Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005991

Physical Location & Seq

Genomic Coordinates Forward (+)

76740437 .. 76743853

Gene Structure 3417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG537600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGAATCAATTCTTAAAGAGATGCTTTTACCATTCGGGTCAGTATAGCTCGGAGGAGCACTTTTTAGAGTTGGACAGCAAGCTGAGGGAGAAAGAGGCTGGAAGACGATCAAATAGACTGTTTTACTTGGCAATACCCCCAGATGTGTTTGTGGATGCAACTAGATGTGCTAAACATCGTGCTTCTTCAGAAAATGGATGGACTCGTGTCATTATTGAAAAGCCATTTGGTCGTGATACAGAGTCATCCAGAGAGCTGACCAGAACTTTAAAACAATATCTAACCGAGGATCAAATATTCAGAATTGACCATCAGTTGGGTGAGGAACTGGTGGAGAATCTCTTGGCACTTCGTTTCTCAAACCTGGTTTTTGAGCCTTTGTGGTCCAGGAACTACATCCGCAGTGTGCAGCTGATTTTTTCTGAAGACTTTGGGGTAGAAGGGAGAGGCAGATACTTTGAAAATTATGGTATCATCCGGGATATAATGCAAAACCATCTCCTTCAAATATTGTCATTGTTTGCAATGGACACACCTGTCAGCTTAGATGCTGAAGATATACGGAATGAAAAGGTTAAGGTTTTACGTTCCATTAAACCTGTTGAACTCAAAGATGTCATTGTGGGTCAATATAAGCGCCATTGCGAGGGGAATGTTTGCTATCCTGCTTATACTGATGATCCAACTGTTTCAAATGATAGCCTCACACCAACTTTTGCAGCCGCTACTATGTTTATTAATAATTCACGATGGGATGGAGTTCCAATCATGCTGGTAGCTGGCAAGGCTCTTCAGTCAAAACGAGCGGAAATCAGAGTTCAATTTAGACATGTCCCGGGAAACTTGTATAATCGAAACTCTGGAACTGACTTGGATAAGGCTACAAATGAGCTTGTGCTTCGTATACAACCTGAAGAAGCTATCTATCTGAAGGTTAACAACAAGGTTCCTGGACTTGGAATGAAGCTGGACCGTAGTGACCTTAATTTGCTGTATAAATCAAGGTATCCAAGAGAGTTCCCAGATGCATATGAGAGGCTGCTTTTAGATGCAATGAAAGGAGAGCGACGATCATTTATTAGAAGCGATGAGCTTGAAGCAGCTTGGGCAGTATTCACTCCATTGTTGAAGGAATTGGAAGAGAAGAAGGTTGTGCCAGAGCTATACAGCTATGGTAGCAGTGGACCTGTCGGAGTGCATTATCTTGCTGCAGAGCACAATGTTAGATTAGGAGATTTTGGTTACGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

417

Amino Acids

48.2

Weight (kDa)

