGGGAAAATGGATCAGTTCTTGAAAAGGTGCTTCTACCATGCTGGTCAGTATAATTCTGAGGAGCATTTTGCAGAATTGGACCGCAAGCTGAAAGAGAAGGAGGCTGGAAGCAAGTCAAATAGGTTGTTTTACTTATCAATACCTCCAAACATATTTGTGGATGTGGTGAGATGTGCTAGCGTTAGAGCTTCTTCAGCAAATGGGTGGACAAGGGTCATTGTTGAAAAGCCATTTGGTCGTGACTCTGAATCATCTGCTCAGCTAACCAAATGTTTAAAGCACTACCTTACTGAAGACCAAATATTTAGGATTGACCATTACTTGGGCAAGGAGCTTGTTGAGAACCTGTCAGTGCTTCGCTTCTCAAATCTTGTTTTTGAGCCTGTCTGGTCTCGGAACTACATTCGTAATGTGCAACTGATTTTTTCTGAAGATTTTGGTACAGAGGGAAGAGGAGGATATTTTGATAAGTATGGAATCATACGGGACATAATGCAAAATCATCTTCTGCAAATACTAGCACTGTTTGCTATGGAAACACCAGTCAGCTTAGATGCTGAAGACATTAGGAATGAAAAGGTAAAGGTTATAAGGTCAATGAGGCCACTGCTGCTTGAAGATGTAGTTGTCGGTCAATATAAGGGCCATAGCAAGGGCAGTAAATCGTATCCTGCTTATATAGATGACCCAACTGTGCCAAAAGACAGTCGCACCCCTACATTTGCAGCAGCAGCTCTCTTTATTGATAATGCCAGATGGGATGGGGTTCCTTTCTTGATGAAAGCAGGAAAAGCGCTCCATACTAAGCGAGCAGAGATCAGAGTCCAATTCAGACATGTCCCAGGTAATTTGTACAAGAGGAACTTTGGAACTGATTTAGATAAGGCTACAAATGAGCTTGTGCTTCGTGTACAACCTGATGAAGCTATATATCTGAAGATCAACAACAAAGTCCCTGGTCTTGGAATGAGACTAGATCGAAGTGACCTAAATTTGCTTTACCGATCAAGGTATCCAGCAGAAATACCAGATGCATATGAGAGGCTACTCTTAGATGCAATTGAAGGGGAACGGAGGTTGTTCATTAGAAGTGATGAGCTTGATGCTGCTTGGGCTCTATTCACACCATTGTTAAAGCAGCTTGATGAGAAGAAGATTGTTCCTGAGCTCTACCCCTACGGTAGTAGAGGGCCCGTAGGACCACATTATCTTGCTGCAAAGCACAATGTCAGATGGGGAGATCTCGGCGATGATGACTAG

Protein Analysis

590

Amino Acids

67.09

Weight (kDa)

8.57

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1100
AbsI CCTCGAGG 1 cut(s) 258
AccB7I CCANNNNNTGG 1 cut(s) 832
AciI CCGC 2 cut(s) 496, 592
AclWI GGATC 1 cut(s) 528
AcsI RAATTY 2 cut(s) 403, 1501
AcuI CTGAAG 5 cut(s) 687, 822, 960, 1089, 1466
AfaI GTAC 3 cut(s) 952, 1364, 1422
AfeI AGCGCT 1 cut(s) 1305
AfiI CCNNNNNNNGG 3 cut(s) 832, 1162, 1472
AflIII ACRYGT 1 cut(s) 1345
AgsI TTSAA 8 cut(s) 36, 61, 82, 217, 532, 734, 1127, 1574
AjnI CCWGG 2 cut(s) 1351, 1465
AjuI GAANNNNNNNTTGG 2 cut(s) 726, 758
Alw21I GWGCWC 1 cut(s) 1680
Alw26I GTCTC 5 cut(s) 62, 136, 330, 906, 1474
AlwI GGATC 1 cut(s) 528
Ama87I CYCGRG 1 cut(s) 258
Aor51HI AGCGCT 1 cut(s) 1305
AoxI GGCC 3 cut(s) 1112, 1153, 1700
ApaI GGGCCC 1 cut(s) 1704
ApeKI GCWGC 7 cut(s) 1120, 1235, 1238, 1241, 1616, 1648, 1724
ApoI RAATTY 2 cut(s) 403, 1501
AspLEI GCGC 1 cut(s) 1306
AspS9I GGNCC 5 cut(s) 589, 1153, 1700, 1701, 1709
AsuHPI GGTGA 1 cut(s) 688
AsuNHI GCTAGC 1 cut(s) 686
AvaI CYCGRG 1 cut(s) 258
AvaII GGWCC 2 cut(s) 589, 1709
BaeGI GKGCMC 1 cut(s) 1704
