MD09G1126100.v1.1

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
9738772 .. 9742675
3904 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1126100.v1.1.491

Sequence Viewer

Length: 1854 bp
ATGGCTACTCACCTGAGTACCTGTTCATCTTCTTCAGCCTCATTCCCTCCCTCTTCATTCAAAAACCAGACACCTCACTTCATAAAGTTCATCACTTTGCTCAGAGAATCCCATTCCTCCAGATGGGTTTCTCAGATTCCCCTCAGAATCCTCGCCAGAAAGCACTTTCAGCTCAAATCCTCAAATGGGCATCCGCTCAATGCTGTGTCTTTCAATGCCGCTGGAAATACTCTGGGACAAGAATATACCGAGCCTCGTGGCAAATCCTTTCCCATCTCGGATTCAGAAAATGTAGCATCTAATTTAAGCATAACTGTTGTTGGTGCTTCTGGAGACCTTGCAAAGAAGAAGATATTTCCAGCGCTTTTCGCTCTTTATTATGAAGATTGTCTACCTGAGAATTTCATGGTGTTTGGTTATGCTCGAACTCAAATGACTGATGAAGAGCTAAGGAACATGATTAGCAGAACCTTGACTTGCAGGATAGATAAGAGGGAAAATTGTGAGGACAAAATGGATCAGTTCTTGAAAAGATGCTTCTACCATGCTGGTCAATATAATTCCGAGGAAGATTTCGCAGAATTGGACAGCAAGATGATTGAGAAGGAGGCCGGAAGCAAGTCAAATAGGTTGTTTTACTTATCAATACCTCCAAACATATTTGTGGATGTGGTCAGATGTGCTAGCGTTAAAGCTTCTTCAGCAAATGGGTGGACGAGGGTAATTGTTGAAAAGCCATTCGGTCGTGATTCGGAATCATCTGCGGAGCTAACCAAATGTTTAAAGCAATACCTTGCTGAAGACCAAATATTTAGGATTGACCATTACTTGGGCAAGGAACTTGTCGAGAATCTATCGGTGCTTCGCTTCTCAAATCTTGTTTTTGAGCCTGTCTGGTCTCGTAACTACATTCGTAATGTGCAACTGATCTTTTCTGAAGATTTTGGCACAGAGGGAAGAGGAGGATATTTTGACAAGTATGGGATCATACGGGACATAATGCAAAACCATCTTCTGCAAATATTAGCACTGTTTGCTATGGAAACACCAGTCAGCCTAGATGCTGAAGACATTAGGAACGAAAAGGTAAATTTCTCTGTTTCCGATCTCATTTATGTCAAAATTCTGTTTTTTAAGAAATTCTATCCCAGAATGTTATGGAGATCCTACCTTAATGTTAAGGTTCTACGGTCAATGAGGCCACTGCTGCTTGAAGACGTAGTCATTGGTCAATACAAGGGTCACAGCAAGGGCAGTAAATTGTATCCTGCTTATATAGATGACCCAACTGTGCCAAAAGACAGCCTCACCCCTACATTTGCCGCAGCAGCTCTCTTTATTGACAATGCCAGATGGGATGGAGTTCCTTTCTTGATGAAAGCAGGAAAGGCTCTCCATACTAAGCGAGCAGAGATCAGAGTCCAATTCAGACATGTTCCGGGAAACTTGTATAAGAGGAACTTTGGAACCGATTTAGATAAGGCTACAAATGAGCTTGTGCTTCGTGTACAACCTGATGAAGCCATATATCTGAAGATCAACAACAAAGTCCCTGGTCTTGGCATGAGACTGGATCGAAGTGACCTGAATTTGCTTTACCGATCAAGGTATCCAAAAGAAATACCAGATGCATATGAGAGGCTACTCCTAGATGCAATTGAAGGGGAACGAAGGTTGTTCATTAGAAGTGACGAGCTGGATGCTGCTTGGTCACTATTCACACCATTGTTGAAGGAGCTTGAACAGAAGAAGATTGTTCCCGAGCTCTACCCCTACGGCAGTAGAGGACCTGTAGGACCGCACTATCTTGCTGCGAAGCACAATGTCAGGTGGGGTGATCTCAGTGATGATTGA

Protein Analysis

618

Amino Acids

70.68

Weight (kDa)

