Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0015669

Physical Location & Seq

Genomic Coordinates Forward (+)

74453482 .. 74457584

Gene Structure 4103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG517800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGATTGCCTCTGTTTTTTTTCTTTTGGATTTTTCTGGTAACTGGGTTCCTTTTCAGTTTTTGTGGTTTTATTGTAAGATGAATCGGAAGATAAATAATGGGTTTCCTTTGTTTTCAGTAATGGGTAATGCCAGTGGTAGAGAGGAAGGAGAAGGCTCTTCTTCTGGAGTTAATAACTTTCAAGAGAATGATGAATCCATGGCTCCCTCACCTCCCCATAACCCCTTCTTCACTTCGGAAAATCCTGGGGACACGTTAACAAGACCGGGTGGGGCAATACAGACTCAAACTCATGCGTTATCGCAAAATATAGAATATAATGATAATGTACAAAATCAGAACTTGAGACGCATGAAGATCTCATGGACTCATGGTGGCAGGCAAGTTGCTATCACAGGATCATGGGACAATTGGCAGACCAGGGAGCCGCTGCAGAATTTAGGTAACGAATTCGTTGTCATAAAGTTGCTTCCATCAGGTTTCTATCAGTACCGCTTCATTGTTGATGGGTGTTGGAGGTGTGCTCCAGACTTGCCATGGATCTATGATGATTCGGGGACTGCCTATAATGTTTTGGATTTGCAGGAATATGGTTTGGAATTGCCTGAACGCCTGTCAAAGTTCGAATCTCCTCCATCCCCACCTTCAAGCTATGATAACAGATGCTTAAGTGAAAATGATTTCAGTAAACCTCCACCAGAAGTACCACCACAACTACAAGTCCGATTTTTAAACAGGCCACCCTCCTCTTCAAATGATGGTGACCGGCCATTTTCAATGCCTCATTATTCACAATTGAACCATTTGTACATCCAGAACCAAATTGGTGGCGAGTATTTCGCACTCAGTTCTACACATAGGTTTCGTAAAAAATTTGTTACAATGGTGTTATACAAGCCATTGAACAGAGAAAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

306

Amino Acids

35.05

Weight (kDa)

