pycom09g05030

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
3753928 .. 3757389
3462 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g05030.3

Sequence Viewer

Length: 1764 bp
ATGGCTACTCGCCTGAGTACCTGTTCATCTTCTTCAACTTCATTCCCTCCCTCTTCATTCAAAAACCAGACACCCCACTTCATAAAGTTCATCACTTTGCTCAGAGAATCCCATTCCTCCAGATGGGTTTCTCAGATTCCCCTCAGAATCCCTGCCAGAAAGCACTTTCAGCTCAAATCCTCAAATGGGCATCCGCTCAATGCTGTGTCTTTCAATGACGCTGGAAATACTCTGGGACAAGAATATACCGAGCCTCGTGGCAAAGCCTTTCCCATCTCGGATTCAGAAAATGTAGCATCTAATTTAAGCATAACCGTTGTTGGTGCTTCTGGAGACCTTGCAAAGAAGAAGATATTTCCAGCGCTTTTCGCTCTTTATTATGAAGATTGTCTACCTGAGAATTTCATGGTGTTTGGTTATGCTCGAACTCAAATGACTGATGAAGAGCTAAGGAACATGATTAGCGGAACCTTGACTTGCAGGATAGATAAGAGGGAAAATTGTGAGGACAAAATGGATCAGTTCTTGAAAAGATGCTTCTACCATGCTGGTCAATATAATTCCGAGGAAGATTTCGCAGAATTGGACAGCAAGATGATTGAGAAGGAGGCCGGAAGCAAGTCAAATAGGTTGTTTTACTTATCAATACCTCCAAACATATTTGTGGATGTGGTCAGATGTGCTAGCGTTAAAGCTTCTTCCGCGAATGGGTGGACGAGGGTAATTGTTGAGAAGCCATTCGGTCGTGATTCTGAATCATCTGCGGAGCTAACCAAATGTTTAAAGCAATACCTTGCTGAAGACCAAATATTTAGGATTGACCATTACTTGGGCAAGGAACTTGTCGAGAATCTATCGGTGCTTCGCTTCTCAAATCTTGTTTTTGAGCCTGTCTGGTCTCGTAACTACATTCGTAATGTGCAACTGATATTTTCTGAAGATTTTGGCACAGAGGGAAGAGGAGGATATTTTGACAAGTATGGAATCATTCGGGACATAATGCAAAACCATCTTCTGCAAATATTAGCACTGTTTGCTATGGAAACACCAGTCAGCCTAGATGCTGAAGACATTAGGAACGAAAAGGTAAAGGTTCTACGGTCAATGAGGCCACTGCTGCTTGAAGATGTAGTCATTGGTCAATACAAGGGTCACAGCAAGGGCAGCAAATTGTATCCTGCTTATATAGACGACCCAACTGTGCCAAAAGACAGCCTCACCCCTACATTTGCCGCAGCAGCTCTCTTTATTGACAATGCCAGATGGGATGGAGTTCCTTTCTTGATGAAAGCAGGAAAGGCTCTCCATACTAAGCGAGCAGAGATCAGAGTGCAATTCAGACATGTTCCGGGAAACTTGTATAAGAGGAACTTTGGAACCGATTTAGATAAGGCTACAAATGAGCTTGTGCTTCGTGTACAACCTGATGAAGCCATATATCTGAAGATCAACAACAAAGTCCCTGGTCTTGGAATGAGACTGGATCGAAGTGACCTGAATTTGCTTTACCGATCAAGGTATCCAAAAGAAATACCAGATGCATATGAGAGGCTACTCCTAGATGCAATTGAAGGGGAACGAAGGTTGTTCATTAGAAGTGACGAGCTGGATGCTGCTTGGTCACTATTCACACCATTGTTGAAGGAGCTTGAACAGAAGAAGATTGTTCCCGAGCTCTACCCCTACGGCAGTAGAGGACCTGTAGGACCGCATTATCTTGCTGCGAAGCACAATGTCAGGTGGGGTGATCTCAGTGATGATTGA

Protein Analysis

588

Amino Acids

66.87

Weight (kDa)