BanII GRGCYC 3 cut(s) 1627, 1680, 1704
BbsI GAAGAC 2 cut(s) 810, 1077
Bbv12I GWGCWC 1 cut(s) 1680
BbvI GCAGC 7 cut(s) 1107, 1247, 1250, 1253, 1603, 1660, 1711
BccI CCATC 5 cut(s) 120, 284, 1260, 1265, 1737
BciT130I CCWGG 2 cut(s) 1353, 1467
BciVI GTATCC 2 cut(s) 1188, 1533
BcoDI GTCTC 5 cut(s) 62, 136, 330, 906, 1474
BfaI CTAG 4 cut(s) 687, 1028, 1484, 1768
BfoI RGCGCY 1 cut(s) 1307
BfuI GTATCC 2 cut(s) 1188, 1533
BglII AGATCT 1 cut(s) 1750
BisI GCNGC 7 cut(s) 1121, 1236, 1239, 1242, 1617, 1649, 1725
BlpI GCTNAGC 1 cut(s) 768
BlsI GCNGC 7 cut(s) 1122, 1237, 1240, 1243, 1618, 1650, 1726
Bme1390I CCNGG 2 cut(s) 1353, 1467
Bme18I GGWCC 2 cut(s) 589, 1709
BmeT110I CYCGRG 1 cut(s) 258
BmgT120I GGNCC 5 cut(s) 589, 1153, 1700, 1701, 1709
BmiI GGNNCC 2 cut(s) 1278, 1702
BmrFI CCNGG 2 cut(s) 1353, 1467
BmrI ACTGGG 1 cut(s) 9
BmsI GCATC 5 cut(s) 202, 1054, 1531, 1555, 1603
BmtI GCTAGC 1 cut(s) 690
BmuI ACTGGG 1 cut(s) 9
BoxI GACNNNNGTC 1 cut(s) 722
BpiI GAAGAC 2 cut(s) 810, 1077
BpmI CTGGAG 1 cut(s) 354
Bpu10I CCTNAGC 2 cut(s) 452, 1674
Bpu1102I GCTNAGC 1 cut(s) 768
BsaI GGTCTC 3 cut(s) 136, 330, 906
BsaJI CCNNGG 2 cut(s) 1351, 1465
Bsc4I CCNNNNNNNGG 3 cut(s) 832, 1162, 1472
Bse1I ACTGG 3 cut(s) 15, 76, 1052
BseBI CCWGG 2 cut(s) 1353, 1467
BseDI CCNNGG 2 cut(s) 1351, 1465
BseGI GGATG 4 cut(s) 41, 193, 676, 1276
BseLI CCNNNNNNNGG 3 cut(s) 832, 1162, 1472
BseMII CTCAG 6 cut(s) 149, 294, 390, 558, 782, 1665
BseNI ACTGG 3 cut(s) 15, 76, 1052
BseRI GAGGAG 2 cut(s) 584, 978
BseSI GKGCMC 1 cut(s) 1704
BseXI GCAGC 7 cut(s) 1107, 1247, 1250, 1253, 1603, 1660, 1711
BshFI GGCC 3 cut(s) 1114, 1155, 1702
BsiHKAI GWGCWC 1 cut(s) 1680
BsiHKCI CYCGRG 1 cut(s) 258
BslFI GGGAC 3 cut(s) 1010, 1334, 1448
BslI CCNNNNNNNGG 3 cut(s) 832, 1162, 1472
BsmAI GTCTC 5 cut(s) 62, 136, 330, 906, 1474
BsmFI GGGAC 3 cut(s) 1010, 1334, 1448
BsnI GGCC 3 cut(s) 1114, 1155, 1702
Bso31I GGTCTC 3 cut(s) 136, 330, 906
BsoBI CYCGRG 1 cut(s) 258
Bsp120I GGGCCC 1 cut(s) 1700
Bsp1286I GDGCHC 3 cut(s) 1627, 1680, 1704
Bsp1407I TGTACA 2 cut(s) 1362, 1420
Bsp143I GATC 7 cut(s) 490, 520, 1326, 1449, 1486, 1514, 1750
Bsp1720I GCTNAGC 1 cut(s) 768
BspACI CCGC 2 cut(s) 496, 592
BspANI GGCC 3 cut(s) 1114, 1155, 1702
BspCNI CTCAG 6 cut(s) 148, 293, 391, 559, 781, 1666
BspLI GGNNCC 2 cut(s) 1278, 1702
BspOI GCTAGC 1 cut(s) 690
BspPI GGATC 1 cut(s) 528
BspQI GCTCTTC 1 cut(s) 441