5.72

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	118 - 196	1.1e-27	Glycogen recognition site of AMP-activated protein kinase
AMPKBI	PF04739	229 - 300	9.9e-20	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015669)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g40620
malus_domestica	MD09G1126700.v1.1 MD17G1117000.v1.1
prunus_persica	Prupe.3G197500_v2.0.a1 Prupe.3G197500_v2.0.a1
pyrus_communis	pycom09g05090
rosa_chinensis	RchiOBHm_Chr2g0155991
rosa_laevigata	RLG00000020879
rosa_multiflora	Rmu_sc0000260.1_g000025
rosa_roxburghii	Rroxscaffold_2G00093310
rosa_rugosa	Rorug02G0451000
rosa_samantha	Rh2AG517800 Rh2BG529000 Rh2CG502500 Rh2DG538100
rosa_wichuraiana	Rw2G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	428, 493
AclWI	GGATC	2 cut(s)	406, 548
AcoI	YGGCCR	1 cut(s)	767
AcsI	RAATTY	3 cut(s)	436, 449, 872
AfaI	GTAC	4 cut(s)	330, 491, 705, 809
AflII	CTTAAG	1 cut(s)	667
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	6 cut(s)	182, 648, 753, 777, 799, 904
AjnI	CCWGG	2 cut(s)	244, 419
AluBI	AGCT	1 cut(s)	651
AluI	AGCT	1 cut(s)	651
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	2 cut(s)	406, 548
AoxI	GGCC	2 cut(s)	737, 767
ApeKI	GCWGC	1 cut(s)	430
ApoI	RAATTY	3 cut(s)	436, 449, 872
ArsI	GACNNNNNNTTYG	2 cut(s)	441, 473
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	2 cut(s)	201, 773
AsuII	TTCGAA	1 cut(s)	624
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	1 cut(s)	417
BccI	CCATC	4 cut(s)	481, 500, 643, 752
BciT130I	CCWGG	2 cut(s)	246, 421
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	340
BfmI	CTRYAG	1 cut(s)	431
BfrI	CTTAAG	1 cut(s)	667
BglII	AGATCT	1 cut(s)	357
BisI	GCNGC	2 cut(s)	428, 431
BlsI	GCNGC	2 cut(s)	429, 432
Bme1390I	CCNGG	3 cut(s)	246, 267, 421
BmiI	GGNNCC	3 cut(s)	48, 204, 426
BmrFI	CCNGG	3 cut(s)	246, 267, 421
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	653
BmuI	ACTGGG	1 cut(s)	52
BplI	GAGNNNNNCTC	2 cut(s)	508, 540
BpmI	CTGGAG	2 cut(s)	186, 510
Bpu14I	TTCGAA	1 cut(s)	624
BpuEI	CTTGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	267
BsaJI	CCNNGG	4 cut(s)	198, 245, 420, 536
Bse118I	RCCGGY	1 cut(s)	765
Bse1I	ACTGG	2 cut(s)	47, 132
BseBI	CCWGG	2 cut(s)	246, 421
BseDI	CCNNGG	4 cut(s)	198, 245, 420, 536
BseGI	GGATG	2 cut(s)	635, 810
BseMII	CTCAG	1 cut(s)	859
BseNI	ACTGG	2 cut(s)	47, 132
BseRI	GAGGAG	2 cut(s)	621, 736
BseXI	GCAGC	1 cut(s)	417
BshFI	GGCC	2 cut(s)	739, 769
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	2 cut(s)	266, 766
BslFI	GGGAC	3 cut(s)	263, 419, 571
BsmAI	GTCTC	1 cut(s)	340
BsmBI	CGTCTC	1 cut(s)	340
BsmFI	GGGAC	3 cut(s)	263, 419, 571
BsnI	GGCC	2 cut(s)	739, 769
Bsp119I	TTCGAA	1 cut(s)	624
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp1407I	TGTACA	2 cut(s)	328, 807
Bsp143I	GATC	3 cut(s)	357, 398, 540
Bsp19I	CCATGG	2 cut(s)	198, 536
BspACI	CCGC	2 cut(s)	428, 493
