Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015669

Physical Location & Seq

Genomic Coordinates Forward (+)

32090249 .. 32093640

Gene Structure 3392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGTAATGGGGAATGCCTGTGGTAGAGAGGAAGGAGAAGGCTCTTCTTCTGGAGTTAACAACTTTCAAGAGAATGATGAACCCATGGCTCACTCACCTCCCCATAACCCCTTCATCACTTCACAAAATCCTGGGGACACGTCAACAAGAGCGGGTGAGGCAGTATCGCAAAACATAGAAGATAATGATAATGTACAAAATCAGAACTTTAGACGCATGAAGATCTCATGGACTCATGGTGGCAGGCAAGTTGCTGTCACAGGATCATGGGACAATTGGGAGACCAGGGAGCCGCTGCAGAATACAGGTAACGAATTCATTGTCATAAAGTTGCTTCCATCAGGTCTCTATCAGTACCGCTTCATTGTTGATGGGTGTTGGAGGTGTGCTCCAGACTTGCCATGGTTGTATGACGAATCAGGAACTGCCTACAATGTTTTGGATTTGCAGGAATATGGTTTGGAACTGCCTGAACGCCTGTCAAAGTTCGAAACACCTCCATCCCCACCTTCAAGCTATGATAACAGACGCTTAAGTGAAGACGATTTCAGTAAACCTCCGCCAGAAGTACCTCCACAACTACAAGTCCCATTTTTAAACAGGCCATCTTCCTCTTCAAATGCTAGTGACCAGCCATTGTCAATGCCTCATTATTCACAATTGAACCATTTGTACATCCAGAACCAAATTGGTGGCGAGCTTTTCGCACTCAGTTCTACACATAGGTTTCGTCAAAAATTTGTTACAATGGTGTTATACAAGCGATTGAACAGAGAAAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

262

Amino Acids

29.62

Weight (kDa)