7.99

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 829
AccBSI CCGCTC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 391
AccII CGCG 1 cut(s) 704
AciI CCGC 6 cut(s) 194, 465, 702, 764, 1233, 1709
AclWI GGATC 2 cut(s) 525, 1491
AcsI RAATTY 2 cut(s) 400, 1498
AcuI CTGAAG 4 cut(s) 819, 957, 1086, 1463
AfaI GTAC 2 cut(s) 19, 1419
AfeI AGCGCT 1 cut(s) 363
AfiI CCNNNNNNNGG 5 cut(s) 123, 186, 708, 829, 1469
AflIII ACRYGT 1 cut(s) 1342
AgsI TTSAA 8 cut(s) 36, 61, 214, 529, 1124, 1571, 1642, 1652
AjnI CCWGG 1 cut(s) 1462
AluBI AGCT 9 cut(s) 172, 448, 695, 769, 1241, 1405, 1606, 1648, 1675
AluI AGCT 9 cut(s) 172, 448, 695, 769, 1241, 1405, 1606, 1648, 1675
Alw21I GWGCWC 1 cut(s) 1677
Alw26I GTCTC 3 cut(s) 327, 903, 1471
AlwI GGATC 2 cut(s) 525, 1491
Ama87I CYCGRG 1 cut(s) 1670
Aor51HI AGCGCT 1 cut(s) 363
AoxI GGCC 2 cut(s) 609, 1109
ApeKI GCWGC 6 cut(s) 1117, 1164, 1235, 1238, 1613, 1721
ApoI RAATTY 2 cut(s) 400, 1498
Asp700I GAANNNNTTC 1 cut(s) 737
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 2 cut(s) 1697, 1706
AsuC2I CCSGG 1 cut(s) 1350
AsuHPI GGTGA 2 cut(s) 1210, 1757
AsuNHI GCTAGC 1 cut(s) 683
AvaI CYCGRG 1 cut(s) 1670
AvaII GGWCC 2 cut(s) 1697, 1706
BanII GRGCYC 1 cut(s) 1677
BarI GAAGNNNNNNTAC 2 cut(s) 375, 407
BauI CACGAG 1 cut(s) 255
BbsI GAAGAC 2 cut(s) 807, 1074
Bbv12I GWGCWC 1 cut(s) 1677
BbvI GCAGC 6 cut(s) 1104, 1176, 1247, 1250, 1600, 1708
BccI CCATC 5 cut(s) 117, 281, 1017, 1257, 1262
BceAI ACGGC 1 cut(s) 1702
BcgI CGANNNNNNTGC 2 cut(s) 1592, 1626
BciT130I CCWGG 1 cut(s) 1464
BciVI GTATCC 2 cut(s) 1185, 1530
BcnI CCSGG 1 cut(s) 1350
BcoDI GTCTC 3 cut(s) 327, 903, 1471
BfaI CTAG 3 cut(s) 684, 1058, 1559
BfmI CTRYAG 1 cut(s) 1701
BfoI RGCGCY 1 cut(s) 365
BfuI GTATCC 2 cut(s) 1185, 1530
BisI GCNGC 7 cut(s) 1118, 1165, 1233, 1236, 1239, 1614, 1722
BlsI GCNGC 7 cut(s) 1119, 1166, 1234, 1237, 1240, 1615, 1723
Bme1390I CCNGG 2 cut(s) 1350, 1464
Bme18I GGWCC 2 cut(s) 1697, 1706
BmeT110I CYCGRG 1 cut(s) 1670
BmgT120I GGNCC 2 cut(s) 1697, 1706
BmiI GGNNCC 2 cut(s) 469, 1378
BmrFI CCNGG 2 cut(s) 1350, 1464
BmsI GCATC 7 cut(s) 199, 305, 524, 1051, 1528, 1552, 1600
BmtI GCTAGC 1 cut(s) 687
BpiI GAAGAC 2 cut(s) 807, 1074
BpmI CTGGAG 2 cut(s) 103, 351
Bpu10I CCTNAGC 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 1350
BsaI GGTCTC 2 cut(s) 327, 903
BsaJI CCNNGG 2 cut(s) 564, 1462
Bsc4I CCNNNNNNNGG 5 cut(s) 123, 186, 708, 829, 1469
Bse1I ACTGG 2 cut(s) 1049, 1485
BseBI CCWGG 1 cut(s) 1464
BseDI CCNNGG 2 cut(s) 564, 1462
BseGI GGATG 4 cut(s) 190, 673, 1273, 1615
BseLI CCNNNNNNNGG 5 cut(s) 123, 186, 708, 829, 1469