8.74

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G6PD_N PF00479 106 - 284 9.4e-59 Glucose-6-phosphate dehydrogenase, NAD binding domain
G6PD_C PF02781 287 - 364 3.7e-35 Glucose-6-phosphate dehydrogenase, C-terminal domain
G6PD_C PF02781 393 - 611 5.7e-68 Glucose-6-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 829
AccBSI CCGCTC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 391
AciI CCGC 5 cut(s) 194, 219, 764, 1323, 1799
AclWI GGATC 4 cut(s) 525, 992, 1158, 1581
AcsI RAATTY 5 cut(s) 400, 1090, 1122, 1139, 1588
AcuI CTGAAG 6 cut(s) 18, 684, 819, 957, 1086, 1553
AfaI GTAC 2 cut(s) 19, 1509
AfeI AGCGCT 1 cut(s) 363
AfiI CCNNNNNNNGG 4 cut(s) 123, 186, 829, 1559
AflIII ACRYGT 1 cut(s) 1432
AgsI TTSAA 8 cut(s) 61, 214, 529, 731, 1214, 1661, 1732, 1742
AjnI CCWGG 1 cut(s) 1552
AluBI AGCT 9 cut(s) 172, 448, 695, 769, 1331, 1495, 1696, 1738, 1765
AluI AGCT 9 cut(s) 172, 448, 695, 769, 1331, 1495, 1696, 1738, 1765
Alw21I GWGCWC 1 cut(s) 1767
Alw26I GTCTC 3 cut(s) 327, 903, 1561
AlwI GGATC 4 cut(s) 525, 992, 1158, 1581
Ama87I CYCGRG 1 cut(s) 1760
Aor51HI AGCGCT 1 cut(s) 363
AoxI GGCC 2 cut(s) 609, 1199
ApeKI GCWGC 5 cut(s) 1207, 1325, 1328, 1703, 1811
ApoI RAATTY 5 cut(s) 400, 1090, 1122, 1139, 1588
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 2 cut(s) 1787, 1796
AsuC2I CCSGG 1 cut(s) 1440
AsuHPI GGTGA 2 cut(s) 1300, 1847
AsuNHI GCTAGC 1 cut(s) 683
AvaI CYCGRG 1 cut(s) 1760
AvaII GGWCC 2 cut(s) 1787, 1796
BaeI ACNNNNGTAYC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 1767
BarI GAAGNNNNNNTAC 2 cut(s) 375, 407
BauI CACGAG 1 cut(s) 255
BbsI GAAGAC 3 cut(s) 807, 1074, 1221
Bbv12I GWGCWC 1 cut(s) 1767
BbvI GCAGC 5 cut(s) 1194, 1337, 1340, 1690, 1798
BccI CCATC 5 cut(s) 117, 281, 1017, 1347, 1352
BceAI ACGGC 1 cut(s) 1792
BcgI CGANNNNNNTGC 2 cut(s) 1682, 1716
BciT130I CCWGG 1 cut(s) 1554
BciVI GTATCC 2 cut(s) 1275, 1620
BcnI CCSGG 1 cut(s) 1440
BcoDI GTCTC 3 cut(s) 327, 903, 1561
BfaI CTAG 3 cut(s) 684, 1058, 1649
BfmI CTRYAG 1 cut(s) 1791
BfoI RGCGCY 1 cut(s) 365
BfuI GTATCC 2 cut(s) 1275, 1620
BisI GCNGC 7 cut(s) 219, 1208, 1323, 1326, 1329, 1704, 1812
BlsI GCNGC 7 cut(s) 220, 1209, 1324, 1327, 1330, 1705, 1813
Bme1390I CCNGG 2 cut(s) 1440, 1554
Bme18I GGWCC 2 cut(s) 1787, 1796
BmeT110I CYCGRG 1 cut(s) 1760
BmgT120I GGNCC 2 cut(s) 1787, 1796
BmiI GGNNCC 1 cut(s) 1468
BmrFI CCNGG 2 cut(s) 1440, 1554
BmsI GCATC 7 cut(s) 199, 305, 524, 1051, 1618, 1642, 1690
BmtI GCTAGC 1 cut(s) 687
BpiI GAAGAC 3 cut(s) 807, 1074, 1221
BpmI CTGGAG 2 cut(s) 103, 351
Bpu10I CCTNAGC 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 1440
