Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0015669

Physical Location & Seq

Genomic Coordinates Reverse (-)

10070268 .. 10076426

Gene Structure 6159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1117000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGTAAGTCGCCAAACACAATAATGGGGAATCCCAGTGGGAGTAGAGATGATGGAGAAGGTCCTCCTGGAGTTAACAACTTTGGAGAGTACTGTGATGGATATGTAGAAGAACCCATGTCTCGGAGCCCATCTCTTTTCTTCACTTCCCGATATCCTGGGGAACCCTTACCAAGACCTGCTGAGGCATCATCGCAACATACAGTAGTTAATCGTAATGTACATGATGAGAAATTGATGTGGACGAAGATCTCATGGAATCACGGTGGAAGCCAAGTTGCTATCACAGGATCATGGGACAATTGGGAGAGTAGGGAGCTCTTGCAGAGTAGAGACAATGATTTCCTTACCATAAAGTTGCTTCCACCAGGTCTCTACCAGTACCATTTCATTGTTGACGGGTGTTTGATGTGTGATCCAGAATGTCCATGGGTCTATGATAATTCGGGGAGTGCGTATAACATCTTGGATTTACAGGAATGTGTTTCAGAATTGCCTCAGCATCTGGCAATGTTCGAACCTCCTCCATCCCCACCTTCAAGCTACGACAACAGACTCTTAAGCGAAGATGATTTCAGTAAACCTCCGCTGGAAGTACCCCCACAACTACACGTAGCATTTCTAAACAAGCCATCATCCTCCAACAACGGCGACCAGCCACCAATGCCTCATCCTTCACAATTGAACCATTTGCACATCCAGAACCAAATTGGCGGCGAGTTTTTTGCACTCAGCTCTACACATAGGTTTCGTAATAAGTTTGTCACAACGGTATTATACAAGCCACGGAGAATAGCAAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

269

Amino Acids

30.15

Weight (kDa)

5.31

Isoelectric Point (pI)

