Rmu_sc0000260.1_g000016

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000260.1
Physical Location & Seq
Reverse (-)
51452 .. 55024
3573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000260.1_g000016.1.cds

Sequence Viewer

Length: 1764 bp
atggctgcccacctgagtccttgttcgtcttcttcagcctcattcacaccctcttcattcaagaacaagactacccacttccccaagttcatcactttgataagagaaggtcattcctccagatgggtctctcagattcgccccagaaatcggtttcagctcaaatcctcaaatgggcatccactcaatgccctgtcttttcatggcgatggaaattctgtgggccaagaacaatttgagcctcgtggcaaagagggtacctttcctgtcttagattcaaaaaatgtgggatctaagttgagcataactgttgttggtgcttctggagaccttgccaagaagaagatattcccagcactttttgctctttattatgaagattgtctacccgaggattttatagtctttggttttgctcgaactaaaatgactgatgaagagctaaggaacatgatcagcagaaccttgacttgcagaatagataagagggcaaattgtgaggacaaaatggaccagttcttgaaaagatgcttctaccattctggtctgtataattctgaggagaattttgcagaattggacatcaagctgaaagagaaggaggctggaagaaagtcaaataggctgttttacttatcaatacctccaaacatatttgtggatgtggtgagatgtgctagtcttagagcttcttcagaaaatgggtggaccagggtcattgttgagaagccatttggtcgtaactctgaatcatctgcggagctaaccagatgtttaaagcagtaccttgctgaagaccagatatttaggattgaccattacttggggaaggagcttgtcgagaatctatcagtgcttcgcttctcaaatcttgtttttgagcctgtctggtcacgtaactacattcgcaatgtgcaactgatcttttctgaagattttggcacagagggaagagggggatattttgataagtacggaatcatacgggacataatgcaaaatcatcttctgcaaatactagcactgtttgcgatggaaacaccagtcagcttagatgctgaggacatcaggaatgaaaaggtaaaggttctaagatcaatgaggccactgcagcttgaagatgtagttgttggccagtataagggccacagcaagggcggtaaatcttttcctgcttatatagatgacccaactgtgccaaacgacagtctcacccctacatttgcagcagcagctctctttattgataacgccagatgggatggagttcctttcctgatgaaagcaggaaaggccctccataccaagcgagcagagatcagagttcaatttagacatgtcccaggtaacttgtacaagcggaattttggaactgatttagataaggcgacaaatgagcttgtgctccgtgtacaacccgatgaagccatatatttgaagatcaacaacaaagtccctggtcttggaatgagactagatcgaagcaacctaaatttgctttattccgctaggtatccaagagaaataccagatgcatacgagaggctactgttagatgcaattgaaggggaacgaaggttgttcataagaagtgatgagctcgatgctgcttggtcattattcacaccattgttgaatgagcttgaacagaagaagattgttcctgagctgtacccgtacggtagcagagggccagtaggacctcattatcttgctgcaaaacacaatgttagatggggagatctcggagacgaggattcatga

Protein Analysis

587

Amino Acids

66.85

Weight (kDa)