BsaI GGTCTC 2 cut(s) 327, 903
BsaJI CCNNGG 2 cut(s) 564, 1552
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 186, 829, 1559
Bse1I ACTGG 2 cut(s) 1049, 1575
BseBI CCWGG 1 cut(s) 1554
BseDI CCNNGG 2 cut(s) 564, 1552
BseGI GGATG 4 cut(s) 190, 673, 1363, 1705
BseLI CCNNNNNNNGG 4 cut(s) 123, 186, 829, 1559
BseMII CTCAG 5 cut(s) 5, 115, 146, 157, 387
BseNI ACTGG 2 cut(s) 1049, 1575
BseRI GAGGAG 1 cut(s) 975
BseXI GCAGC 5 cut(s) 1194, 1337, 1340, 1690, 1798
Bsh1285I CGRYCG 1 cut(s) 745
BshFI GGCC 2 cut(s) 611, 1201
BsiEI CGRYCG 1 cut(s) 745
BsiHKAI GWGCWC 1 cut(s) 1767
BsiHKCI CYCGRG 1 cut(s) 1760
BsiSI CCGG 2 cut(s) 612, 1439
BslFI GGGAC 3 cut(s) 249, 1007, 1535
BslI CCNNNNNNNGG 4 cut(s) 123, 186, 829, 1559
BsmAI GTCTC 3 cut(s) 327, 903, 1561
BsmFI GGGAC 3 cut(s) 249, 1007, 1535
BsnI GGCC 2 cut(s) 611, 1201
Bso31I GGTCTC 2 cut(s) 327, 903
BsoBI CYCGRG 1 cut(s) 1760
Bsp1286I GDGCHC 1 cut(s) 1767
Bsp1407I TGTACA 1 cut(s) 1507
BspACI CCGC 5 cut(s) 194, 219, 764, 1323, 1799
BspANI GGCC 2 cut(s) 611, 1201
BspCNI CTCAG 6 cut(s) 6, 114, 145, 156, 388, 1854
BspLI GGNNCC 1 cut(s) 1468
BspOI GCTAGC 1 cut(s) 687
BspPI GGATC 4 cut(s) 525, 992, 1158, 1581
BspQI GCTCTTC 1 cut(s) 438
BspTNI GGTCTC 2 cut(s) 327, 903
BsrBI CCGCTC 1 cut(s) 196
BsrGI TGTACA 1 cut(s) 1507
BsrI ACTGG 2 cut(s) 1049, 1575
BssECI CCNNGG 2 cut(s) 564, 1552
BssSI CACGAG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 1554
Bst4CI ACNGT 4 cut(s) 316, 1032, 1191, 1291
Bst6I CTCTTC 3 cut(s) 58, 438, 952
BstAPI GCANNNNNTGC 1 cut(s) 1034
BstAUI TGTACA 1 cut(s) 1507
BstC8I GCNNGC 2 cut(s) 685, 1407
BstDEI CTNAG 8 cut(s) 14, 101, 132, 143, 396, 449, 1401, 1841
BstF5I GGATG 4 cut(s) 190, 673, 1363, 1705
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 1 cut(s) 364
BstMAI GTCTC 3 cut(s) 327, 903, 1561
BstMCI CGRYCG 1 cut(s) 745
BstMWI GCNNNNNNNGC 7 cut(s) 169, 368, 701, 1034, 1207, 1328, 1388
BstNI CCWGG 1 cut(s) 1554
BstNSI RCATGY 1 cut(s) 1436
BstSCI CCNGG 2 cut(s) 1438, 1552
BstSFI CTRYAG 1 cut(s) 1791
BstV1I GCAGC 5 cut(s) 1194, 1337, 1340, 1690, 1798
BstV2I GAAGAC 3 cut(s) 807, 1074, 1221
BstX2I RGATCY 1 cut(s) 1163
BstYI RGATCY 1 cut(s) 1163
BsuI GTATCC 2 cut(s) 1275, 1620
BsuRI GGCC 2 cut(s) 611, 1201
BtsCI GGATG 4 cut(s) 190, 673, 1363, 1705
BtsI GCAGTG 1 cut(s) 1202
BtsIMutI CAGTG 3 cut(s) 1028, 1202, 1849
Cac8I GCNNGC 2 cut(s) 685, 1407
CfoI GCGC 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 1787, 1796
Csp6I GTAC 2 cut(s) 18, 1508
CviAII CATG 5 cut(s) 406, 457, 545, 1433, 1564
CviQI GTAC 2 cut(s) 18, 1508
DdeI CTNAG 8 cut(s) 14, 101, 132, 143, 396, 449, 1401, 1841