6.21

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_N	PF00479	1 - 113	2.1e-34	Glucose-6-phosphate dehydrogenase, NAD binding domain
G6PD_C	PF02781	115 - 407	1.3e-108	Glucose-6-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35790
fragaria_vesca	FvH4_6g40584 FvH4_6g40710
malus_domestica	MD09G1126100.v1.1
prunus_persica	Prupe.3G198600_v2.0.a1
pyrus_communis	pycom09g05030
rosa_chinensis	RchiOBHm_Chr2g0155901 RchiOBHm_Chr2g0156161
rosa_laevigata	RLG00000020874 RLG00000020891
rosa_multiflora	Rmu_sc0000260.1_g000016 Rmu_sc0003417.1_g000025
rosa_roxburghii	Rroxscaffold_2G00093200 Rroxscaffold_2G00093410
rosa_rugosa	Rorug02G0450700 Rorug02G0452000 Rorug02G0452000
rosa_samantha	Rh2AG517300 Rh2AG518600 Rh2BG528500 Rh2BG529900 Rh2CG502000 Rh2CG503600 Rh2DG537600 Rh2DG539000
rosa_wichuraiana	Rw2G042580 Rw2G042710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	536
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccBSI	CCGCTC	1 cut(s)	806
AccI	GTMKAC	1 cut(s)	904
AciI	CCGC	3 cut(s)	400, 723, 806
AclWI	GGATC	2 cut(s)	297, 674
AcuI	CTGAAG	6 cut(s)	171, 444, 573, 776, 933, 950
AfiI	CCNNNNNNNGG	3 cut(s)	316, 646, 956
AflIII	ACRYGT	1 cut(s)	829
AgsI	TTSAA	8 cut(s)	218, 461, 506, 605, 693, 821, 1097, 1129
AjnI	CCWGG	3 cut(s)	363, 386, 949
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
Alw21I	GWGCWC	2 cut(s)	60, 1218
AlwI	GGATC	2 cut(s)	297, 674
Ama87I	CYCGRG	1 cut(s)	835
ApeKI	GCWGC	5 cut(s)	409, 719, 1039, 1100, 1208
AseI	ATTAAT	1 cut(s)	738
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	639
AspS9I	GGNCC	3 cut(s)	384, 970, 1184
AsuC2I	CCSGG	3 cut(s)	479, 836, 837
AsuHPI	GGTGA	1 cut(s)	332
AvaI	CYCGRG	1 cut(s)	835
AvaII	GGWCC	3 cut(s)	384, 970, 1184
BauI	CACGAG	1 cut(s)	204
BbsI	GAAGAC	2 cut(s)	109, 432
Bbv12I	GWGCWC	2 cut(s)	60, 1218
BbvCI	CCTCAGC	1 cut(s)	83
BbvI	GCAGC	5 cut(s)	421, 731, 1026, 1112, 1195
BccI	CCATC	5 cut(s)	192, 318, 504, 744, 749
BciT130I	CCWGG	3 cut(s)	365, 388, 951
BciVI	GTATCC	1 cut(s)	1017
BcnI	CCSGG	3 cut(s)	479, 836, 837
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	1209
BfoI	RGCGCY	1 cut(s)	640
BfuI	GTATCC	1 cut(s)	1017
BisI	GCNGC	6 cut(s)	410, 720, 723, 1040, 1101, 1209
BlsI	GCNGC	6 cut(s)	411, 721, 724, 1041, 1102, 1210
Bme1390I	CCNGG	6 cut(s)	365, 388, 479, 836, 837, 951
Bme18I	GGWCC	3 cut(s)	384, 970, 1184
BmeT110I	CYCGRG	1 cut(s)	835
BmgT120I	GGNCC	3 cut(s)	384, 970, 1184
BmiI	GGNNCC	1 cut(s)	948
BmrFI	CCNGG	6 cut(s)	365, 388, 479, 836, 837, 951
BmsI	GCATC	5 cut(s)	11, 145, 538, 1015, 1039