5.09

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	73 - 151	6.4e-28	Glycogen recognition site of AMP-activated protein kinase
AMPKBI	PF04739	184 - 254	6e-20	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015669)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g40620
malus_domestica	MD09G1126700.v1.1 MD17G1117000.v1.1
prunus_persica	Prupe.3G197500_v2.0.a1 Prupe.3G197500_v2.0.a1
pyrus_communis	pycom09g05090
rosa_chinensis	RchiOBHm_Chr2g0155991
rosa_laevigata	RLG00000020879
rosa_multiflora	Rmu_sc0000260.1_g000025
rosa_roxburghii	Rroxscaffold_2G00093310
rosa_rugosa	Rorug02G0451000
rosa_samantha	Rh2AG517800 Rh2BG529000 Rh2CG502500 Rh2DG538100
rosa_wichuraiana	Rw2G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	152
AciI	CCGC	4 cut(s)	152, 293, 358, 560
AclWI	GGATC	1 cut(s)	271
AcsI	RAATTY	2 cut(s)	314, 737
AfaI	GTAC	4 cut(s)	195, 356, 570, 674
AflII	CTTAAG	1 cut(s)	532
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	5 cut(s)	68, 513, 618, 664, 769
AjiI	CACGTC	1 cut(s)	141
AjnI	CCWGG	2 cut(s)	130, 284
AluBI	AGCT	2 cut(s)	516, 700
AluI	AGCT	2 cut(s)	516, 700
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	2 cut(s)	275, 350
AlwI	GGATC	1 cut(s)	271
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	1 cut(s)	602
ApeKI	GCWGC	1 cut(s)	295
ApoI	RAATTY	2 cut(s)	314, 737
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
AsuHPI	GGTGA	2 cut(s)	87, 167
AsuII	TTCGAA	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	4 cut(s)	346, 365, 508, 613
BciT130I	CCWGG	2 cut(s)	132, 286
BcoDI	GTCTC	2 cut(s)	275, 350
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	1 cut(s)	296
BfrI	CTTAAG	1 cut(s)	532
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	2 cut(s)	293, 296
BlsI	GCNGC	2 cut(s)	294, 297
Bme1390I	CCNGG	2 cut(s)	132, 286
BmgBI	CACGTC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	2 cut(s)	132, 286
BpiI	GAAGAC	1 cut(s)	546
BplI	GAGNNNNNCTC	2 cut(s)	373, 405
BpmI	CTGGAG	2 cut(s)	72, 375
Bpu14I	TTCGAA	1 cut(s)	489
BsaI	GGTCTC	2 cut(s)	275, 350
BsaJI	CCNNGG	4 cut(s)	84, 131, 285, 401
BseBI	CCWGG	2 cut(s)	132, 286
BseDI	CCNNGG	4 cut(s)	84, 131, 285, 401
BseGI	GGATG	2 cut(s)	500, 675
BseMII	CTCAG	1 cut(s)	724
BseXI	GCAGC	1 cut(s)	282
BshFI	GGCC	1 cut(s)	604
BsiHKAI	GWGCWC	1 cut(s)	391
BslFI	GGGAC	3 cut(s)	149, 284, 572
BsmAI	GTCTC	2 cut(s)	275, 350
BsmFI	GGGAC	3 cut(s)	149, 284, 572
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	604
Bso31I	GGTCTC	2 cut(s)	275, 350
Bsp119I	TTCGAA	1 cut(s)	489
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp1407I	TGTACA	2 cut(s)	193, 672
Bsp143I	GATC	2 cut(s)	222, 263
Bsp19I	CCATGG	2 cut(s)	84, 401
BspACI	CCGC	4 cut(s)	152, 293, 358, 560
BspANI	GGCC	1 cut(s)	604
BspCNI	CTCAG	1 cut(s)	723
BspLI	GGNNCC	1 cut(s)	291
BspMAI	CTGCAG	1 cut(s)	300
BspPI	GGATC	1 cut(s)	271
BspQI	GCTCTTC	1 cut(s)	49
BspT104I	TTCGAA	1 cut(s)	489
BspTI	CTTAAG	1 cut(s)	532
BspTNI	GGTCTC	2 cut(s)	275, 350
BsrBI	CCGCTC	1 cut(s)	152
BsrGI	TGTACA	2 cut(s)	193, 672
BssECI	CCNNGG	4 cut(s)	84, 131, 285, 401
BssMI	GATC	2 cut(s)	222, 263
BssT1I	CCWWGG	2 cut(s)	84, 401
Bst2UI	CCWGG	2 cut(s)	132, 286
Bst6I	CTCTTC	2 cut(s)	49, 619
BstAFI	CTTAAG	1 cut(s)	532
BstAUI	TGTACA	2 cut(s)	193, 672
BstBI	TTCGAA	1 cut(s)	489
BstC8I	GCNNGC	2 cut(s)	245, 698
BstDEI	CTNAG	1 cut(s)	710
BstDSI	CCRYGG	2 cut(s)	84, 401
BstF5I	GGATG	2 cut(s)	500, 675
BstKTI	GATC	2 cut(s)	225, 266
BstMAI	GTCTC	2 cut(s)	275, 350
BstMBI	GATC	2 cut(s)	222, 263
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	2 cut(s)	132, 286
BstSCI	CCNGG	2 cut(s)	130, 284
BstSFI	CTRYAG	1 cut(s)	296
BstV1I	GCAGC	1 cut(s)	282
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	1 cut(s)	222
BstXI	CCANNNNNNTGG	1 cut(s)	692
BstYI	RGATCY	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	604
BtgI	CCRYGG	2 cut(s)	84, 401
BtrI	CACGTC	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	500, 675
Cac8I	GCNNGC	2 cut(s)	245, 698
CaiI	CAGNNNCTG	1 cut(s)	425
CseI	GACGC	2 cut(s)	222, 537
Csp6I	GTAC	4 cut(s)	194, 355, 569, 673
CviAII	CATG	6 cut(s)	85, 217, 228, 236, 267, 402