BspTNI GGTCTC 3 cut(s) 136, 330, 906
BsrGI TGTACA 2 cut(s) 1362, 1420
BsrI ACTGG 3 cut(s) 15, 76, 1052
BssECI CCNNGG 2 cut(s) 1351, 1465
BssMI GATC 7 cut(s) 490, 520, 1326, 1449, 1486, 1514, 1750
Bst2UI CCWGG 2 cut(s) 1353, 1467
Bst4CI ACNGT 5 cut(s) 319, 1035, 1204, 1217, 1691
Bst6I CTCTTC 2 cut(s) 441, 955
BstAPI GCANNNNNTGC 2 cut(s) 371, 1037
BstAUI TGTACA 2 cut(s) 1362, 1420
BstC8I GCNNGC 3 cut(s) 596, 688, 1320
BstF5I GGATG 4 cut(s) 41, 193, 676, 1276
BstH2I RGCGCY 1 cut(s) 1307
BstHHI GCGC 1 cut(s) 1306
BstKTI GATC 7 cut(s) 493, 523, 1329, 1452, 1489, 1517, 1753
BstMAI GTCTC 5 cut(s) 62, 136, 330, 906, 1474
BstMBI GATC 7 cut(s) 490, 520, 1326, 1449, 1486, 1514, 1750
BstMWI GCNNNNNNNGC 8 cut(s) 172, 371, 704, 1037, 1120, 1241, 1301, 1622
BstNI CCWGG 2 cut(s) 1353, 1467
BstNSI RCATGY 1 cut(s) 1349
BstPAI GACNNNNGTC 1 cut(s) 722
BstSCI CCNGG 2 cut(s) 1351, 1465
BstSLI GKGCMC 1 cut(s) 1704
BstV1I GCAGC 7 cut(s) 1107, 1247, 1250, 1253, 1603, 1660, 1711
BstV2I GAAGAC 2 cut(s) 810, 1077
BstX2I RGATCY 1 cut(s) 1750
BstYI RGATCY 1 cut(s) 1750
BsuI GTATCC 2 cut(s) 1188, 1533
BsuRI GGCC 3 cut(s) 1114, 1155, 1702
BtsCI GGATG 4 cut(s) 41, 193, 676, 1276
BtsI GCAGTG 1 cut(s) 1115
BtsIMutI CAGTG 3 cut(s) 867, 1031, 1115
Cac8I GCNNGC 3 cut(s) 596, 688, 1320
CfoI GCGC 1 cut(s) 1306
Cfr13I GGNCC 5 cut(s) 589, 1153, 1700, 1701, 1709
CseI GACGC 1 cut(s) 230
Csp6I GTAC 3 cut(s) 951, 1363, 1421
CviAII CATG 2 cut(s) 548, 1346
CviQI GTAC 3 cut(s) 951, 1363, 1421
DpnI GATC 7 cut(s) 492, 522, 1328, 1451, 1488, 1516, 1752
DpnII GATC 7 cut(s) 490, 520, 1326, 1449, 1486, 1514, 1750
DraI TTTAAA 1 cut(s) 786
Eam1104I CTCTTC 2 cut(s) 441, 955
EarI CTCTTC 2 cut(s) 441, 955
Ecl136II GAGCTC 1 cut(s) 1678
Eco24I GRGCYC 3 cut(s) 1627, 1680, 1704
Eco31I GGTCTC 3 cut(s) 136, 330, 906
Eco47I GGWCC 2 cut(s) 589, 1709
Eco47III AGCGCT 1 cut(s) 1305
Eco53kI GAGCTC 1 cut(s) 1678
Eco57I CTGAAG 5 cut(s) 687, 822, 960, 1089, 1466
Eco88I CYCGRG 1 cut(s) 258
EcoICRI GAGCTC 1 cut(s) 1678
EcoO109I RGGNCCY 1 cut(s) 1700
EcoRII CCWGG 2 cut(s) 1351, 1465
EcoT22I ATGCAT 1 cut(s) 1546
EcoT38I GRGCYC 3 cut(s) 1627, 1680, 1704
FaeI CATG 2 cut(s) 551, 1349
FalI AAGNNNNNCTT 2 cut(s) 1358, 1390
FaqI GGGAC 3 cut(s) 1010, 1334, 1448
FatI CATG 2 cut(s) 547, 1345
FauI CCCGC 1 cut(s) 489
FauNDI CATATG 1 cut(s) 1546
Fnu4HI GCNGC 7 cut(s) 1121, 1236, 1239, 1242, 1617, 1649, 1725
