Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015669

Physical Location & Seq

Genomic Coordinates Forward (+)

20779798 .. 20783304

Gene Structure 3507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G197500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGTATGTCATCAATCAAAAACCTAATAATGGGTAATGCCAGTGGTAGAAAAGATGGAGAAGGCCCTTCTGAAGTTGACAACTTTCATGAGTATGATGGATATGTAGAACCCATGGCTCACTCTCCTCCCCATAGCCCCAGAGCTTTCCACCCATCTCTCTTCTTCACTTCACAAAATCCTGGGGACCCCTTACCAAGACCTCCTGAGGCATTATCACAACATTCAGTTTATAATGAATATGTACACAACGAGAAATTGATACGGGCAAAGATATCATGGAACCATGGTGGTAGGCAAGTTGCTATCACAGGATCATGGGACAATTGGGAGACCAGTGAACTCATGCAGAGTATTGGCACAGATTTCGTTATCTTAAAGTTGCTTCCATCAGGTCTCTACCAGTACCGCTTCATTGTTGACGGGTGTTTTAGATGTGCTGCAGACTTGCCATGGGTCTATGATAATTCAGGGAGTGCCTATAATGTTTTGGACTTGCAGGAATGTGTTTCAGATTTGCGTGAGCGTCTCGCAAAGTTCGAATCTCCTCCATCCCCACCTTCAAGCTACGATAACAGGCACTTAAGTGAAGATGATTTCAGTAAACCTCCGCCAGAAGTACCCCCACAGCTCCAAGAAGCATTTTTGAACAAGCCACCCTCCTCAAATGGTGGTGACCAGCCATTGCCAAAGCCTCATCATTCACAATTGAACCATTTGCACATCCAGAACCATGTTGGTGGCAAGTTTTTTGCACTCAGCTCTACACATAGGTTTCGTCAAAAACTTGTTACGGCGGTATTATACAAGCCATTGAGAAGAGCAAATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

278

Amino Acids

31.19

Weight (kDa)