BspANI	GGCC	2 cut(s)	739, 769
BspCNI	CTCAG	1 cut(s)	858
BspLI	GGNNCC	3 cut(s)	48, 204, 426
BspMAI	CTGCAG	1 cut(s)	435
BspPI	GGATC	2 cut(s)	406, 548
BspQI	GCTCTTC	1 cut(s)	163
BspT104I	TTCGAA	1 cut(s)	624
BspTI	CTTAAG	1 cut(s)	667
BsrFI	RCCGGY	1 cut(s)	765
BsrGI	TGTACA	2 cut(s)	328, 807
BsrI	ACTGG	2 cut(s)	47, 132
BssAI	RCCGGY	1 cut(s)	765
BssECI	CCNNGG	4 cut(s)	198, 245, 420, 536
BssMI	GATC	3 cut(s)	357, 398, 540
BssT1I	CCWWGG	2 cut(s)	198, 536
Bst2UI	CCWGG	2 cut(s)	246, 421
Bst6I	CTCTTC	2 cut(s)	163, 754
BstAFI	CTTAAG	1 cut(s)	667
BstAUI	TGTACA	2 cut(s)	328, 807
BstBI	TTCGAA	1 cut(s)	624
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	1 cut(s)	845
BstDSI	CCRYGG	2 cut(s)	198, 536
BstEII	GGTNACC	1 cut(s)	761
BstF5I	GGATG	2 cut(s)	635, 810
BstKTI	GATC	3 cut(s)	360, 401, 543
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	3 cut(s)	357, 398, 540
BstNI	CCWGG	2 cut(s)	246, 421
BstPI	GGTNACC	1 cut(s)	761
BstSCI	CCNGG	3 cut(s)	244, 265, 419
BstSFI	CTRYAG	1 cut(s)	431
BstV1I	GCAGC	1 cut(s)	417
BstX2I	RGATCY	2 cut(s)	357, 540
BstXI	CCANNNNNNTGG	1 cut(s)	827
BstYI	RGATCY	2 cut(s)	357, 540
BsuRI	GGCC	2 cut(s)	739, 769
BtgI	CCRYGG	2 cut(s)	198, 536
BtsCI	GGATG	2 cut(s)	635, 810
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	765
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	4 cut(s)	329, 490, 704, 808
CviAII	CATG	7 cut(s)	199, 293, 352, 363, 371, 402, 537
CviJI	RGCY	7 cut(s)	156, 203, 427, 651, 739, 769, 898
CviKI_1	RGCY	7 cut(s)	156, 203, 427, 651, 739, 769, 898
CviQI	GTAC	4 cut(s)	329, 490, 704, 808
DdeI	CTNAG	1 cut(s)	845
DpnI	GATC	3 cut(s)	359, 400, 542
DpnII	GATC	3 cut(s)	357, 398, 540
DraI	TTTAAA	1 cut(s)	732
EaeI	YGGCCR	1 cut(s)	767
Eam1104I	CTCTTC	2 cut(s)	163, 754
EarI	CTCTTC	2 cut(s)	163, 754
Eco130I	CCWWGG	2 cut(s)	198, 536
Eco91I	GGTNACC	1 cut(s)	761
EcoO65I	GGTNACC	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	449
EcoRII	CCWGG	2 cut(s)	244, 419
EcoT14I	CCWWGG	2 cut(s)	198, 536
ErhI	CCWWGG	2 cut(s)	198, 536
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	7 cut(s)	202, 296, 355, 366, 374, 405, 540
FaqI	GGGAC	3 cut(s)	263, 419, 571
FatI	CATG	7 cut(s)	198, 292, 351, 362, 370, 401, 536
Fnu4HI	GCNGC	2 cut(s)	428, 431
FokI	GGATG	2 cut(s)	622, 797
Fsp4HI	GCNGC	2 cut(s)	428, 431
GluI	GCNGC	2 cut(s)	428, 431
GsuI	CTGGAG	2 cut(s)	186, 510
HaeIII	GGCC	2 cut(s)	739, 769
HapII	CCGG	2 cut(s)	266, 766
HgaI	GACGC	1 cut(s)	357
Hin1II	CATG	7 cut(s)	202, 296, 355, 366, 374, 405, 540
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	6 cut(s)	82, 194, 283, 367, 551, 626
HpaI	GTTAAC	1 cut(s)	258
HpaII	CCGG	2 cut(s)	266, 766
HphI	GGTGA	2 cut(s)	201, 773
Hpy166II	GTNNAC	2 cut(s)	258, 689
Hpy188I	TCNGA	4 cut(s)	87, 238, 339, 725
Hpy188III	TCNNGA	4 cut(s)	165, 182, 527, 814
Hpy8I	GTNNAC	2 cut(s)	258, 689
HpyAV	CCTTC	4 cut(s)	140, 146, 235, 654