BseMII CTCAG 5 cut(s) 5, 115, 146, 157, 387
BseNI ACTGG 2 cut(s) 1049, 1485
BseRI GAGGAG 1 cut(s) 975
BseXI GCAGC 6 cut(s) 1104, 1176, 1247, 1250, 1600, 1708
Bsh1236I CGCG 1 cut(s) 704
Bsh1285I CGRYCG 1 cut(s) 745
BshFI GGCC 2 cut(s) 611, 1111
BsiEI CGRYCG 1 cut(s) 745
BsiHKAI GWGCWC 1 cut(s) 1677
BsiHKCI CYCGRG 1 cut(s) 1670
BsiSI CCGG 2 cut(s) 612, 1349
BslFI GGGAC 3 cut(s) 249, 1007, 1445
BslI CCNNNNNNNGG 5 cut(s) 123, 186, 708, 829, 1469
BsmAI GTCTC 3 cut(s) 327, 903, 1471
BsmFI GGGAC 3 cut(s) 249, 1007, 1445
BsnI GGCC 2 cut(s) 611, 1111
Bso31I GGTCTC 2 cut(s) 327, 903
BsoBI CYCGRG 1 cut(s) 1670
Bsp1286I GDGCHC 1 cut(s) 1677
Bsp1407I TGTACA 1 cut(s) 1417
Bsp143I GATC 6 cut(s) 517, 1323, 1446, 1483, 1511, 1747
BspACI CCGC 6 cut(s) 194, 465, 702, 764, 1233, 1709
BspANI GGCC 2 cut(s) 611, 1111
BspCNI CTCAG 6 cut(s) 6, 114, 145, 156, 388, 1764
BspFNI CGCG 1 cut(s) 704
BspLI GGNNCC 2 cut(s) 469, 1378
BspOI GCTAGC 1 cut(s) 687
BspPI GGATC 2 cut(s) 525, 1491
BspQI GCTCTTC 1 cut(s) 438
BspTNI GGTCTC 2 cut(s) 327, 903
BsrBI CCGCTC 1 cut(s) 196
BsrGI TGTACA 1 cut(s) 1417
BsrI ACTGG 2 cut(s) 1049, 1485
BssECI CCNNGG 2 cut(s) 564, 1462
BssMI GATC 6 cut(s) 517, 1323, 1446, 1483, 1511, 1747
BssSI CACGAG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 1464
Bst4CI ACNGT 4 cut(s) 316, 1032, 1101, 1201
Bst6I CTCTTC 3 cut(s) 58, 438, 952
BstAPI GCANNNNNTGC 1 cut(s) 1034
BstAUI TGTACA 1 cut(s) 1417
BstC8I GCNNGC 2 cut(s) 685, 1317
BstDEI CTNAG 8 cut(s) 14, 101, 132, 143, 396, 449, 1311, 1751
BstF5I GGATG 4 cut(s) 190, 673, 1273, 1615
BstFNI CGCG 1 cut(s) 704
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 6 cut(s) 520, 1326, 1449, 1486, 1514, 1750
BstMAI GTCTC 3 cut(s) 327, 903, 1471
BstMBI GATC 6 cut(s) 517, 1323, 1446, 1483, 1511, 1747
BstMCI CGRYCG 1 cut(s) 745
BstMWI GCNNNNNNNGC 8 cut(s) 169, 368, 701, 1034, 1117, 1164, 1238, 1298
BstNI CCWGG 1 cut(s) 1464
BstNSI RCATGY 1 cut(s) 1346
BstSCI CCNGG 2 cut(s) 1348, 1462
BstSFI CTRYAG 1 cut(s) 1701
BstUI CGCG 1 cut(s) 704
BstV1I GCAGC 6 cut(s) 1104, 1176, 1247, 1250, 1600, 1708
BstV2I GAAGAC 2 cut(s) 807, 1074
BsuI GTATCC 2 cut(s) 1185, 1530
BsuRI GGCC 2 cut(s) 611, 1111
BtsCI GGATG 4 cut(s) 190, 673, 1273, 1615
BtsI GCAGTG 1 cut(s) 1112
BtsIMutI CAGTG 3 cut(s) 1028, 1112, 1759
Cac8I GCNNGC 2 cut(s) 685, 1317
CfoI GCGC 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 1697, 1706
CseI GACGC 1 cut(s) 227
Csp6I GTAC 2 cut(s) 18, 1418
CviAII CATG 4 cut(s) 406, 457, 545, 1343
CviQI GTAC 2 cut(s) 18, 1418
DdeI CTNAG 8 cut(s) 14, 101, 132, 143, 396, 449, 1311, 1751
DpnI GATC 6 cut(s) 519, 1325, 1448, 1485, 1513, 1749
