Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0015669

Physical Location & Seq

Genomic Coordinates Forward (+)

73858220 .. 73862519

Gene Structure 4300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG529000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGATTTGTTTCTTTCTCAAAAAAGTTCCTTGGAATTCCTTCACTTGTGATTTATGTTGGTTTCAGAAAATGCCATCACGTGTGTCTGTTTTACGAAATTTGGTATTGTCAAAATGTCTTCTAGAGATGGAACTCTTTAAATGTTTATCTGCATTTCTGCTTCAGAATCCTGGGGACACGTTAACAAGACCGGGTGGGGCAATCCAGACTCAAACTCATGCGTTATCGCAAAATATAGAATATAATGATAATGTACAAAATCAGGACTTGAGACGCACGAAGATCTCATGGACTCATGGTGGCAGGCAAGTTGCTATCACAGGATCATGGGACAATTGGCAGACCAGGGAGCCGCTGCAGAATTTAGGTAACGAATTCGTTGTCATAAAGTTGCTTCCATCAGGTTTCTATCAGTACCGCTTCATTGTTGATGGGTGTTGGAGGTGTGCTCCAGACTTGCCATGGATCTATGATGATTCGGGGACTGCCTATAATGTTTTGGATTTGCAGGAATATGGTTTGGAATTGCCTGAACGCCTGTCAAAGTTCGAATCTCCTCCATCCCCACCTTCAAGCTATGATAACAGATGCTTAAGTGAAAATGATTTCAGTAAACCTCCGCCAGAAGTACCACCACAACTACAAGTCCCATTTTTAAACAGGCCACCCTCCTCTTCAAATGATGGTGACCGGCCATTTTCAATGCCTCATTATTCACAATTGAACCATTTGTACATCCAGAACCAAATTGGTGGCGAGTATTTCGCACTCAGTTCTACACATAGGTTTCGTAAAAAATTTGTTACAATGGTGTTATACAAGCCATTGAACAGAGAAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

281

Amino Acids

32.48

Weight (kDa)