6.42

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015669)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g40620
malus_domestica	MD09G1126700.v1.1 MD17G1117000.v1.1
prunus_persica	Prupe.3G197500_v2.0.a1 Prupe.3G197500_v2.0.a1
pyrus_communis	pycom09g05090
rosa_chinensis	RchiOBHm_Chr2g0155991
rosa_laevigata	RLG00000020879
rosa_multiflora	Rmu_sc0000260.1_g000025
rosa_roxburghii	Rroxscaffold_2G00093310
rosa_rugosa	Rorug02G0451000
rosa_samantha	Rh2AG517800 Rh2BG529000 Rh2CG502500 Rh2DG538100
rosa_wichuraiana	Rw2G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AciI	CCGC	3 cut(s)	409, 611, 797
AclWI	GGATC	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	3 cut(s)	246, 407, 621
AfiI	CCNNNNNNNGG	1 cut(s)	31
AflII	CTTAAG	1 cut(s)	583
AgsI	TTSAA	3 cut(s)	564, 649, 712
AjnI	CCWGG	1 cut(s)	181
AleI	CACNNNNGTG	1 cut(s)	585
AluBI	AGCT	4 cut(s)	146, 567, 631, 762
AluI	AGCT	4 cut(s)	146, 567, 631, 762
Alw26I	GTCTC	3 cut(s)	326, 401, 533
AlwI	GGATC	1 cut(s)	322
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	65, 187
AsuHPI	GGTGA	1 cut(s)	686
AsuII	TTCGAA	1 cut(s)	540
AvaII	GGWCC	1 cut(s)	187
AxyI	CCTNAGG	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	5 cut(s)	50, 92, 163, 397, 559
BceAI	ACGGC	1 cut(s)	810
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BciT130I	CCWGG	1 cut(s)	183
BcoDI	GTCTC	3 cut(s)	326, 401, 533
BfmI	CTRYAG	1 cut(s)	441
BfrI	CTTAAG	1 cut(s)	583
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	2 cut(s)	65, 187
BmiI	GGNNCC	3 cut(s)	188, 189, 284
BmrFI	CCNGG	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	540
BsaI	GGTCTC	2 cut(s)	326, 401
BsaJI	CCNNGG	4 cut(s)	114, 182, 286, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	3 cut(s)	42, 336, 403
Bse21I	CCTNAGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	683
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	4 cut(s)	114, 182, 286, 452
BseGI	GGATG	2 cut(s)	551, 723
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	683
BseMII	CTCAG	2 cut(s)	198, 772
BseNI	ACTGG	3 cut(s)	42, 336, 403
BseRI	GAGGAG	3 cut(s)	117, 537, 652
BseXI	GCAGC	1 cut(s)	427
BshFI	GGCC	1 cut(s)	66
BslFI	GGGAC	2 cut(s)	200, 335
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	3 cut(s)	326, 401, 533
BsmBI	CGTCTC	1 cut(s)	533
BsmFI	GGGAC	2 cut(s)	200, 335
BsnI	GGCC	1 cut(s)	66
Bso31I	GGTCTC	2 cut(s)	326, 401
Bsp119I	TTCGAA	1 cut(s)	540
Bsp1407I	TGTACA	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	314
Bsp19I	CCATGG	3 cut(s)	114, 286, 452
BspACI	CCGC	3 cut(s)	409, 611, 797
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	2 cut(s)	199, 771
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	188, 189, 284
BspMAI	CTGCAG	1 cut(s)	445
BspPI	GGATC	1 cut(s)	322
BspQI	GCTCTTC	1 cut(s)	814
BspT104I	TTCGAA	1 cut(s)	540
BspTI	CTTAAG	1 cut(s)	583
BspTNI	GGTCTC	2 cut(s)	326, 401
BsrDI	GCAATG	1 cut(s)	683
BsrGI	TGTACA	1 cut(s)	244
BsrI	ACTGG	3 cut(s)	42, 336, 403
BssECI	CCNNGG	4 cut(s)	114, 182, 286, 452
BssMI	GATC	1 cut(s)	314
BssT1I	CCWWGG	3 cut(s)	114, 286, 452
Bst2UI	CCWGG	1 cut(s)	183
Bst6I	CTCTTC	2 cut(s)	167, 814
BstAFI	CTTAAG	1 cut(s)	583
BstAUI	TGTACA	1 cut(s)	244
BstBI	TTCGAA	1 cut(s)	540
BstDEI	CTNAG	2 cut(s)	207, 758
BstDSI	CCRYGG	3 cut(s)	114, 286, 452
BstEII	GGTNACC	1 cut(s)	674
BstF5I	GGATG	2 cut(s)	551, 723
BstKTI	GATC	1 cut(s)	317
BstMAI	GTCTC	3 cut(s)	326, 401, 533
BstMBI	GATC	1 cut(s)	314
BstNI	CCWGG	1 cut(s)	183
BstPI	GGTNACC	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	740
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	3 cut(s)	114, 286, 452
BtsCI	GGATG	2 cut(s)	551, 723
BtsIMutI	CAGTG	2 cut(s)	49, 343
CciI	TCATGA	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	65, 187
CseI	GACGC	1 cut(s)	515
Csp6I	GTAC	3 cut(s)	245, 406, 620
CviAII	CATG	8 cut(s)	89, 115, 279, 287, 318, 346, 453, 734
CviQI	GTAC	3 cut(s)	245, 406, 620