DraI TTTAAA 1 cut(s) 783
Eam1104I CTCTTC 3 cut(s) 58, 438, 952
EarI CTCTTC 3 cut(s) 58, 438, 952
Ecl136II GAGCTC 1 cut(s) 1765
Eco24I GRGCYC 1 cut(s) 1767
Eco31I GGTCTC 2 cut(s) 327, 903
Eco47I GGWCC 2 cut(s) 1787, 1796
Eco47III AGCGCT 1 cut(s) 363
Eco53kI GAGCTC 1 cut(s) 1765
Eco57I CTGAAG 6 cut(s) 18, 684, 819, 957, 1086, 1553
Eco88I CYCGRG 1 cut(s) 1760
EcoICRI GAGCTC 1 cut(s) 1765
EcoO109I RGGNCCY 1 cut(s) 1787
EcoRII CCWGG 1 cut(s) 1552
EcoT22I ATGCAT 1 cut(s) 1633
EcoT38I GRGCYC 1 cut(s) 1767
FaeI CATG 5 cut(s) 409, 460, 548, 1436, 1567
FalI AAGNNNNNCTT 2 cut(s) 1445, 1477
FaqI GGGAC 3 cut(s) 249, 1007, 1535
FatI CATG 5 cut(s) 405, 456, 544, 1432, 1563
FauNDI CATATG 1 cut(s) 1633
FblI GTMKAC 1 cut(s) 391
Fnu4HI GCNGC 7 cut(s) 219, 1208, 1323, 1326, 1329, 1704, 1812
FokI GGATG 4 cut(s) 177, 680, 1370, 1712
FriOI GRGCYC 1 cut(s) 1767
Fsp4HI GCNGC 7 cut(s) 219, 1208, 1323, 1326, 1329, 1704, 1812
FspBI CTAG 3 cut(s) 684, 1058, 1649
GlaI GCGC 1 cut(s) 363
GluI GCNGC 7 cut(s) 219, 1208, 1323, 1326, 1329, 1704, 1812
GsuI CTGGAG 2 cut(s) 103, 351
HaeII RGCGCY 1 cut(s) 365
HaeIII GGCC 2 cut(s) 611, 1201
HapII CCGG 2 cut(s) 612, 1439
HhaI GCGC 1 cut(s) 364
Hin1II CATG 5 cut(s) 409, 460, 548, 1436, 1567
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HindIII AAGCTT 1 cut(s) 693
HinfI GANTC 8 cut(s) 107, 136, 147, 281, 749, 755, 850, 1419
HpaII CCGG 2 cut(s) 612, 1439
HphI GGTGA 2 cut(s) 1300, 1847
Hpy166II GTNNAC 3 cut(s) 392, 714, 1508
Hpy188III TCNNGA 7 cut(s) 120, 330, 526, 746, 847, 1372, 1760
Hpy8I GTNNAC 3 cut(s) 392, 714, 1508
HpyAV CCTTC 4 cut(s) 598, 1655, 1665, 1726
HpyCH4III ACNGT 4 cut(s) 316, 1032, 1191, 1291
HpyCH4IV ACGT 1 cut(s) 1218
HpyCH4V TGCA 7 cut(s) 341, 480, 922, 1003, 1018, 1631, 1655
HpyF10VI GCNNNNNNNGC 7 cut(s) 169, 368, 701, 1034, 1207, 1328, 1388
HpyF3I CTNAG 8 cut(s) 14, 101, 132, 143, 396, 449, 1401, 1841
HpySE526I ACGT 1 cut(s) 1218
Hsp92II CATG 5 cut(s) 409, 460, 548, 1436, 1567
HspAI GCGC 1 cut(s) 362
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 2 cut(s) 766, 1735
Lsp1109I GCAGC 5 cut(s) 1194, 1337, 1340, 1690, 1798
LweI GCATC 7 cut(s) 199, 305, 524, 1051, 1618, 1642, 1690
MaeI CTAG 3 cut(s) 684, 1058, 1649
MaeII ACGT 1 cut(s) 1218
MaeIII GTNAC 5 cut(s) 902, 1241, 1580, 1688, 1710
MbiI CCGCTC 1 cut(s) 196
MfeI CAATTG 1 cut(s) 1656
MflI RGATCY 1 cut(s) 1163
MhlI GDGCHC 1 cut(s) 1767
MlyI GAGTC 1 cut(s) 1428
Mph1103I ATGCAT 1 cut(s) 1633
MseI TTAA 6 cut(s) 305, 690, 782, 1134, 1173, 1179
MslI CAYNNNNRTG 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 2 cut(s) 612, 1439