62.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	82 - 160	6.2e-25	Glycogen recognition site of AMP-activated protein kinase
AMPKBI	PF04739	193 - 262	6.3e-19	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015669)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g40620
malus_domestica	MD09G1126700.v1.1 MD17G1117000.v1.1
prunus_persica	Prupe.3G197500_v2.0.a1 Prupe.3G197500_v2.0.a1
pyrus_communis	pycom09g05090
rosa_chinensis	RchiOBHm_Chr2g0155991
rosa_laevigata	RLG00000020879
rosa_multiflora	Rmu_sc0000260.1_g000025
rosa_roxburghii	Rroxscaffold_2G00093310
rosa_rugosa	Rorug02G0451000
rosa_samantha	Rh2AG517800 Rh2BG529000 Rh2CG502500 Rh2DG538100
rosa_wichuraiana	Rw2G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	187
AciI	CCGC	2 cut(s)	587, 714
AclWI	GGATC	2 cut(s)	298, 410
AfaI	GTAC	4 cut(s)	92, 222, 383, 597
AfiI	CCNNNNNNNGG	1 cut(s)	123
AflII	CTTAAG	1 cut(s)	559
AflIII	ACRYGT	1 cut(s)	610
AgsI	TTSAA	2 cut(s)	540, 685
AjnI	CCWGG	3 cut(s)	67, 157, 367
AluBI	AGCT	3 cut(s)	319, 543, 735
AluI	AGCT	3 cut(s)	319, 543, 735
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	3 cut(s)	126, 327, 377
AlwI	GGATC	2 cut(s)	298, 410
AlwNI	CAGNNNCTG	1 cut(s)	505
AspS9I	GGNCC	1 cut(s)	62
AsuII	TTCGAA	1 cut(s)	516
AvaII	GGWCC	1 cut(s)	62
BanII	GRGCYC	2 cut(s)	131, 321
Bbv12I	GWGCWC	1 cut(s)	321
BbvCI	CCTCAGC	2 cut(s)	183, 498
BccI	CCATC	5 cut(s)	47, 92, 139, 535, 640
BceAI	ACGGC	1 cut(s)	664
BcgI	CGANNNNNNTGC	2 cut(s)	707, 741
BciT130I	CCWGG	3 cut(s)	69, 159, 369
BcoDI	GTCTC	3 cut(s)	126, 327, 377
BfrI	CTTAAG	1 cut(s)	559
BfuAI	ACCTGC	1 cut(s)	187
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	1 cut(s)	715
BlsI	GCNGC	1 cut(s)	716
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	69, 159, 369
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	128, 165
BmrFI	CCNGG	3 cut(s)	69, 159, 369
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	2 cut(s)	197, 511
BmuI	ACTGGG	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	118, 150
BpmI	CTGGAG	1 cut(s)	90
Bpu10I	CCTNAGC	2 cut(s)	183, 498
Bpu14I	TTCGAA	1 cut(s)	516
BsaAI	YACGTR	1 cut(s)	613
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	3 cut(s)	158, 428, 785
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse1I	ACTGG	2 cut(s)	36, 379
Bse3DI	GCAATG	1 cut(s)	516
BseBI	CCWGG	3 cut(s)	69, 159, 369
BseDI	CCNNGG	3 cut(s)	158, 428, 785
BseGI	GGATG	4 cut(s)	527, 635, 670, 696
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	3 cut(s)	174, 512, 745
BseNI	ACTGG	2 cut(s)	36, 379
BseRI	GAGGAG	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	3 cut(s)	126, 327, 377
BsmFI	GGGAC	1 cut(s)	311
Bso31I	GGTCTC	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	516
Bsp1286I	GDGCHC	2 cut(s)	131, 321
Bsp1407I	TGTACA	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	249, 290, 415
Bsp19I	CCATGG	1 cut(s)	428
BspACI	CCGC	2 cut(s)	587, 714
BspCNI	CTCAG	3 cut(s)	175, 511, 744
BspLI	GGNNCC	2 cut(s)	128, 165
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	2 cut(s)	298, 410
BspT104I	TTCGAA	1 cut(s)	516
BspTI	CTTAAG	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	516
BsrGI	TGTACA	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	36, 379
BssECI	CCNNGG	3 cut(s)	158, 428, 785
BssMI	GATC	3 cut(s)	249, 290, 415
BssT1I	CCWWGG	1 cut(s)	428
Bst2UI	CCWGG	3 cut(s)	69, 159, 369
Bst4CI	ACNGT	4 cut(s)	95, 205, 266, 772
BstAFI	CTTAAG	1 cut(s)	559
BstAUI	TGTACA	1 cut(s)	220
BstBAI	YACGTR	1 cut(s)	613
BstBI	TTCGAA	1 cut(s)	516
BstDEI	CTNAG	3 cut(s)	183, 498, 731
BstDSI	CCRYGG	2 cut(s)	428, 785
BstF5I	GGATG	4 cut(s)	527, 635, 670, 696
BstKTI	GATC	3 cut(s)	252, 293, 418
BstMAI	GTCTC	3 cut(s)	126, 327, 377
BstMBI	GATC	3 cut(s)	249, 290, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	664
BstNI	CCWGG	3 cut(s)	69, 159, 369
BstSCI	CCNGG	3 cut(s)	67, 157, 367
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BtgI	CCRYGG	2 cut(s)	428, 785
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	4 cut(s)	527, 635, 670, 696
BtsIMutI	CAGTG	1 cut(s)	43
BveI	ACCTGC	1 cut(s)	187
CaiI	CAGNNNCTG	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	62
CsiI	ACCWGGT	1 cut(s)	367
Csp6I	GTAC	4 cut(s)	91, 221, 382, 596
CviAII	CATG	5 cut(s)	118, 224, 255, 294, 429
CviJI	RGCY	8 cut(s)	129, 273, 319, 543, 631, 658, 735, 784
CviKI_1	RGCY	8 cut(s)	129, 273, 319, 543, 631, 658, 735, 784
CviQI	GTAC	4 cut(s)	91, 221, 382, 596
DdeI	CTNAG	3 cut(s)	183, 498, 731