FokI GGATG 4 cut(s) 28, 180, 683, 1283
FriOI GRGCYC 3 cut(s) 1627, 1680, 1704
Fsp4HI GCNGC 7 cut(s) 1121, 1236, 1239, 1242, 1617, 1649, 1725
FspBI CTAG 4 cut(s) 687, 1028, 1484, 1768
GlaI GCGC 1 cut(s) 1305
GluI GCNGC 7 cut(s) 1121, 1236, 1239, 1242, 1617, 1649, 1725
GsuI CTGGAG 1 cut(s) 354
HaeII RGCGCY 1 cut(s) 1307
HaeIII GGCC 3 cut(s) 1114, 1155, 1702
HgaI GACGC 1 cut(s) 230
HhaI GCGC 1 cut(s) 1306
Hin1II CATG 2 cut(s) 551, 1349
Hin6I GCGC 1 cut(s) 1304
HinP1I GCGC 1 cut(s) 1304
HinfI GANTC 8 cut(s) 139, 150, 284, 299, 752, 758, 987, 1332
HphI GGTGA 1 cut(s) 688
Hpy166II GTNNAC 2 cut(s) 717, 1421
Hpy188III TCNNGA 7 cut(s) 61, 123, 333, 529, 749, 1285, 1673
Hpy8I GTNNAC 2 cut(s) 717, 1421
HpyAV CCTTC 2 cut(s) 601, 1568
HpyCH4III ACNGT 5 cut(s) 319, 1035, 1204, 1217, 1691
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 9 cut(s) 483, 581, 925, 1006, 1021, 1235, 1544, 1568, 1727
HpyF10VI GCNNNNNNNGC 8 cut(s) 172, 371, 704, 1037, 1120, 1241, 1301, 1622
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 2 cut(s) 551, 1349
HspAI GCGC 1 cut(s) 1304
Kzo9I GATC 7 cut(s) 490, 520, 1326, 1449, 1486, 1514, 1750
LguI GCTCTTC 1 cut(s) 441
LmnI GCTCC 3 cut(s) 571, 841, 1311
Lsp1109I GCAGC 7 cut(s) 1107, 1247, 1250, 1253, 1603, 1660, 1711
LweI GCATC 5 cut(s) 202, 1054, 1531, 1555, 1603
MaeI CTAG 4 cut(s) 687, 1028, 1484, 1768
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 2 cut(s) 749, 1493
MalI GATC 7 cut(s) 492, 522, 1328, 1451, 1488, 1516, 1752
MboI GATC 7 cut(s) 490, 520, 1326, 1449, 1486, 1514, 1750
MfeI CAATTG 1 cut(s) 1569
MflI RGATCY 1 cut(s) 1750
MhlI GDGCHC 3 cut(s) 1627, 1680, 1704
MluCI AATT 9 cut(s) 305, 403, 502, 562, 584, 1337, 1357, 1501, 1569
MlyI GAGTC 2 cut(s) 746, 1341
Mph1103I ATGCAT 1 cut(s) 1546
MseI TTAA 3 cut(s) 308, 785, 1643
MslI CAYNNNNRTG 1 cut(s) 665
MspA1I CMGCKG 1 cut(s) 496
MspR9I CCNGG 2 cut(s) 1353, 1467
MunI CAATTG 1 cut(s) 1569
MvaI CCWGG 2 cut(s) 1353, 1467
MwoI GCNNNNNNNGC 8 cut(s) 172, 371, 704, 1037, 1120, 1241, 1301, 1622
NdeI CATATG 1 cut(s) 1546
NdeII GATC 7 cut(s) 490, 520, 1326, 1449, 1486, 1514, 1750
NheI GCTAGC 1 cut(s) 686
NlaIII CATG 2 cut(s) 551, 1349
NlaIV GGNNCC 2 cut(s) 1278, 1702
NmeAIII GCCGAG 1 cut(s) 1734
NmuCI GTSAC 2 cut(s) 749, 1493
NsiI ATGCAT 1 cut(s) 1546
NspI RCATGY 1 cut(s) 1349
PaeR7I CTCGAG 1 cut(s) 258
PciI ACATGT 1 cut(s) 1345
PciSI GCTCTTC 1 cut(s) 441