CviJI	RGCY	7 cut(s)	42, 89, 292, 516, 604, 634, 700
CviKI_1	RGCY	7 cut(s)	42, 89, 292, 516, 604, 634, 700
CviQI	GTAC	4 cut(s)	194, 355, 569, 673
DdeI	CTNAG	1 cut(s)	710
DpnI	GATC	2 cut(s)	224, 265
DpnII	GATC	2 cut(s)	222, 263
DraI	TTTAAA	1 cut(s)	597
Eam1104I	CTCTTC	2 cut(s)	49, 619
EarI	CTCTTC	2 cut(s)	49, 619
EciI	GGCGGA	1 cut(s)	549
Eco130I	CCWWGG	2 cut(s)	84, 401
Eco31I	GGTCTC	2 cut(s)	275, 350
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	130, 284
EcoT14I	CCWWGG	2 cut(s)	84, 401
ErhI	CCWWGG	2 cut(s)	84, 401
FaeI	CATG	6 cut(s)	88, 220, 231, 239, 270, 405
FaqI	GGGAC	3 cut(s)	149, 284, 572
FatI	CATG	6 cut(s)	84, 216, 227, 235, 266, 401
FauI	CCCGC	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	293, 296
FokI	GGATG	2 cut(s)	487, 662
Fsp4HI	GCNGC	2 cut(s)	293, 296
FspBI	CTAG	1 cut(s)	624
GluI	GCNGC	2 cut(s)	293, 296
GsuI	CTGGAG	2 cut(s)	72, 375
HaeIII	GGCC	1 cut(s)	604
HgaI	GACGC	2 cut(s)	222, 537
Hin1II	CATG	6 cut(s)	88, 220, 231, 239, 270, 405
HincII	GTYRAC	2 cut(s)	58, 144
HindII	GTYRAC	2 cut(s)	58, 144
HinfI	GANTC	2 cut(s)	232, 416
HpaI	GTTAAC	1 cut(s)	58
HphI	GGTGA	2 cut(s)	87, 167
Hpy166II	GTNNAC	3 cut(s)	58, 144, 554
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	5 cut(s)	51, 68, 392, 420, 679
Hpy8I	GTNNAC	3 cut(s)	58, 144, 554
HpyAV	CCTTC	4 cut(s)	26, 32, 121, 519
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	2 cut(s)	298, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	710
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	6 cut(s)	88, 220, 231, 239, 270, 405
KspAI	GTTAAC	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	222, 263
LguI	GCTCTTC	1 cut(s)	49
LmnI	GCTCC	2 cut(s)	289, 394
Lsp1109I	GCAGC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	4 cut(s)	256, 308, 626, 742
MalI	GATC	2 cut(s)	224, 265
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	2 cut(s)	222, 263
MboII	GAAGA	7 cut(s)	36, 39, 191, 232, 551, 600, 606
MfeI	CAATTG	2 cut(s)	274, 659
MflI	RGATCY	1 cut(s)	222
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	5 cut(s)	274, 314, 659, 687, 737
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	9 cut(s)	22, 108, 151, 375, 507, 567, 582, 622, 657
MseI	TTAA	3 cut(s)	57, 533, 596
MspA1I	CMGCKG	1 cut(s)	295
MspCI	CTTAAG	1 cut(s)	532
MspR9I	CCNGG	2 cut(s)	132, 286
MunI	CAATTG	2 cut(s)	274, 659
Mva1269I	GAATGC	1 cut(s)	19
MvaI	CCWGG	2 cut(s)	132, 286
MwoI	GCNNNNNNNGC	1 cut(s)	158
NcoI	CCATGG	2 cut(s)	84, 401
NdeII	GATC	2 cut(s)	222, 263
NlaIII	CATG	6 cut(s)	88, 220, 231, 239, 270, 405
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	2 cut(s)	256, 626
NspV	TTCGAA	1 cut(s)	489
PciSI	GCTCTTC	1 cut(s)	49
PctI	GAATGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	294, 297
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	130, 284
PspGI	CCWGG	2 cut(s)	130, 284
PspN4I	GGNNCC	1 cut(s)	291
PsrI	GAACNNNNNNTAC	2 cut(s)	656, 688
PstI	CTGCAG	1 cut(s)	300
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	4 cut(s)	195, 356, 570, 674
RsaNI	GTAC	4 cut(s)	194, 355, 569, 673
SapI	GCTCTTC	1 cut(s)	49
SaqAI	TTAA	3 cut(s)	57, 533, 596
SatI	GCNGC	2 cut(s)	293, 296
Sau3AI	GATC	2 cut(s)	222, 263
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	132, 286
SduI	GDGCHC	1 cut(s)	391
SfcI	CTRYAG	1 cut(s)	296
SfuI	TTCGAA	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
Sse9I	AATT	5 cut(s)	274, 314, 659, 687, 737
SsiI	CCGC	4 cut(s)	152, 293, 358, 560
SspMI	CTAG	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	130, 284
StyI	CCWWGG	2 cut(s)	84, 401
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	489
TasI	AATT	5 cut(s)	274, 314, 659, 687, 737
TatI	WGTACW	2 cut(s)	193, 672
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	3 cut(s)	57, 533, 596
Tru9I	TTAA	3 cut(s)	57, 533, 596
TseFI	GTSAC	2 cut(s)	256, 626
TseI	GCWGC	1 cut(s)	295
Tsp45I	GTSAC	2 cut(s)	256, 626
TspDTI	ATGAA	5 cut(s)	93, 103, 233, 307, 352
Vha464I	CTTAAG	1 cut(s)	532
XapI	RAATTY	2 cut(s)	314, 737
XcmI	CCANNNNNNNNNTGG	2 cut(s)	399, 686
XspI	CTAG	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.