7.56

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	93 - 171	4.8e-28	Glycogen recognition site of AMP-activated protein kinase
AMPKBI	PF04739	204 - 275	1.2e-19	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015669)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g40620
malus_domestica	MD09G1126700.v1.1 MD17G1117000.v1.1
prunus_persica	Prupe.3G197500_v2.0.a1 Prupe.3G197500_v2.0.a1
pyrus_communis	pycom09g05090
rosa_chinensis	RchiOBHm_Chr2g0155991
rosa_laevigata	RLG00000020879
rosa_multiflora	Rmu_sc0000260.1_g000025
rosa_roxburghii	Rroxscaffold_2G00093310
rosa_rugosa	Rorug02G0451000
rosa_samantha	Rh2AG517800 Rh2BG529000 Rh2CG502500 Rh2DG538100
rosa_wichuraiana	Rw2G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	353, 418, 620
AclWI	GGATC	2 cut(s)	331, 473
AcoI	YGGCCR	1 cut(s)	692
AcsI	RAATTY	5 cut(s)	34, 97, 361, 374, 797
AcuI	CTGAAG	1 cut(s)	146
AcvI	CACGTG	1 cut(s)	80
AfaI	GTAC	4 cut(s)	255, 416, 630, 734
AflII	CTTAAG	1 cut(s)	592
AflIII	ACRYGT	2 cut(s)	79, 177
AgsI	TTSAA	5 cut(s)	573, 678, 702, 724, 829
AjnI	CCWGG	2 cut(s)	169, 344
AluBI	AGCT	1 cut(s)	576
AluI	AGCT	1 cut(s)	576
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	1 cut(s)	265
AlwI	GGATC	2 cut(s)	331, 473
AoxI	GGCC	2 cut(s)	662, 692
ApeKI	GCWGC	1 cut(s)	355
ApoI	RAATTY	5 cut(s)	34, 97, 361, 374, 797
ArsI	GACNNNNNNTTYG	2 cut(s)	366, 398
Asp700I	GAANNNNTTC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	698
AsuII	TTCGAA	1 cut(s)	549
BbrPI	CACGTG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	6 cut(s)	82, 121, 406, 425, 568, 677
BciT130I	CCWGG	2 cut(s)	171, 346
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	356
BfrI	CTTAAG	1 cut(s)	592
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	2 cut(s)	353, 356
BlsI	GCNGC	2 cut(s)	354, 357
Bme1390I	CCNGG	3 cut(s)	171, 192, 346
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	3 cut(s)	171, 192, 346
BmsI	GCATC	1 cut(s)	578
BpiI	GAAGAC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	433, 465
BpmI	CTGGAG	1 cut(s)	435
Bpu14I	TTCGAA	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	80
BsaJI	CCNNGG	4 cut(s)	29, 170, 345, 461
Bse118I	RCCGGY	1 cut(s)	690
BseBI	CCWGG	2 cut(s)	171, 346
BseDI	CCNNGG	4 cut(s)	29, 170, 345, 461
BseGI	GGATG	2 cut(s)	560, 735
BseMII	CTCAG	1 cut(s)	784
BseRI	GAGGAG	2 cut(s)	546, 661
BseXI	GCAGC	1 cut(s)	342
BshFI	GGCC	2 cut(s)	664, 694
BsiHKAI	GWGCWC	1 cut(s)	451
BsiSI	CCGG	2 cut(s)	191, 691
BslFI	GGGAC	4 cut(s)	188, 344, 496, 632
BsmAI	GTCTC	1 cut(s)	265
BsmBI	CGTCTC	1 cut(s)	265
BsmFI	GGGAC	4 cut(s)	188, 344, 496, 632
BsnI	GGCC	2 cut(s)	664, 694
Bsp119I	TTCGAA	1 cut(s)	549
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp1407I	TGTACA	2 cut(s)	253, 732
Bsp143I	GATC	3 cut(s)	282, 323, 465
Bsp19I	CCATGG	1 cut(s)	461
BspACI	CCGC	3 cut(s)	353, 418, 620
BspANI	GGCC	2 cut(s)	664, 694
BspCNI	CTCAG	1 cut(s)	783
BspLI	GGNNCC	1 cut(s)	351
BspMAI	CTGCAG	1 cut(s)	360
BspPI	GGATC	2 cut(s)	331, 473
BspT104I	TTCGAA	1 cut(s)	549
BspTI	CTTAAG	1 cut(s)	592
BsrFI	RCCGGY	1 cut(s)	690
BsrGI	TGTACA	2 cut(s)	253, 732
BssAI	RCCGGY	1 cut(s)	690
BssECI	CCNNGG	4 cut(s)	29, 170, 345, 461
BssMI	GATC	3 cut(s)	282, 323, 465
BssT1I	CCWWGG	2 cut(s)	29, 461
Bst2UI	CCWGG	2 cut(s)	171, 346
Bst6I	CTCTTC	1 cut(s)	679
BstAFI	CTTAAG	1 cut(s)	592
BstAUI	TGTACA	2 cut(s)	253, 732
BstBAI	YACGTR	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	549
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	770
BstDSI	CCRYGG	1 cut(s)	461
BstEII	GGTNACC	1 cut(s)	686
BstF5I	GGATG	2 cut(s)	560, 735
BstKTI	GATC	3 cut(s)	285, 326, 468
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	3 cut(s)	282, 323, 465
BstNI	CCWGG	2 cut(s)	171, 346
BstPI	GGTNACC	1 cut(s)	686
BstSCI	CCNGG	3 cut(s)	169, 190, 344
BstSFI	CTRYAG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	342
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	2 cut(s)	282, 465
BstXI	CCANNNNNNTGG	1 cut(s)	752
BstYI	RGATCY	2 cut(s)	282, 465
BsuRI	GGCC	2 cut(s)	664, 694
BtgI	CCRYGG	1 cut(s)	461
BtsCI	GGATG	2 cut(s)	560, 735
Cac8I	GCNNGC	1 cut(s)	305
Cfr10I	RCCGGY	1 cut(s)	690
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	4 cut(s)	254, 415, 629, 733
CviAII	CATG	6 cut(s)	218, 288, 296, 327, 462, 843
CviJI	RGCY	5 cut(s)	352, 576, 664, 694, 823
CviKI_1	RGCY	5 cut(s)	352, 576, 664, 694, 823
CviQI	GTAC	4 cut(s)	254, 415, 629, 733
DdeI	CTNAG	1 cut(s)	770