DpnI	GATC	3 cut(s)	251, 292, 417
DpnII	GATC	3 cut(s)	249, 290, 415
Ecl136II	GAGCTC	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	428
Eco24I	GRGCYC	2 cut(s)	131, 321
Eco31I	GGTCTC	1 cut(s)	377
Eco32I	GATATC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	319
EcoICRI	GAGCTC	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	62
EcoRII	CCWGG	3 cut(s)	67, 157, 367
EcoRV	GATATC	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	428
EcoT38I	GRGCYC	2 cut(s)	131, 321
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	5 cut(s)	121, 227, 258, 297, 432
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	5 cut(s)	117, 223, 254, 293, 428
Fnu4HI	GCNGC	1 cut(s)	715
FokI	GGATG	4 cut(s)	514, 622, 657, 683
FriOI	GRGCYC	2 cut(s)	131, 321
Fsp4HI	GCNGC	1 cut(s)	715
GluI	GCNGC	1 cut(s)	715
GsuI	CTGGAG	1 cut(s)	90
Hin1II	CATG	5 cut(s)	121, 227, 258, 297, 432
HincII	GTYRAC	2 cut(s)	76, 397
HindII	GTYRAC	2 cut(s)	76, 397
HinfI	GANTC	3 cut(s)	31, 259, 555
HpaI	GTTAAC	1 cut(s)	76
Hpy166II	GTNNAC	4 cut(s)	76, 243, 397, 581
Hpy188I	TCNGA	2 cut(s)	126, 490
Hpy188III	TCNNGA	3 cut(s)	150, 419, 700
Hpy8I	GTNNAC	4 cut(s)	76, 243, 397, 581
HpyAV	CCTTC	3 cut(s)	53, 546, 684
HpyCH4III	ACNGT	4 cut(s)	95, 205, 266, 772
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	3 cut(s)	325, 694, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	664
HpyF3I	CTNAG	3 cut(s)	183, 498, 731
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	5 cut(s)	121, 227, 258, 297, 432
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	249, 290, 415
LmnI	GCTCC	2 cut(s)	126, 316
LweI	GCATC	2 cut(s)	197, 511
MabI	ACCWGGT	1 cut(s)	367
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	3 cut(s)	251, 292, 417
MboI	GATC	3 cut(s)	249, 290, 415
MboII	GAAGA	4 cut(s)	122, 133, 259, 578
MfeI	CAATTG	2 cut(s)	301, 680
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	2 cut(s)	131, 321
MluCI	AATT	6 cut(s)	233, 301, 442, 491, 680, 708
MlyI	GAGTC	1 cut(s)	549
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	8 cut(s)	75, 178, 507, 531, 534, 594, 649, 678
MseI	TTAA	3 cut(s)	75, 210, 560
MslI	CAYNNNNRTG	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	589
MspCI	CTTAAG	1 cut(s)	559
MspR9I	CCNGG	3 cut(s)	69, 159, 369
MunI	CAATTG	2 cut(s)	301, 680
MvaI	CCWGG	3 cut(s)	69, 159, 369
MwoI	GCNNNNNNNGC	1 cut(s)	664
NcoI	CCATGG	1 cut(s)	428
NdeII	GATC	3 cut(s)	249, 290, 415
NlaIII	CATG	5 cut(s)	121, 227, 258, 297, 432
NlaIV	GGNNCC	2 cut(s)	128, 165
NmuCI	GTSAC	1 cut(s)	763
NspV	TTCGAA	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	452
PfeI	GAWTC	2 cut(s)	31, 259
PfoI	TCCNGGA	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	716
PleI	GAGTC	1 cut(s)	549
PpsI	GAGTC	1 cut(s)	549
Ppu21I	YACGTR	1 cut(s)	613
PpuMI	RGGWCCY	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	62
Psp6I	CCWGG	3 cut(s)	67, 157, 367
PspGI	CCWGG	3 cut(s)	67, 157, 367
PspN4I	GGNNCC	2 cut(s)	128, 165
PspPI	GGNCC	1 cut(s)	62
PspPPI	RGGWCCY	1 cut(s)	62
PstNI	CAGNNNCTG	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	249
RsaI	GTAC	4 cut(s)	92, 222, 383, 597
RsaNI	GTAC	4 cut(s)	91, 221, 382, 596
RseI	CAYNNNNRTG	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	75, 210, 560
SatI	GCNGC	1 cut(s)	715
Sau3AI	GATC	3 cut(s)	249, 290, 415
Sau96I	GGNCC	1 cut(s)	62
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	549
ScrFI	CCNGG	3 cut(s)	69, 159, 369
SduI	GDGCHC	2 cut(s)	131, 321
SexAI	ACCWGGT	1 cut(s)	367
SfaNI	GCATC	2 cut(s)	197, 511
SfuI	TTCGAA	1 cut(s)	516
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
Sse9I	AATT	6 cut(s)	233, 301, 442, 491, 680, 708
SsiI	CCGC	2 cut(s)	587, 714
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	67, 157, 367
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	4 cut(s)	95, 205, 266, 772
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	1 cut(s)	516
TasI	AATT	6 cut(s)	233, 301, 442, 491, 680, 708
TatI	WGTACW	2 cut(s)	90, 220
TauI	GCSGC	1 cut(s)	717
TfiI	GAWTC	2 cut(s)	31, 259
Tru1I	TTAA	3 cut(s)	75, 210, 560
Tru9I	TTAA	3 cut(s)	75, 210, 560
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	763
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	1 cut(s)	379
TspGWI	ACGGA	1 cut(s)	802
TspRI	CASTG	1 cut(s)	43
Vha464I	CTTAAG	1 cut(s)	559
VpaK11BI	GGWCC	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	2 cut(s)	426, 707
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.