BoxI	GACNNNNGTC	1 cut(s)	206
BpiI	GAAGAC	2 cut(s)	109, 432
Bpu10I	CCTNAGC	1 cut(s)	83
BpuMI	CCSGG	3 cut(s)	479, 836, 837
BsaJI	CCNNGG	2 cut(s)	285, 835
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 646, 956
Bse1I	ACTGG	1 cut(s)	333
Bse3DI	GCAATG	3 cut(s)	531, 640, 1059
BseBI	CCWGG	3 cut(s)	365, 388, 951
BseDI	CCNNGG	2 cut(s)	285, 835
BseGI	GGATG	6 cut(s)	160, 203, 245, 396, 474, 760
BseLI	CCNNNNNNNGG	3 cut(s)	316, 646, 956
BseMI	GCAATG	3 cut(s)	531, 640, 1059
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	5 cut(s)	421, 731, 1026, 1112, 1195
BsgI	GTGCAG	1 cut(s)	428
BsiHKAI	GWGCWC	2 cut(s)	60, 1218
BsiHKCI	CYCGRG	1 cut(s)	835
BsiSI	CCGG	2 cut(s)	478, 836
BslFI	GGGAC	1 cut(s)	818
BslI	CCNNNNNNNGG	3 cut(s)	316, 646, 956
BsmFI	GGGAC	1 cut(s)	818
BsoBI	CYCGRG	1 cut(s)	835
Bsp1286I	GDGCHC	2 cut(s)	60, 1218
Bsp143I	GATC	4 cut(s)	107, 289, 679, 1070
BspACI	CCGC	3 cut(s)	400, 723, 806
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	948
BspMAI	CTGCAG	1 cut(s)	1213
BspPI	GGATC	2 cut(s)	297, 674
BspQI	GCTCTTC	1 cut(s)	795
BsrBI	CCGCTC	1 cut(s)	806
BsrDI	GCAATG	3 cut(s)	531, 640, 1059
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	285, 835
BssMI	GATC	4 cut(s)	107, 289, 679, 1070
BssNAI	GTATAC	1 cut(s)	905
BssSI	CACGAG	1 cut(s)	204
Bst1107I	GTATAC	1 cut(s)	905
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	3 cut(s)	365, 388, 951
Bst4CI	ACNGT	3 cut(s)	120, 688, 974
Bst6I	CTCTTC	2 cut(s)	795, 1134
BstC8I	GCNNGC	2 cut(s)	80, 781
BstDEI	CTNAG	2 cut(s)	83, 544
BstF5I	GGATG	6 cut(s)	160, 203, 245, 396, 474, 760
BstH2I	RGCGCY	1 cut(s)	640
BstHHI	GCGC	1 cut(s)	639
BstKTI	GATC	4 cut(s)	110, 292, 682, 1073
BstMBI	GATC	4 cut(s)	107, 289, 679, 1070
BstMWI	GCNNNNNNNGC	3 cut(s)	785, 1106, 1176
BstNI	CCWGG	3 cut(s)	365, 388, 951
BstNSI	RCATGY	1 cut(s)	833
BstPAI	GACNNNNGTC	1 cut(s)	206
BstSCI	CCNGG	6 cut(s)	363, 386, 477, 834, 835, 949
BstSFI	CTRYAG	1 cut(s)	1209
BstV1I	GCAGC	5 cut(s)	421, 731, 1026, 1112, 1195
BstV2I	GAAGAC	2 cut(s)	109, 432
BstZ17I	GTATAC	1 cut(s)	905
BsuI	GTATCC	1 cut(s)	1017
BtgZI	GCGATG	1 cut(s)	1101
BtsCI	GGATG	6 cut(s)	160, 203, 245, 396, 474, 760
BtsI	GCAGTG	2 cut(s)	409, 1186
BtsIMutI	CAGTG	2 cut(s)	409, 1186
Cac8I	GCNNGC	2 cut(s)	80, 781
CfoI	GCGC	1 cut(s)	639
Cfr13I	GGNCC	3 cut(s)	384, 970, 1184
Cfr9I	CCCGGG	1 cut(s)	835
CsiI	ACCWGGT	1 cut(s)	363
CviAII	CATG	2 cut(s)	769, 830
DdeI	CTNAG	2 cut(s)	83, 544
DpnI	GATC	4 cut(s)	109, 291, 681, 1072
DpnII	GATC	4 cut(s)	107, 289, 679, 1070
DraI	TTTAAA	1 cut(s)	270