8.7

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 823
AccI GTMKAC 1 cut(s) 385
AciI CCGC 4 cut(s) 758, 1158, 1360, 1506
AclWI GGATC 1 cut(s) 298
AcoI YGGCCR 1 cut(s) 1132
AcsI RAATTY 4 cut(s) 214, 565, 1363, 1492
AcuI CTGAAG 4 cut(s) 18, 678, 813, 951
AfaI GTAC 7 cut(s) 259, 785, 974, 1355, 1413, 1673, 1679
AfiI CCNNNNNNNGG 7 cut(s) 123, 150, 174, 823, 1141, 1153, 1463
AflIII ACRYGT 1 cut(s) 1336
AgsI TTSAA 9 cut(s) 61, 279, 523, 1118, 1328, 1438, 1565, 1636, 1646
AjnI CCWGG 3 cut(s) 710, 1342, 1456
Alw21I GWGCWC 2 cut(s) 1407, 1602
Alw26I GTCTC 5 cut(s) 133, 321, 1214, 1465, 1743
AlwI GGATC 1 cut(s) 298
Ama87I CYCGRG 1 cut(s) 389
AoxI GGCC 6 cut(s) 223, 1103, 1132, 1144, 1293, 1691
ApeKI GCWGC 7 cut(s) 5, 1111, 1226, 1229, 1232, 1607, 1715
ApoI RAATTY 4 cut(s) 214, 565, 1363, 1492
Asp700I GAANNNNTTC 1 cut(s) 347
Asp718I GGTACC 1 cut(s) 257
AspS9I GGNCC 7 cut(s) 223, 511, 708, 1144, 1294, 1691, 1700
AsuHPI GGTGA 2 cut(s) 679, 1204
AvaI CYCGRG 1 cut(s) 389
AvaII GGWCC 3 cut(s) 511, 708, 1700
BalI TGGCCA 1 cut(s) 1134
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 1602
BarI GAAGNNNNNNTAC 2 cut(s) 369, 401
BauI CACGAG 1 cut(s) 243
BbsI GAAGAC 2 cut(s) 21, 801
Bbv12I GWGCWC 2 cut(s) 1407, 1602
BbvCI CCTCAGC 1 cut(s) 1059
BbvI GCAGC 6 cut(s) 1123, 1238, 1241, 1244, 1594, 1702
BccI CCATC 6 cut(s) 117, 203, 1027, 1251, 1256, 1728
BciT130I CCWGG 3 cut(s) 712, 1344, 1458
BciVI GTATCC 1 cut(s) 1524
BclI TGATCA 1 cut(s) 453
BcoDI GTCTC 5 cut(s) 133, 321, 1214, 1465, 1743
BfaI CTAG 4 cut(s) 678, 1019, 1475, 1509
BfmI CTRYAG 1 cut(s) 1109
BfuI GTATCC 1 cut(s) 1524
BglII AGATCT 1 cut(s) 1741
BisI GCNGC 7 cut(s) 6, 1112, 1227, 1230, 1233, 1608, 1716
BlsI GCNGC 7 cut(s) 7, 1113, 1228, 1231, 1234, 1609, 1717
Bme1390I CCNGG 3 cut(s) 712, 1344, 1458
Bme18I GGWCC 3 cut(s) 511, 708, 1700
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 7 cut(s) 223, 511, 708, 1144, 1294, 1691, 1700
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 3 cut(s) 712, 1344, 1458
BmsI GCATC 6 cut(s) 187, 518, 1045, 1522, 1546, 1594
BoxI GACNNNNGTC 1 cut(s) 713
BpiI GAAGAC 2 cut(s) 21, 801
BpmI CTGGAG 2 cut(s) 103, 345
Bpu10I CCTNAGC 3 cut(s) 443, 1059, 1665
BsaAI YACGTR 1 cut(s) 896
BsaI GGTCTC 2 cut(s) 133, 321
BsaJI CCNNGG 4 cut(s) 390, 711, 1342, 1456
Bsc4I CCNNNNNNNGG 7 cut(s) 123, 150, 174, 823, 1141, 1153, 1463
Bse1I ACTGG 4 cut(s) 514, 1043, 1135, 1694
Bse3DI GCAATG 1 cut(s) 916
BseBI CCWGG 3 cut(s) 712, 1344, 1458
BseDI CCNNGG 4 cut(s) 390, 711, 1342, 1456
BseGI GGATG 3 cut(s) 178, 667, 1267
BseLI CCNNNNNNNGG 7 cut(s) 123, 150, 174, 823, 1141, 1153, 1463
BseMI GCAATG 1 cut(s) 916
BseMII CTCAG 5 cut(s) 5, 146, 549, 1050, 1656
BseNI ACTGG 4 cut(s) 514, 1043, 1135, 1694
BseRI GAGGAG 1 cut(s) 575