DpnII GATC 6 cut(s) 517, 1323, 1446, 1483, 1511, 1747
DraI TTTAAA 1 cut(s) 783
Eam1104I CTCTTC 3 cut(s) 58, 438, 952
EarI CTCTTC 3 cut(s) 58, 438, 952
Ecl136II GAGCTC 1 cut(s) 1675
Eco24I GRGCYC 1 cut(s) 1677
Eco31I GGTCTC 2 cut(s) 327, 903
Eco47I GGWCC 2 cut(s) 1697, 1706
Eco47III AGCGCT 1 cut(s) 363
Eco53kI GAGCTC 1 cut(s) 1675
Eco57I CTGAAG 4 cut(s) 819, 957, 1086, 1463
Eco88I CYCGRG 1 cut(s) 1670
EcoICRI GAGCTC 1 cut(s) 1675
EcoO109I RGGNCCY 1 cut(s) 1697
EcoRII CCWGG 1 cut(s) 1462
EcoT22I ATGCAT 1 cut(s) 1543
EcoT38I GRGCYC 1 cut(s) 1677
FaeI CATG 4 cut(s) 409, 460, 548, 1346
FalI AAGNNNNNCTT 2 cut(s) 1355, 1387
FaqI GGGAC 3 cut(s) 249, 1007, 1445
FatI CATG 4 cut(s) 405, 456, 544, 1342
FauNDI CATATG 1 cut(s) 1543
FblI GTMKAC 1 cut(s) 391
Fnu4HI GCNGC 7 cut(s) 1118, 1165, 1233, 1236, 1239, 1614, 1722
FokI GGATG 4 cut(s) 177, 680, 1280, 1622
FriOI GRGCYC 1 cut(s) 1677
Fsp4HI GCNGC 7 cut(s) 1118, 1165, 1233, 1236, 1239, 1614, 1722
FspBI CTAG 3 cut(s) 684, 1058, 1559
GlaI GCGC 1 cut(s) 363
GluI GCNGC 7 cut(s) 1118, 1165, 1233, 1236, 1239, 1614, 1722
GsuI CTGGAG 2 cut(s) 103, 351
HaeII RGCGCY 1 cut(s) 365
HaeIII GGCC 2 cut(s) 611, 1111
HapII CCGG 2 cut(s) 612, 1349
HgaI GACGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 364
Hin1II CATG 4 cut(s) 409, 460, 548, 1346
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HindIII AAGCTT 1 cut(s) 693
HinfI GANTC 8 cut(s) 107, 136, 147, 281, 749, 755, 850, 984
HpaII CCGG 2 cut(s) 612, 1349
HphI GGTGA 2 cut(s) 1210, 1757
Hpy166II GTNNAC 3 cut(s) 392, 714, 1418
Hpy188III TCNNGA 8 cut(s) 120, 330, 526, 746, 847, 992, 1282, 1670
Hpy8I GTNNAC 3 cut(s) 392, 714, 1418
HpyAV CCTTC 4 cut(s) 598, 1565, 1575, 1636
HpyCH4III ACNGT 4 cut(s) 316, 1032, 1101, 1201
HpyCH4V TGCA 8 cut(s) 341, 480, 922, 1003, 1018, 1333, 1541, 1565
HpyF10VI GCNNNNNNNGC 8 cut(s) 169, 368, 701, 1034, 1117, 1164, 1238, 1298
HpyF3I CTNAG 8 cut(s) 14, 101, 132, 143, 396, 449, 1311, 1751
Hsp92II CATG 4 cut(s) 409, 460, 548, 1346
HspAI GCGC 1 cut(s) 362
Kzo9I GATC 6 cut(s) 517, 1323, 1446, 1483, 1511, 1747
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 2 cut(s) 766, 1645
Lsp1109I GCAGC 6 cut(s) 1104, 1176, 1247, 1250, 1600, 1708
LweI GCATC 7 cut(s) 199, 305, 524, 1051, 1528, 1552, 1600
MaeI CTAG 3 cut(s) 684, 1058, 1559
MaeIII GTNAC 5 cut(s) 902, 1151, 1490, 1598, 1620
MalI GATC 6 cut(s) 519, 1325, 1448, 1485, 1513, 1749
MbiI CCGCTC 1 cut(s) 196
MboI GATC 6 cut(s) 517, 1323, 1446, 1483, 1511, 1747
MfeI CAATTG 1 cut(s) 1566
MhlI GDGCHC 1 cut(s) 1677
Mph1103I ATGCAT 1 cut(s) 1543
MroXI GAANNNNTTC 1 cut(s) 737