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	2 cut(s)	433, 583
HpyF3I	CTNAG	1 cut(s)	845
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	7 cut(s)	202, 296, 355, 366, 374, 405, 540
KspAI	GTTAAC	1 cut(s)	258
Kzo9I	GATC	3 cut(s)	357, 398, 540
LguI	GCTCTTC	1 cut(s)	163
LmnI	GCTCC	3 cut(s)	208, 424, 529
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	1 cut(s)	653
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	4 cut(s)	38, 443, 761, 877
MalI	GATC	3 cut(s)	359, 400, 542
MboI	GATC	3 cut(s)	357, 398, 540
MboII	GAAGA	6 cut(s)	100, 150, 153, 220, 367, 741
MfeI	CAATTG	2 cut(s)	409, 794
MflI	RGATCY	2 cut(s)	357, 540
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	7 cut(s)	409, 436, 449, 599, 794, 822, 872
MlyI	GAGTC	2 cut(s)	277, 361
MmeI	TCCRAC	1 cut(s)	494
MseI	TTAA	4 cut(s)	171, 257, 668, 731
MspA1I	CMGCKG	1 cut(s)	430
MspCI	CTTAAG	1 cut(s)	667
MspI	CCGG	2 cut(s)	266, 766
MspR9I	CCNGG	3 cut(s)	246, 267, 421
MunI	CAATTG	2 cut(s)	409, 794
MvaI	CCWGG	2 cut(s)	246, 421
NciI	CCSGG	1 cut(s)	267
NcoI	CCATGG	2 cut(s)	198, 536
NdeII	GATC	3 cut(s)	357, 398, 540
NlaIII	CATG	7 cut(s)	202, 296, 355, 366, 374, 405, 540
NlaIV	GGNNCC	3 cut(s)	48, 204, 426
NmuCI	GTSAC	1 cut(s)	761
NspV	TTCGAA	1 cut(s)	624
PciSI	GCTCTTC	1 cut(s)	163
PfeI	GAWTC	4 cut(s)	82, 194, 551, 626
PkrI	GCNGC	2 cut(s)	429, 432
PleI	GAGTC	2 cut(s)	277, 361
PpsI	GAGTC	2 cut(s)	277, 361
Psp6I	CCWGG	2 cut(s)	244, 419
PspEI	GGTNACC	1 cut(s)	761
PspGI	CCWGG	2 cut(s)	244, 419
PspN4I	GGNNCC	3 cut(s)	48, 204, 426
PsrI	GAACNNNNNNTAC	2 cut(s)	791, 823
PstI	CTGCAG	1 cut(s)	435
PsuI	RGATCY	2 cut(s)	357, 540
RsaI	GTAC	4 cut(s)	330, 491, 705, 809
RsaNI	GTAC	4 cut(s)	329, 490, 704, 808
SapI	GCTCTTC	1 cut(s)	163
SaqAI	TTAA	4 cut(s)	171, 257, 668, 731
SatI	GCNGC	2 cut(s)	428, 431
Sau3AI	GATC	3 cut(s)	357, 398, 540
SchI	GAGTC	2 cut(s)	277, 361
ScrFI	CCNGG	3 cut(s)	246, 267, 421
SduI	GDGCHC	1 cut(s)	526
SetI	ASST	9 cut(s)	214, 257, 445, 481, 521, 646, 653, 694, 863
SfaNI	GCATC	1 cut(s)	653
SfcI	CTRYAG	1 cut(s)	431
SfuI	TTCGAA	1 cut(s)	624
SmlI	CTYRAG	2 cut(s)	343, 667
SmoI	CTYRAG	2 cut(s)	343, 667
Sse9I	AATT	7 cut(s)	409, 436, 449, 599, 794, 822, 872
SsiI	CCGC	2 cut(s)	428, 493
StyD4I	CCNGG	3 cut(s)	244, 265, 419
StyI	CCWWGG	2 cut(s)	198, 536
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	624
TasI	AATT	7 cut(s)	409, 436, 449, 599, 794, 822, 872
TatI	WGTACW	2 cut(s)	328, 807
TauI	GCSGC	1 cut(s)	430
TfiI	GAWTC	4 cut(s)	82, 194, 551, 626
Tru1I	TTAA	4 cut(s)	171, 257, 668, 731
Tru9I	TTAA	4 cut(s)	171, 257, 668, 731
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	761
TseI	GCWGC	1 cut(s)	430
Tsp45I	GTSAC	1 cut(s)	761
TspDTI	ATGAA	4 cut(s)	95, 207, 368, 487
TspRI	CASTG	1 cut(s)	139
Vha464I	CTTAAG	1 cut(s)	667
XapI	RAATTY	3 cut(s)	436, 449, 872
XcmI	CCANNNNNNNNNTGG	2 cut(s)	534, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.