BseXI GCAGC 6 cut(s) 1123, 1238, 1241, 1244, 1594, 1702
BseYI CCCAGC 1 cut(s) 352
BshFI GGCC 6 cut(s) 225, 1105, 1134, 1146, 1295, 1693
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 2 cut(s) 1407, 1602
BsiHKCI CYCGRG 1 cut(s) 389
BsiWI CGTACG 1 cut(s) 1677
BslFI GGGAC 3 cut(s) 1001, 1325, 1439
BslI CCNNNNNNNGG 7 cut(s) 123, 150, 174, 823, 1141, 1153, 1463
BsmAI GTCTC 5 cut(s) 133, 321, 1214, 1465, 1743
BsmBI CGTCTC 1 cut(s) 1743
BsmFI GGGAC 3 cut(s) 1001, 1325, 1439
BsnI GGCC 6 cut(s) 225, 1105, 1134, 1146, 1295, 1693
Bso31I GGTCTC 2 cut(s) 133, 321
BsoBI CYCGRG 1 cut(s) 389
Bsp1286I GDGCHC 2 cut(s) 1407, 1602
Bsp1407I TGTACA 2 cut(s) 1353, 1411
Bsp143I GATC 8 cut(s) 290, 453, 921, 1094, 1317, 1440, 1477, 1741
BspACI CCGC 4 cut(s) 758, 1158, 1360, 1506
BspANI GGCC 6 cut(s) 225, 1105, 1134, 1146, 1295, 1693
BspCNI CTCAG 5 cut(s) 6, 145, 550, 1051, 1657
BspHI TCATGA 1 cut(s) 1760
BspLI GGNNCC 1 cut(s) 259
BspMAI CTGCAG 1 cut(s) 1113
BspPI GGATC 1 cut(s) 298
BspQI GCTCTTC 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 2 cut(s) 133, 321
BsrDI GCAATG 1 cut(s) 916
BsrGI TGTACA 2 cut(s) 1353, 1411
BsrI ACTGG 4 cut(s) 514, 1043, 1135, 1694
BssECI CCNNGG 4 cut(s) 390, 711, 1342, 1456
BssMI GATC 8 cut(s) 290, 453, 921, 1094, 1317, 1440, 1477, 1741
BssSI CACGAG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 243
Bst2UI CCWGG 3 cut(s) 712, 1344, 1458
Bst4CI ACNGT 6 cut(s) 310, 1026, 1195, 1208, 1551, 1682
Bst6I CTCTTC 3 cut(s) 58, 432, 946
BstAPI GCANNNNNTGC 2 cut(s) 362, 1028
BstAUI TGTACA 2 cut(s) 1353, 1411
BstBAI YACGTR 1 cut(s) 896
BstC8I GCNNGC 1 cut(s) 1311
BstF5I GGATG 3 cut(s) 178, 667, 1267
BstKTI GATC 8 cut(s) 293, 456, 924, 1097, 1320, 1443, 1480, 1744
BstMAI GTCTC 5 cut(s) 133, 321, 1214, 1465, 1743
BstMBI GATC 8 cut(s) 290, 453, 921, 1094, 1317, 1440, 1477, 1741
BstMWI GCNNNNNNNGC 5 cut(s) 362, 1028, 1111, 1232, 1292
BstNI CCWGG 3 cut(s) 712, 1344, 1458
BstNSI RCATGY 1 cut(s) 1340
BstPAI GACNNNNGTC 1 cut(s) 713
BstSCI CCNGG 3 cut(s) 710, 1342, 1456
BstSFI CTRYAG 1 cut(s) 1109
BstV1I GCAGC 6 cut(s) 1123, 1238, 1241, 1244, 1594, 1702
BstV2I GAAGAC 2 cut(s) 21, 801
BstX2I RGATCY 2 cut(s) 290, 1741
BstYI RGATCY 2 cut(s) 290, 1741
BsuI GTATCC 1 cut(s) 1524
BsuRI GGCC 6 cut(s) 225, 1105, 1134, 1146, 1295, 1693
BtgZI GCGATG 2 cut(s) 222, 1046
BtsCI GGATG 3 cut(s) 178, 667, 1267
BtsI GCAGTG 1 cut(s) 1106
BtsIMutI CAGTG 3 cut(s) 858, 1022, 1106
Cac8I GCNNGC 1 cut(s) 1311
CciI TCATGA 1 cut(s) 1760
Cfr13I GGNCC 7 cut(s) 223, 511, 708, 1144, 1294, 1691, 1700
Csp6I GTAC 7 cut(s) 258, 784, 973, 1354, 1412, 1672, 1678
CspCI CAANNNNNGTGG 2 cut(s) 267, 302
CviAII CATG 4 cut(s) 203, 451, 1337, 1761
CviQI GTAC 7 cut(s) 258, 784, 973, 1354, 1412, 1672, 1678
DpnI GATC 8 cut(s) 292, 455, 923, 1096, 1319, 1442, 1479, 1743