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
Eam1104I	CTCTTC	2 cut(s)	795, 1134
EarI	CTCTTC	2 cut(s)	795, 1134
Eco47I	GGWCC	3 cut(s)	384, 970, 1184
Eco57I	CTGAAG	6 cut(s)	171, 444, 573, 776, 933, 950
Eco88I	CYCGRG	1 cut(s)	835
EcoRII	CCWGG	3 cut(s)	363, 386, 949
EcoT22I	ATGCAT	1 cut(s)	1030
FaeI	CATG	2 cut(s)	772, 833
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	1 cut(s)	818
FatI	CATG	2 cut(s)	768, 829
FauNDI	CATATG	1 cut(s)	1030
FblI	GTMKAC	1 cut(s)	904
Fnu4HI	GCNGC	6 cut(s)	410, 720, 723, 1040, 1101, 1209
FokI	GGATG	6 cut(s)	167, 210, 232, 383, 461, 767
Fsp4HI	GCNGC	6 cut(s)	410, 720, 723, 1040, 1101, 1209
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	1 cut(s)	638
GluI	GCNGC	6 cut(s)	410, 720, 723, 1040, 1101, 1209
HaeII	RGCGCY	1 cut(s)	640
HapII	CCGG	2 cut(s)	478, 836
HhaI	GCGC	1 cut(s)	639
Hin1II	CATG	2 cut(s)	772, 833
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HincII	GTYRAC	1 cut(s)	937
HindII	GTYRAC	1 cut(s)	937
HinfI	GANTC	4 cut(s)	4, 202, 242, 337
HpaI	GTTAAC	1 cut(s)	937
HpaII	CCGG	2 cut(s)	478, 836
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	3 cut(s)	905, 937, 1184
Hpy188I	TCNGA	7 cut(s)	52, 190, 302, 424, 815, 930, 1193
Hpy188III	TCNNGA	4 cut(s)	233, 249, 747, 861
Hpy8I	GTNNAC	3 cut(s)	905, 937, 1184
Hpy99I	CGWCG	1 cut(s)	1071
HpyAV	CCTTC	5 cut(s)	434, 512, 925, 1123, 1141
HpyCH4III	ACNGT	3 cut(s)	120, 688, 974
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	9 cut(s)	158, 409, 490, 524, 719, 1028, 1052, 1198, 1211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	785, 1106, 1176
HpyF3I	CTNAG	2 cut(s)	83, 544
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	2 cut(s)	772, 833
HspAI	GCGC	1 cut(s)	637
KspAI	GTTAAC	1 cut(s)	937
Kzo9I	GATC	4 cut(s)	107, 289, 679, 1070
LguI	GCTCTTC	1 cut(s)	795
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	5 cut(s)	421, 731, 1026, 1112, 1195
LweI	GCATC	5 cut(s)	11, 145, 538, 1015, 1039
MabI	ACCWGGT	1 cut(s)	363
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	2 cut(s)	977, 1241
MalI	GATC	4 cut(s)	109, 291, 681, 1072
MbiI	CCGCTC	1 cut(s)	806
MboI	GATC	4 cut(s)	107, 289, 679, 1070
MboII	GAAGA	8 cut(s)	114, 177, 437, 566, 782, 926, 1151, 1156
MhlI	GDGCHC	2 cut(s)	60, 1218
MluCI	AATT	7 cut(s)	8, 303, 463, 742, 821, 985, 1133
MlyI	GAGTC	2 cut(s)	196, 251
MmeI	TCCRAC	3 cut(s)	51, 707, 1171
MnlI	CCTC	9 cut(s)	46, 78, 88, 280, 316, 440, 640, 713, 1029
Mph1103I	ATGCAT	1 cut(s)	1030
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	7 cut(s)	14, 269, 576, 594, 738, 936, 984
