pycom09g05090

SNF1-related protein kinase regulatory subunit beta-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0015669
Physical Location & Seq
Reverse (-)
3786892 .. 3788091
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g05090.2

Sequence Viewer

Length: 402 bp
ATGTGTGCTCCAGACTTGCCGTGGGTTTACGATAATTCTGGGAGTGCGTATAATATCTTGGACTTGCAGGAATGTATTTCAGAATTGCCTCAGCATCTGGAAAAGTTCGAACCTCCTCCATCTCCACCTTCAAGCTACGACAACAGACTCTTAAGCGAAGATGATTTCAGTAAACCTCCGCTGGAAGTACCCCCACAACTACAAGAATCATTTCTAAACAAGCCATCATCCTCCAACAACGGTGACCAGTCATTACCAATGCCTCATCCTTCACAATTGAACCATTTGCACATACAGAACCAAATTGGCGGCAAGTTTTTTGCACTCAGCGCTACACGTAGGTTTCATACAAAGTTTGTCACAACGGTGTTATACAAGCCACTGAGAAGAACAAATCAGTAA

Protein Analysis

134

Amino Acids

15.12

Weight (kDa)

5.9

Isoelectric Point (pI)

81.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015669)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g40620
malus_domestica MD09G1126700.v1.1 MD17G1117000.v1.1
prunus_persica Prupe.3G197500_v2.0.a1 Prupe.3G197500_v2.0.a1
pyrus_communis pycom09g05090
rosa_chinensis RchiOBHm_Chr2g0155991
rosa_laevigata RLG00000020879
rosa_multiflora Rmu_sc0000260.1_g000025
rosa_roxburghii Rroxscaffold_2G00093310
rosa_rugosa Rorug02G0451000
rosa_samantha Rh2AG517800 Rh2BG529000 Rh2CG502500 Rh2DG538100
rosa_wichuraiana Rw2G042630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 179, 309
AfaI GTAC 1 cut(s) 189
AfeI AGCGCT 1 cut(s) 331
AflII CTTAAG 1 cut(s) 151
AflIII ACRYGT 1 cut(s) 335
AgsI TTSAA 2 cut(s) 132, 280
AleI CACNNNNGTG 1 cut(s) 365
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
Alw21I GWGCWC 1 cut(s) 10
AlwNI CAGNNNCTG 1 cut(s) 97
Aor51HI AGCGCT 1 cut(s) 331
Asp700I GAANNNNTTC 1 cut(s) 210
AspLEI GCGC 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 254
AsuII TTCGAA 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 10
BbvCI CCTCAGC 1 cut(s) 90
BccI CCATC 2 cut(s) 127, 232
BceAI ACGGC 1 cut(s) 4
BfoI RGCGCY 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 151
BisI GCNGC 1 cut(s) 310
BlsI GCNGC 1 cut(s) 311
BmsI GCATC 1 cut(s) 103
Bpu10I CCTNAGC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 2 cut(s) 227, 265
BseMII CTCAG 3 cut(s) 104, 340, 374
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 10
BspACI CCGC 2 cut(s) 179, 309
BspCNI CTCAG 3 cut(s) 103, 339, 375
BspT104I TTCGAA 1 cut(s) 108
BspTI CTTAAG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 242, 367
BstAFI CTTAAG 1 cut(s) 151
BstBAI YACGTR 1 cut(s) 338
BstBI TTCGAA 1 cut(s) 108
BstDEI CTNAG 3 cut(s) 90, 326, 383
BstDSI CCRYGG 1 cut(s) 20
BstEII GGTNACC 1 cut(s) 242
BstF5I GGATG 2 cut(s) 227, 265
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 1 cut(s) 332
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstPI GGTNACC 1 cut(s) 242
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 227, 265
BtsIMutI CAGTG 1 cut(s) 380
CaiI CAGNNNCTG 1 cut(s) 97
CfoI GCGC 1 cut(s) 332
Csp6I GTAC 1 cut(s) 188
CviJI RGCY 3 cut(s) 135, 223, 379
CviKI_1 RGCY 3 cut(s) 135, 223, 379
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 3 cut(s) 90, 326, 383
Eco47III AGCGCT 1 cut(s) 331
Eco91I GGTNACC 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 242
FaiI YATR 4 cut(s) 51, 293, 348, 373
Fnu4HI GCNGC 1 cut(s) 310
FokI GGATG 2 cut(s) 214, 252
Fsp4HI GCNGC 1 cut(s) 310
GlaI GCGC 1 cut(s) 331
GluI GCNGC 1 cut(s) 310
HaeII RGCGCY 1 cut(s) 333
HhaI GCGC 1 cut(s) 332
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HinfI GANTC 2 cut(s) 147, 206
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 2 cut(s) 28, 173
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 2 cut(s) 11, 98
Hpy8I GTNNAC 2 cut(s) 28, 173
HpyAV CCTTC 2 cut(s) 138, 279
HpyCH4III ACNGT 2 cut(s) 242, 367
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 3 cut(s) 67, 289, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 3 cut(s) 90, 326, 383
HpySE526I ACGT 1 cut(s) 337
HspAI GCGC 1 cut(s) 330
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 6 cut(s) 24, 24, 53, 83, 167, 260
LweI GCATC 1 cut(s) 103
MaeII ACGT 1 cut(s) 337
MaeIII GTNAC 2 cut(s) 242, 358
MboII GAAGA 2 cut(s) 170, 399
MfeI CAATTG 1 cut(s) 275
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 4 cut(s) 34, 83, 275, 303
MlyI GAGTC 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 6 cut(s) 99, 123, 126, 186, 241, 273
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 1 cut(s) 152
MslI CAYNNNNRTG 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 181
MspCI CTTAAG 1 cut(s) 151
MunI CAATTG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 329
NmuCI GTSAC 2 cut(s) 242, 358
NspV TTCGAA 1 cut(s) 108
OliI CACNNNNGTG 1 cut(s) 365
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 311
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 338
PspEI GGTNACC 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 97
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 1 cut(s) 310
SchI GAGTC 1 cut(s) 141
SduI GDGCHC 1 cut(s) 10
SetI ASST 6 cut(s) 115, 130, 137, 178, 340, 344
SfaNI GCATC 1 cut(s) 103
SfuI TTCGAA 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 4 cut(s) 34, 83, 275, 303
SsiI CCGC 2 cut(s) 179, 309
TaaI ACNGT 2 cut(s) 242, 367
TaiI ACGT 1 cut(s) 340
TaqI TCGA 1 cut(s) 108
TasI AATT 4 cut(s) 34, 83, 275, 303
TauI GCSGC 1 cut(s) 312
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TscAI CASTG 1 cut(s) 387
TseFI GTSAC 2 cut(s) 242, 358
Tsp45I GTSAC 2 cut(s) 242, 358
TspDTI ATGAA 1 cut(s) 335
TspRI CASTG 1 cut(s) 387
Vha464I CTTAAG 1 cut(s) 151
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.