DpnII GATC 8 cut(s) 290, 453, 921, 1094, 1317, 1440, 1477, 1741
DraI TTTAAA 1 cut(s) 777
EaeI YGGCCR 1 cut(s) 1132
Eam1104I CTCTTC 3 cut(s) 58, 432, 946
EarI CTCTTC 3 cut(s) 58, 432, 946
Ecl136II GAGCTC 1 cut(s) 1600
Eco24I GRGCYC 1 cut(s) 1602
Eco31I GGTCTC 2 cut(s) 133, 321
Eco47I GGWCC 3 cut(s) 511, 708, 1700
Eco53kI GAGCTC 1 cut(s) 1600
Eco57I CTGAAG 4 cut(s) 18, 678, 813, 951
Eco88I CYCGRG 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 1600
EcoO109I RGGNCCY 2 cut(s) 1294, 1700
EcoRII CCWGG 3 cut(s) 710, 1342, 1456
EcoT22I ATGCAT 1 cut(s) 1537
EcoT38I GRGCYC 1 cut(s) 1602
Esp3I CGTCTC 1 cut(s) 1743
FaeI CATG 4 cut(s) 206, 454, 1340, 1764
FaqI GGGAC 3 cut(s) 1001, 1325, 1439
FatI CATG 4 cut(s) 202, 450, 1336, 1760
FbaI TGATCA 1 cut(s) 453
FblI GTMKAC 1 cut(s) 385
Fnu4HI GCNGC 7 cut(s) 6, 1112, 1227, 1230, 1233, 1608, 1716
FokI GGATG 3 cut(s) 165, 674, 1274
FriOI GRGCYC 1 cut(s) 1602
Fsp4HI GCNGC 7 cut(s) 6, 1112, 1227, 1230, 1233, 1608, 1716
FspBI CTAG 4 cut(s) 678, 1019, 1475, 1509
GluI GCNGC 7 cut(s) 6, 1112, 1227, 1230, 1233, 1608, 1716
GsaI CCCAGC 1 cut(s) 356
GsuI CTGGAG 2 cut(s) 103, 345
HaeIII GGCC 6 cut(s) 225, 1105, 1134, 1146, 1295, 1693
Hin1II CATG 4 cut(s) 206, 454, 1340, 1764
HinfI GANTC 7 cut(s) 16, 136, 275, 749, 844, 978, 1757
HphI GGTGA 2 cut(s) 679, 1204
Hpy166II GTNNAC 3 cut(s) 386, 708, 1412
Hpy188I TCNGA 7 cut(s) 135, 559, 697, 748, 931, 1322, 1748
Hpy188III TCNNGA 9 cut(s) 61, 120, 324, 520, 841, 1069, 1276, 1664, 1761
Hpy8I GTNNAC 3 cut(s) 386, 708, 1412
HpyAV CCTTC 5 cut(s) 101, 592, 823, 1559, 1569
HpyCH4III ACNGT 6 cut(s) 310, 1026, 1195, 1208, 1551, 1682
HpyCH4IV ACGT 1 cut(s) 895
HpyF10VI GCNNNNNNNGC 5 cut(s) 362, 1028, 1111, 1232, 1292
HpySE526I ACGT 1 cut(s) 895
Hsp92II CATG 4 cut(s) 206, 454, 1340, 1764
KpnI GGTACC 1 cut(s) 261
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 8 cut(s) 290, 453, 921, 1094, 1317, 1440, 1477, 1741
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 3 cut(s) 760, 832, 1410
Lsp1109I GCAGC 6 cut(s) 1123, 1238, 1241, 1244, 1594, 1702
LweI GCATC 6 cut(s) 187, 518, 1045, 1522, 1546, 1594
MaeI CTAG 4 cut(s) 678, 1019, 1475, 1509
MaeII ACGT 1 cut(s) 895
MaeIII GTNAC 4 cut(s) 740, 891, 896, 1346
MalI GATC 8 cut(s) 292, 455, 923, 1096, 1319, 1442, 1479, 1743
MboI GATC 8 cut(s) 290, 453, 921, 1094, 1317, 1440, 1477, 1741
MfeI CAATTG 1 cut(s) 1560
MflI RGATCY 2 cut(s) 290, 1741
MhlI GDGCHC 2 cut(s) 1407, 1602
MlsI TGGCCA 1 cut(s) 1134
MluNI TGGCCA 1 cut(s) 1134
MlyI GAGTC 1 cut(s) 25
Mox20I TGGCCA 1 cut(s) 1134
Mph1103I ATGCAT 1 cut(s) 1537
MroXI GAANNNNTTC 1 cut(s) 347
MscI TGGCCA 1 cut(s) 1134
MseI TTAA 1 cut(s) 776
MslI CAYNNNNRTG 2 cut(s) 207, 656
Msp20I TGGCCA 1 cut(s) 1134
MspR9I CCNGG 3 cut(s) 712, 1344, 1458
MunI CAATTG 1 cut(s) 1560