MseI TTAA 3 cut(s) 305, 690, 782
MslI CAYNNNNRTG 1 cut(s) 662
MspI CCGG 2 cut(s) 612, 1349
MspR9I CCNGG 2 cut(s) 1350, 1464
MunI CAATTG 1 cut(s) 1566
MvaI CCWGG 1 cut(s) 1464
MvnI CGCG 1 cut(s) 704
MwoI GCNNNNNNNGC 8 cut(s) 169, 368, 701, 1034, 1117, 1164, 1238, 1298
NciI CCSGG 1 cut(s) 1350
NdeI CATATG 1 cut(s) 1543
NdeII GATC 6 cut(s) 517, 1323, 1446, 1483, 1511, 1747
NheI GCTAGC 1 cut(s) 683
NlaIII CATG 4 cut(s) 409, 460, 548, 1346
NlaIV GGNNCC 2 cut(s) 469, 1378
NmuCI GTSAC 4 cut(s) 1151, 1490, 1598, 1620
NsiI ATGCAT 1 cut(s) 1543
NspI RCATGY 1 cut(s) 1346
PciI ACATGT 1 cut(s) 1342
PciSI GCTCTTC 1 cut(s) 438
PdmI GAANNNNTTC 1 cut(s) 737
PfeI GAWTC 8 cut(s) 107, 136, 147, 281, 749, 755, 850, 984
PflMI CCANNNNNTGG 1 cut(s) 829
PfoI TCCNGGA 1 cut(s) 1348
PkrI GCNGC 7 cut(s) 1119, 1166, 1234, 1237, 1240, 1615, 1723
PpuMI RGGWCCY 1 cut(s) 1697
PscI ACATGT 1 cut(s) 1342
Psp124BI GAGCTC 1 cut(s) 1677
Psp5II RGGWCCY 1 cut(s) 1697
Psp6I CCWGG 1 cut(s) 1462
PspGI CCWGG 1 cut(s) 1462
PspN4I GGNNCC 2 cut(s) 469, 1378
PspPI GGNCC 2 cut(s) 1697, 1706
PspPPI RGGWCCY 1 cut(s) 1697
RsaI GTAC 2 cut(s) 19, 1419
RsaNI GTAC 2 cut(s) 18, 1418
RseI CAYNNNNRTG 1 cut(s) 662
SacI GAGCTC 1 cut(s) 1677
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 3 cut(s) 305, 690, 782
SatI GCNGC 7 cut(s) 1118, 1165, 1233, 1236, 1239, 1614, 1722
Sau3AI GATC 6 cut(s) 517, 1323, 1446, 1483, 1511, 1747
Sau96I GGNCC 2 cut(s) 1697, 1706
ScrFI CCNGG 2 cut(s) 1350, 1464
SduI GDGCHC 1 cut(s) 1677
SfaNI GCATC 7 cut(s) 199, 305, 524, 1051, 1528, 1552, 1600
SfcI CTRYAG 1 cut(s) 1701
SinI GGWCC 2 cut(s) 1697, 1706
SmiMI CAYNNNNRTG 1 cut(s) 662
SsiI CCGC 6 cut(s) 194, 465, 702, 764, 1233, 1709
SspI AATATT 2 cut(s) 810, 1023
SspMI CTAG 3 cut(s) 684, 1058, 1559
SstI GAGCTC 1 cut(s) 1677
StyD4I CCNGG 2 cut(s) 1348, 1462
TaaI ACNGT 4 cut(s) 316, 1032, 1101, 1201
TaqI TCGA 3 cut(s) 424, 846, 1486
TaqII GACCGA 1 cut(s) 731
TatI WGTACW 1 cut(s) 1417
TauI GCSGC 1 cut(s) 1235
TfiI GAWTC 8 cut(s) 107, 136, 147, 281, 749, 755, 850, 984
Tru1I TTAA 3 cut(s) 305, 690, 782
Tru9I TTAA 3 cut(s) 305, 690, 782
TscAI CASTG 3 cut(s) 1035, 1119, 1759
TseFI GTSAC 4 cut(s) 1151, 1490, 1598, 1620
TseI GCWGC 6 cut(s) 1117, 1164, 1235, 1238, 1613, 1721
Tsp45I GTSAC 4 cut(s) 1151, 1490, 1598, 1620
TspRI CASTG 3 cut(s) 1035, 1119, 1759
Van91I CCANNNNNTGG 1 cut(s) 829
VpaK11BI GGWCC 2 cut(s) 1697, 1706
XapI RAATTY 2 cut(s) 400, 1498
XceI RCATGY 1 cut(s) 1346
XmiI GTMKAC 1 cut(s) 391
XmnI GAANNNNTTC 1 cut(s) 737
XspI CTAG 3 cut(s) 684, 1058, 1559
Zsp2I ATGCAT 1 cut(s) 1543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.