DpnI	GATC	3 cut(s)	284, 325, 467
DpnII	GATC	3 cut(s)	282, 323, 465
DraI	TTTAAA	2 cut(s)	139, 657
EaeI	YGGCCR	1 cut(s)	692
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
EciI	GGCGGA	1 cut(s)	609
Eco130I	CCWWGG	2 cut(s)	29, 461
Eco57I	CTGAAG	1 cut(s)	146
Eco72I	CACGTG	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	686
EcoO65I	GGTNACC	1 cut(s)	686
EcoRI	GAATTC	2 cut(s)	34, 374
EcoRII	CCWGG	2 cut(s)	169, 344
EcoT14I	CCWWGG	2 cut(s)	29, 461
ErhI	CCWWGG	2 cut(s)	29, 461
Esp3I	CGTCTC	1 cut(s)	265
FaeI	CATG	6 cut(s)	221, 291, 299, 330, 465, 846
FaqI	GGGAC	4 cut(s)	188, 344, 496, 632
FatI	CATG	6 cut(s)	217, 287, 295, 326, 461, 842
Fnu4HI	GCNGC	2 cut(s)	353, 356
FokI	GGATG	2 cut(s)	547, 722
Fsp4HI	GCNGC	2 cut(s)	353, 356
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	2 cut(s)	353, 356
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	664, 694
HapII	CCGG	2 cut(s)	191, 691
HgaI	GACGC	1 cut(s)	282
Hin1II	CATG	6 cut(s)	221, 291, 299, 330, 465, 846
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	5 cut(s)	166, 208, 292, 476, 551
HpaI	GTTAAC	1 cut(s)	183
HpaII	CCGG	2 cut(s)	191, 691
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	2 cut(s)	183, 614
Hpy188I	TCNGA	2 cut(s)	66, 165
Hpy188III	TCNNGA	5 cut(s)	122, 205, 263, 452, 739
Hpy8I	GTNNAC	2 cut(s)	183, 614
HpyAV	CCTTC	2 cut(s)	49, 579
HpyCH4IV	ACGT	2 cut(s)	79, 179
HpyCH4V	TGCA	3 cut(s)	152, 358, 508
HpyF3I	CTNAG	1 cut(s)	770
HpySE526I	ACGT	2 cut(s)	79, 179
Hsp92II	CATG	6 cut(s)	221, 291, 299, 330, 465, 846
KspAI	GTTAAC	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	282, 323, 465
LmnI	GCTCC	2 cut(s)	349, 454
Lsp1109I	GCAGC	1 cut(s)	342
LweI	GCATC	1 cut(s)	578
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	2 cut(s)	79, 179
MaeIII	GTNAC	3 cut(s)	368, 686, 802
MalI	GATC	3 cut(s)	284, 325, 467
MboI	GATC	3 cut(s)	282, 323, 465
MboII	GAAGA	3 cut(s)	110, 292, 666
MfeI	CAATTG	2 cut(s)	334, 719
MflI	RGATCY	2 cut(s)	282, 465
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	9 cut(s)	34, 97, 334, 361, 374, 524, 719, 747, 797
MlyI	GAGTC	2 cut(s)	202, 286
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	6 cut(s)	435, 567, 627, 679, 682, 717
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	4 cut(s)	138, 182, 593, 656
MspA1I	CMGCKG	1 cut(s)	355
MspCI	CTTAAG	1 cut(s)	592
MspI	CCGG	2 cut(s)	191, 691
MspR9I	CCNGG	3 cut(s)	171, 192, 346
MunI	CAATTG	2 cut(s)	334, 719
MvaI	CCWGG	2 cut(s)	171, 346
NciI	CCSGG	1 cut(s)	192
NcoI	CCATGG	1 cut(s)	461
NdeII	GATC	3 cut(s)	282, 323, 465
NlaIII	CATG	6 cut(s)	221, 291, 299, 330, 465, 846
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	686
NspV	TTCGAA	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	166, 476, 551
PkrI	GCNGC	2 cut(s)	354, 357
PleI	GAGTC	2 cut(s)	202, 286
PmaCI	CACGTG	1 cut(s)	80
PmlI	CACGTG	1 cut(s)	80
PpsI	GAGTC	2 cut(s)	202, 286
Ppu21I	YACGTR	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	169, 344
PspCI	CACGTG	1 cut(s)	80
PspEI	GGTNACC	1 cut(s)	686
PspGI	CCWGG	2 cut(s)	169, 344
PspN4I	GGNNCC	1 cut(s)	351
PsrI	GAACNNNNNNTAC	2 cut(s)	716, 748
PstI	CTGCAG	1 cut(s)	360
PsuI	RGATCY	2 cut(s)	282, 465
RsaI	GTAC	4 cut(s)	255, 416, 630, 734
RsaNI	GTAC	4 cut(s)	254, 415, 629, 733
SaqAI	TTAA	4 cut(s)	138, 182, 593, 656
SatI	GCNGC	2 cut(s)	353, 356
Sau3AI	GATC	3 cut(s)	282, 323, 465
SchI	GAGTC	2 cut(s)	202, 286
ScrFI	CCNGG	3 cut(s)	171, 192, 346
SduI	GDGCHC	1 cut(s)	451
SetI	ASST	9 cut(s)	82, 182, 370, 406, 446, 571, 578, 619, 788
SfaNI	GCATC	1 cut(s)	578
SfcI	CTRYAG	1 cut(s)	356
SfuI	TTCGAA	1 cut(s)	549
SmlI	CTYRAG	2 cut(s)	268, 592
SmoI	CTYRAG	2 cut(s)	268, 592
Sse9I	AATT	9 cut(s)	34, 97, 334, 361, 374, 524, 719, 747, 797
SsiI	CCGC	3 cut(s)	353, 418, 620
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	3 cut(s)	169, 190, 344
StyI	CCWWGG	2 cut(s)	29, 461
TaiI	ACGT	2 cut(s)	82, 182
TaqI	TCGA	1 cut(s)	549
TasI	AATT	9 cut(s)	34, 97, 334, 361, 374, 524, 719, 747, 797
TatI	WGTACW	2 cut(s)	253, 732
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	3 cut(s)	166, 476, 551
Tru1I	TTAA	4 cut(s)	138, 182, 593, 656
Tru9I	TTAA	4 cut(s)	138, 182, 593, 656
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	1 cut(s)	412
Vha464I	CTTAAG	1 cut(s)	592
XapI	RAATTY	5 cut(s)	34, 97, 361, 374, 797
XbaI	TCTAGA	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	2 cut(s)	459, 746
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.