PfeI GAWTC 6 cut(s) 139, 150, 284, 299, 758, 987
PflMI CCANNNNNTGG 1 cut(s) 832
PkrI GCNGC 7 cut(s) 1122, 1237, 1240, 1243, 1618, 1650, 1726
PleI GAGTC 2 cut(s) 746, 1340
PpsI GAGTC 2 cut(s) 746, 1340
PscI ACATGT 1 cut(s) 1345
PshAI GACNNNNGTC 1 cut(s) 722
PsiI TTATAA 1 cut(s) 1100
Psp124BI GAGCTC 1 cut(s) 1680
Psp6I CCWGG 2 cut(s) 1351, 1465
PspGI CCWGG 2 cut(s) 1351, 1465
PspN4I GGNNCC 2 cut(s) 1278, 1702
PspOMI GGGCCC 1 cut(s) 1700
PspPI GGNCC 5 cut(s) 589, 1153, 1700, 1701, 1709
PspXI VCTCGAGB 1 cut(s) 258
PsuI RGATCY 1 cut(s) 1750
RsaI GTAC 3 cut(s) 952, 1364, 1422
RsaNI GTAC 3 cut(s) 951, 1363, 1421
RseI CAYNNNNRTG 1 cut(s) 665
SacI GAGCTC 1 cut(s) 1680
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 3 cut(s) 308, 785, 1643
SatI GCNGC 7 cut(s) 1121, 1236, 1239, 1242, 1617, 1649, 1725
Sau3AI GATC 7 cut(s) 490, 520, 1326, 1449, 1486, 1514, 1750
Sau96I GGNCC 5 cut(s) 589, 1153, 1700, 1701, 1709
SchI GAGTC 2 cut(s) 746, 1341
ScrFI CCNGG 2 cut(s) 1353, 1467
SduI GDGCHC 3 cut(s) 1627, 1680, 1704
SfaNI GCATC 5 cut(s) 202, 1054, 1531, 1555, 1603
Sfr274I CTCGAG 1 cut(s) 258
SinI GGWCC 2 cut(s) 589, 1709
SlaI CTCGAG 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 665
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
Sse9I AATT 9 cut(s) 305, 403, 502, 562, 584, 1337, 1357, 1501, 1569
SsiI CCGC 2 cut(s) 496, 592
SspI AATATT 1 cut(s) 813
SspMI CTAG 4 cut(s) 687, 1028, 1484, 1768
SstI GAGCTC 1 cut(s) 1680
StyD4I CCNGG 2 cut(s) 1351, 1465
TaaI ACNGT 5 cut(s) 319, 1035, 1204, 1217, 1691
TaiI ACGT 1 cut(s) 462
TaqI TCGA 3 cut(s) 259, 427, 1489
TaqII GACCGA 1 cut(s) 1130
TasI AATT 9 cut(s) 305, 403, 502, 562, 584, 1337, 1357, 1501, 1569
TatI WGTACW 2 cut(s) 1362, 1420
TfiI GAWTC 6 cut(s) 139, 150, 284, 299, 758, 987
Tru1I TTAA 3 cut(s) 308, 785, 1643
Tru9I TTAA 3 cut(s) 308, 785, 1643
TscAI CASTG 3 cut(s) 867, 1038, 1122
TseFI GTSAC 2 cut(s) 749, 1493
TseI GCWGC 7 cut(s) 1120, 1235, 1238, 1241, 1616, 1648, 1724
Tsp45I GTSAC 2 cut(s) 749, 1493
TspDTI ATGAA 8 cut(s) 15, 45, 399, 459, 1098, 1304, 1446, 1582
TspGWI ACGGA 1 cut(s) 1597
TspRI CASTG 3 cut(s) 867, 1038, 1122
Van91I CCANNNNNTGG 1 cut(s) 832
VpaK11BI GGWCC 2 cut(s) 589, 1709
XapI RAATTY 2 cut(s) 403, 1501
XceI RCATGY 1 cut(s) 1349
XhoI CTCGAG 1 cut(s) 258
XspI CTAG 4 cut(s) 687, 1028, 1484, 1768
Zsp2I ATGCAT 1 cut(s) 1546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.