MvaI CCWGG 3 cut(s) 712, 1344, 1458
MwoI GCNNNNNNNGC 5 cut(s) 362, 1028, 1111, 1232, 1292
NdeII GATC 8 cut(s) 290, 453, 921, 1094, 1317, 1440, 1477, 1741
NlaIII CATG 4 cut(s) 206, 454, 1340, 1764
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 891
NsiI ATGCAT 1 cut(s) 1537
NspI RCATGY 1 cut(s) 1340
PagI TCATGA 1 cut(s) 1760
PciI ACATGT 1 cut(s) 1336
PciSI GCTCTTC 1 cut(s) 432
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 6 cut(s) 136, 275, 749, 844, 978, 1757
Pfl23II CGTACG 1 cut(s) 1677
PflMI CCANNNNNTGG 1 cut(s) 823
PkrI GCNGC 7 cut(s) 7, 1113, 1228, 1231, 1234, 1609, 1717
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Ppu21I YACGTR 1 cut(s) 896
PpuMI RGGWCCY 1 cut(s) 1700
PscI ACATGT 1 cut(s) 1336
PshAI GACNNNNGTC 1 cut(s) 713
Psp124BI GAGCTC 1 cut(s) 1602
Psp5II RGGWCCY 1 cut(s) 1700
Psp6I CCWGG 3 cut(s) 710, 1342, 1456
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 3 cut(s) 710, 1342, 1456
PspLI CGTACG 1 cut(s) 1677
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 7 cut(s) 223, 511, 708, 1144, 1294, 1691, 1700
PspPPI RGGWCCY 1 cut(s) 1700
PstI CTGCAG 1 cut(s) 1113
PsuI RGATCY 2 cut(s) 290, 1741
RsaI GTAC 7 cut(s) 259, 785, 974, 1355, 1413, 1673, 1679
RsaNI GTAC 7 cut(s) 258, 784, 973, 1354, 1412, 1672, 1678
RseI CAYNNNNRTG 2 cut(s) 207, 656
SacI GAGCTC 1 cut(s) 1602
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 1 cut(s) 776
SatI GCNGC 7 cut(s) 6, 1112, 1227, 1230, 1233, 1608, 1716
Sau3AI GATC 8 cut(s) 290, 453, 921, 1094, 1317, 1440, 1477, 1741
Sau96I GGNCC 7 cut(s) 223, 511, 708, 1144, 1294, 1691, 1700
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 3 cut(s) 712, 1344, 1458
SduI GDGCHC 2 cut(s) 1407, 1602
SfaNI GCATC 6 cut(s) 187, 518, 1045, 1522, 1546, 1594
SfcI CTRYAG 1 cut(s) 1109
SinI GGWCC 3 cut(s) 511, 708, 1700
SmiMI CAYNNNNRTG 2 cut(s) 207, 656
SsiI CCGC 4 cut(s) 758, 1158, 1360, 1506
SspMI CTAG 4 cut(s) 678, 1019, 1475, 1509
SstI GAGCTC 1 cut(s) 1602
StyD4I CCNGG 3 cut(s) 710, 1342, 1456
TaaI ACNGT 6 cut(s) 310, 1026, 1195, 1208, 1551, 1682
TaiI ACGT 1 cut(s) 898
TaqI TCGA 4 cut(s) 418, 840, 1480, 1602
TatI WGTACW 2 cut(s) 1353, 1411
TfiI GAWTC 6 cut(s) 136, 275, 749, 844, 978, 1757
Tru1I TTAA 1 cut(s) 776
Tru9I TTAA 1 cut(s) 776
TscAI CASTG 3 cut(s) 858, 1029, 1113
TseFI GTSAC 1 cut(s) 891
TseI GCWGC 7 cut(s) 5, 1111, 1226, 1229, 1232, 1607, 1715
Tsp45I GTSAC 1 cut(s) 891
TspGWI ACGGA 2 cut(s) 990, 1397
TspRI CASTG 3 cut(s) 858, 1029, 1113
Van91I CCANNNNNTGG 1 cut(s) 823
VpaK11BI GGWCC 3 cut(s) 511, 708, 1700
XapI RAATTY 4 cut(s) 214, 565, 1363, 1492
XceI RCATGY 1 cut(s) 1340
XmiI GTMKAC 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 4 cut(s) 678, 1019, 1475, 1509
Zsp2I ATGCAT 1 cut(s) 1537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.