MspR9I CCNGG 2 cut(s) 1440, 1554
MunI CAATTG 1 cut(s) 1656
MvaI CCWGG 1 cut(s) 1554
MwoI GCNNNNNNNGC 7 cut(s) 169, 368, 701, 1034, 1207, 1328, 1388
NciI CCSGG 1 cut(s) 1440
NdeI CATATG 1 cut(s) 1633
NheI GCTAGC 1 cut(s) 683
NlaIII CATG 5 cut(s) 409, 460, 548, 1436, 1567
NlaIV GGNNCC 1 cut(s) 1468
NmuCI GTSAC 4 cut(s) 1241, 1580, 1688, 1710
NsiI ATGCAT 1 cut(s) 1633
NspI RCATGY 1 cut(s) 1436
PciI ACATGT 1 cut(s) 1432
PciSI GCTCTTC 1 cut(s) 438
PfeI GAWTC 7 cut(s) 107, 136, 147, 281, 749, 755, 850
PflFI GACNNNGTC 1 cut(s) 1220
PflMI CCANNNNNTGG 1 cut(s) 829
PfoI TCCNGGA 1 cut(s) 1438
PkrI GCNGC 7 cut(s) 220, 1209, 1324, 1327, 1330, 1705, 1813
PleI GAGTC 1 cut(s) 1427
PpsI GAGTC 1 cut(s) 1427
PpuMI RGGWCCY 1 cut(s) 1787
PscI ACATGT 1 cut(s) 1432
Psp124BI GAGCTC 1 cut(s) 1767
Psp5II RGGWCCY 1 cut(s) 1787
Psp6I CCWGG 1 cut(s) 1552
PspGI CCWGG 1 cut(s) 1552
PspN4I GGNNCC 1 cut(s) 1468
PspPI GGNCC 2 cut(s) 1787, 1796
PspPPI RGGWCCY 1 cut(s) 1787
PsuI RGATCY 1 cut(s) 1163
PsyI GACNNNGTC 1 cut(s) 1220
RsaI GTAC 2 cut(s) 19, 1509
RsaNI GTAC 2 cut(s) 18, 1508
RseI CAYNNNNRTG 1 cut(s) 662
SacI GAGCTC 1 cut(s) 1767
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 6 cut(s) 305, 690, 782, 1134, 1173, 1179
SatI GCNGC 7 cut(s) 219, 1208, 1323, 1326, 1329, 1704, 1812
Sau96I GGNCC 2 cut(s) 1787, 1796
SchI GAGTC 1 cut(s) 1428
ScrFI CCNGG 2 cut(s) 1440, 1554
SduI GDGCHC 1 cut(s) 1767
SfaNI GCATC 7 cut(s) 199, 305, 524, 1051, 1618, 1642, 1690
SfcI CTRYAG 1 cut(s) 1791
SinI GGWCC 2 cut(s) 1787, 1796
SmiMI CAYNNNNRTG 1 cut(s) 662
SsiI CCGC 5 cut(s) 194, 219, 764, 1323, 1799
SspI AATATT 2 cut(s) 810, 1023
SspMI CTAG 3 cut(s) 684, 1058, 1649
SstI GAGCTC 1 cut(s) 1767
StyD4I CCNGG 2 cut(s) 1438, 1552
TaaI ACNGT 4 cut(s) 316, 1032, 1191, 1291
TaiI ACGT 1 cut(s) 1221
TaqI TCGA 3 cut(s) 424, 846, 1576
TaqII GACCGA 1 cut(s) 731
TatI WGTACW 1 cut(s) 1507
TauI GCSGC 2 cut(s) 221, 1325
TfiI GAWTC 7 cut(s) 107, 136, 147, 281, 749, 755, 850
Tru1I TTAA 6 cut(s) 305, 690, 782, 1134, 1173, 1179
Tru9I TTAA 6 cut(s) 305, 690, 782, 1134, 1173, 1179
TscAI CASTG 3 cut(s) 1035, 1209, 1849
TseFI GTSAC 4 cut(s) 1241, 1580, 1688, 1710
TseI GCWGC 5 cut(s) 1207, 1325, 1328, 1703, 1811
Tsp45I GTSAC 4 cut(s) 1241, 1580, 1688, 1710
TspRI CASTG 3 cut(s) 1035, 1209, 1849
Tth111I GACNNNGTC 1 cut(s) 1220
Van91I CCANNNNNTGG 1 cut(s) 829
VpaK11BI GGWCC 2 cut(s) 1787, 1796
XapI RAATTY 5 cut(s) 400, 1090, 1122, 1139, 1588
XceI RCATGY 1 cut(s) 1436
XmiI GTMKAC 1 cut(s) 391
XspI CTAG 3 cut(s) 684, 1058, 1649
Zsp2I ATGCAT 1 cut(s) 1633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.