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	2 cut(s)	478, 836
MspR9I	CCNGG	6 cut(s)	365, 388, 479, 836, 837, 951
MvaI	CCWGG	3 cut(s)	365, 388, 951
MwoI	GCNNNNNNNGC	3 cut(s)	785, 1106, 1176
NciI	CCSGG	3 cut(s)	479, 836, 837
NdeI	CATATG	1 cut(s)	1030
NdeII	GATC	4 cut(s)	107, 289, 679, 1070
NlaIII	CATG	2 cut(s)	772, 833
NlaIV	GGNNCC	1 cut(s)	948
NmuCI	GTSAC	1 cut(s)	977
NsiI	ATGCAT	1 cut(s)	1030
NspI	RCATGY	1 cut(s)	833
PciI	ACATGT	1 cut(s)	829
PciSI	GCTCTTC	1 cut(s)	795
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	4, 337
PflMI	CCANNNNNTGG	1 cut(s)	316
PfoI	TCCNGGA	3 cut(s)	386, 477, 949
PkrI	GCNGC	6 cut(s)	411, 721, 724, 1041, 1102, 1210
PleI	GAGTC	2 cut(s)	196, 250
PpsI	GAGTC	2 cut(s)	196, 250
PscI	ACATGT	1 cut(s)	829
PshAI	GACNNNNGTC	1 cut(s)	206
PshBI	ATTAAT	1 cut(s)	738
Psp6I	CCWGG	3 cut(s)	363, 386, 949
PspGI	CCWGG	3 cut(s)	363, 386, 949
PspN4I	GGNNCC	1 cut(s)	948
PspPI	GGNCC	3 cut(s)	384, 970, 1184
PstI	CTGCAG	1 cut(s)	1213
PvuII	CAGCTG	1 cut(s)	412
SapI	GCTCTTC	1 cut(s)	795
SaqAI	TTAA	7 cut(s)	14, 269, 576, 594, 738, 936, 984
SatI	GCNGC	6 cut(s)	410, 720, 723, 1040, 1101, 1209
Sau3AI	GATC	4 cut(s)	107, 289, 679, 1070
Sau96I	GGNCC	3 cut(s)	384, 970, 1184
SchI	GAGTC	2 cut(s)	196, 251
ScrFI	CCNGG	6 cut(s)	365, 388, 479, 836, 837, 951
SduI	GDGCHC	2 cut(s)	60, 1218
SexAI	ACCWGGT	1 cut(s)	363
SfaNI	GCATC	5 cut(s)	11, 145, 538, 1015, 1039
SfcI	CTRYAG	1 cut(s)	1209
SinI	GGWCC	3 cut(s)	384, 970, 1184
SmaI	CCCGGG	1 cut(s)	837
Sse9I	AATT	7 cut(s)	8, 303, 463, 742, 821, 985, 1133
SsiI	CCGC	3 cut(s)	400, 723, 806
SspI	AATATT	2 cut(s)	297, 510
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	6 cut(s)	363, 386, 477, 834, 835, 949
TaaI	ACNGT	3 cut(s)	120, 688, 974
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	1 cut(s)	853
TasI	AATT	7 cut(s)	8, 303, 463, 742, 821, 985, 1133
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	2 cut(s)	4, 337
Tru1I	TTAA	7 cut(s)	14, 269, 576, 594, 738, 936, 984
Tru9I	TTAA	7 cut(s)	14, 269, 576, 594, 738, 936, 984
TscAI	CASTG	2 cut(s)	409, 1186
TseFI	GTSAC	1 cut(s)	977
TseI	GCWGC	5 cut(s)	409, 719, 1039, 1100, 1208
Tsp45I	GTSAC	1 cut(s)	977
TspDTI	ATGAA	4 cut(s)	17, 582, 977, 1070
TspGWI	ACGGA	1 cut(s)	577
TspMI	CCCGGG	1 cut(s)	835
TspRI	CASTG	2 cut(s)	409, 1186
Van91I	CCANNNNNTGG	1 cut(s)	316
VpaK11BI	GGWCC	3 cut(s)	384, 970, 1184
VspI	ATTAAT	1 cut(s)	738
XceI	RCATGY	1 cut(s)	833
XmaI	CCCGGG	1 cut(s)	835
XmiI	GTMKAC	1 cut(s)	904
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.