DdeI	CTNAG	2 cut(s)	207, 758
DpnI	GATC	1 cut(s)	316
DpnII	GATC	1 cut(s)	314
Eam1104I	CTCTTC	2 cut(s)	167, 814
EarI	CTCTTC	2 cut(s)	167, 814
EciI	GGCGGA	1 cut(s)	600
Eco130I	CCWWGG	3 cut(s)	114, 286, 452
Eco31I	GGTCTC	2 cut(s)	326, 401
Eco32I	GATATC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	93
Eco81I	CCTNAGG	1 cut(s)	207
Eco91I	GGTNACC	1 cut(s)	674
EcoO109I	RGGNCCY	2 cut(s)	65, 187
EcoO65I	GGTNACC	1 cut(s)	674
EcoRII	CCWGG	1 cut(s)	181
EcoRV	GATATC	1 cut(s)	276
EcoT14I	CCWWGG	3 cut(s)	114, 286, 452
ErhI	CCWWGG	3 cut(s)	114, 286, 452
Esp3I	CGTCTC	1 cut(s)	533
FaeI	CATG	8 cut(s)	92, 118, 282, 290, 321, 349, 456, 737
FaqI	GGGAC	2 cut(s)	200, 335
FatI	CATG	8 cut(s)	88, 114, 278, 286, 317, 345, 452, 733
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	2 cut(s)	538, 710
Fsp4HI	GCNGC	1 cut(s)	441
GluI	GCNGC	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	66
HgaI	GACGC	1 cut(s)	515
Hin1II	CATG	8 cut(s)	92, 118, 282, 290, 321, 349, 456, 737
HincII	GTYRAC	2 cut(s)	79, 421
HindII	GTYRAC	2 cut(s)	79, 421
HinfI	GANTC	1 cut(s)	542
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	5 cut(s)	79, 247, 341, 421, 605
Hpy188I	TCNGA	2 cut(s)	73, 514
Hpy188III	TCNNGA	3 cut(s)	89, 206, 727
Hpy8I	GTNNAC	5 cut(s)	79, 247, 341, 421, 605
HpyAV	CCTTC	3 cut(s)	56, 78, 570
HpyCH4V	TGCA	5 cut(s)	349, 443, 499, 721, 755
HpyF3I	CTNAG	2 cut(s)	207, 758
Hsp92II	CATG	8 cut(s)	92, 118, 282, 290, 321, 349, 456, 737
KflI	GGGWCCC	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	314
LguI	GCTCTTC	1 cut(s)	814
LmnI	GCTCC	1 cut(s)	636
Lsp1109I	GCAGC	1 cut(s)	427
MaeIII	GTNAC	2 cut(s)	674, 790
MalI	GATC	1 cut(s)	316
MboI	GATC	1 cut(s)	314
MboII	GAAGA	4 cut(s)	154, 157, 602, 831
MfeI	CAATTG	2 cut(s)	325, 707
MluCI	AATT	4 cut(s)	257, 325, 466, 707
MnlI	CCTC	8 cut(s)	138, 202, 213, 558, 618, 670, 673, 705
MseI	TTAA	2 cut(s)	377, 584
MslI	CAYNNNNRTG	3 cut(s)	93, 585, 738
MspCI	CTTAAG	1 cut(s)	583
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	2 cut(s)	325, 707
MvaI	CCWGG	1 cut(s)	183
NcoI	CCATGG	3 cut(s)	114, 286, 452
NdeII	GATC	1 cut(s)	314
NlaIII	CATG	8 cut(s)	92, 118, 282, 290, 321, 349, 456, 737
NlaIV	GGNNCC	3 cut(s)	188, 189, 284
NmuCI	GTSAC	1 cut(s)	674
NspV	TTCGAA	1 cut(s)	540
OliI	CACNNNNGTG	1 cut(s)	585
PagI	TCATGA	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	814
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	542
PkrI	GCNGC	1 cut(s)	442
PpuMI	RGGWCCY	1 cut(s)	187
PsiI	TTATAA	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	181
PspEI	GGTNACC	1 cut(s)	674
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	3 cut(s)	188, 189, 284
PspPI	GGNCC	2 cut(s)	65, 187
PspPPI	RGGWCCY	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	445
RsaI	GTAC	3 cut(s)	246, 407, 621
RsaNI	GTAC	3 cut(s)	245, 406, 620
RseI	CAYNNNNRTG	3 cut(s)	93, 585, 738
SapI	GCTCTTC	1 cut(s)	814
SaqAI	TTAA	2 cut(s)	377, 584
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	1 cut(s)	314
Sau96I	GGNCC	2 cut(s)	65, 187
ScrFI	CCNGG	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	441
SfuI	TTCGAA	1 cut(s)	540
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	3 cut(s)	93, 585, 738
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
Sse9I	AATT	4 cut(s)	257, 325, 466, 707
SsiI	CCGC	3 cut(s)	409, 611, 797
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	3 cut(s)	114, 286, 452
TaqI	TCGA	1 cut(s)	540
TasI	AATT	4 cut(s)	257, 325, 466, 707
TatI	WGTACW	1 cut(s)	244
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	2 cut(s)	377, 584
Tru9I	TTAA	2 cut(s)	377, 584
TscAI	CASTG	2 cut(s)	49, 343
TseFI	GTSAC	1 cut(s)	674
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	674
TspDTI	ATGAA	3 cut(s)	77, 252, 403
TspRI	CASTG	2 cut(s)	49, 343
Vha464I	CTTAAG	1 cut(s)	583
VpaK11BI	GGWCC	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.