Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0015669

Physical Location & Seq

Genomic Coordinates Forward (+)

68989261 .. 68992254

Gene Structure 2994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G042630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGTAATGGGTAATGCCAGTGGTAGAGAGGAAGGAGAAGGCTCTTCTTCTGGAGTTAATAACTTTCAAGAGAATGATGAATCCATGGCTCCCTCACCTCCCCATAACCCCTTCTTCACTTCACAAAATCCTGGGGACACGTTAACAAGACCGGGTGGGGCAATACAGACTCAAACTCATGCGTTATCGCAAAATATAGAATATAATGATAATGTACAAAATCAGAACTTGAGACGCATGAAGATCTCATGGACTCATGGTGGCAGGCAAGTTGCTATCACAGGATCATGGGACAATTGGCAGACCAGGGAGCCGCTGCAGAATTTAGGTAATGAATTCGTTGTCATAAAGTTGCTTCCATCAGGTTTCTATCAGTACCGCTTCATTGTTGATGGGTGTTGGAGGTGTGCTCCAGACTTGCCATGGATCTATGATGATTCGGGGACTGCCTATAATGTTTTGGATTTGCAGGAATATGGTTTGGAATTGCCTGAACGCCTGTCAAAGTTCGAATCTCCTCCATCCCCACCTTCAAGCTATGATAACAGATGCTTAAGTGAAAATGATTTCAGTAAACCTCCGCCAGAAGTACCACCACAACTACAAGTCCCATTTTTAAACAGGCTACCCTCCTCTTCAAATGATGGTGACCGCCCATTTTCAATGCCTCATTATTCACAATTGAACCATTTGTACATCCAGAACCAAATTGGTGGCGAGTATTTCGCACTCAGTTCTACACATAGGTTTCGTAAAAAATTTGTTACAATGGTGTTATACAAGCCATTGAACAGAGAAAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

268

Amino Acids

30.43

Weight (kDa)

5.39

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPK1_CBM	PF16561	80 - 158	8.8e-28	Glycogen recognition site of AMP-activated protein kinase
AMPKBI	PF04739	191 - 262	1.7e-19	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015669)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g40620
malus_domestica	MD09G1126700.v1.1 MD17G1117000.v1.1
prunus_persica	Prupe.3G197500_v2.0.a1 Prupe.3G197500_v2.0.a1
pyrus_communis	pycom09g05090
rosa_chinensis	RchiOBHm_Chr2g0155991
rosa_laevigata	RLG00000020879
rosa_multiflora	Rmu_sc0000260.1_g000025
rosa_roxburghii	Rroxscaffold_2G00093310
rosa_rugosa	Rorug02G0451000
rosa_samantha	Rh2AG517800 Rh2BG529000 Rh2CG502500 Rh2DG538100
rosa_wichuraiana	Rw2G042630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	314, 379, 581, 652
AclWI	GGATC	2 cut(s)	292, 434
AcsI	RAATTY	3 cut(s)	322, 335, 758
AfaI	GTAC	4 cut(s)	216, 377, 591, 695
AflII	CTTAAG	1 cut(s)	553
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	6 cut(s)	68, 534, 639, 663, 685, 790
AjnI	CCWGG	2 cut(s)	130, 305
AluBI	AGCT	1 cut(s)	537
AluI	AGCT	1 cut(s)	537
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	2 cut(s)	292, 434
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	3 cut(s)	322, 335, 758
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	87, 659
AsuII	TTCGAA	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	1 cut(s)	303
BccI	CCATC	4 cut(s)	367, 386, 529, 638
BciT130I	CCWGG	2 cut(s)	132, 307
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	226
BfmI	CTRYAG	1 cut(s)	317
BfrI	CTTAAG	1 cut(s)	553
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	2 cut(s)	314, 317
BlsI	GCNGC	2 cut(s)	315, 318
Bme1390I	CCNGG	3 cut(s)	132, 153, 307
BmiI	GGNNCC	2 cut(s)	90, 312
BmrFI	CCNGG	3 cut(s)	132, 153, 307
BmsI	GCATC	1 cut(s)	539
BplI	GAGNNNNNCTC	2 cut(s)	394, 426
BpmI	CTGGAG	2 cut(s)	72, 396
Bpu14I	TTCGAA	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	250
BpuMI	CCSGG	1 cut(s)	153
BsaJI	CCNNGG	4 cut(s)	84, 131, 306, 422
Bse1I	ACTGG	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	132, 307
BseDI	CCNNGG	4 cut(s)	84, 131, 306, 422
BseGI	GGATG	2 cut(s)	521, 696
BseMII	CTCAG	1 cut(s)	745
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	2 cut(s)	507, 622
BseXI	GCAGC	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	412
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	4 cut(s)	149, 305, 457, 593
BsmAI	GTCTC	1 cut(s)	226
BsmBI	CGTCTC	1 cut(s)	226
BsmFI	GGGAC	4 cut(s)	149, 305, 457, 593
Bsp119I	TTCGAA	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp1407I	TGTACA	2 cut(s)	214, 693
Bsp143I	GATC	3 cut(s)	243, 284, 426
Bsp19I	CCATGG	2 cut(s)	84, 422
BspACI	CCGC	4 cut(s)	314, 379, 581, 652
BspCNI	CTCAG	1 cut(s)	744
BspLI	GGNNCC	2 cut(s)	90, 312
BspMAI	CTGCAG	1 cut(s)	321
BspPI	GGATC	2 cut(s)	292, 434
BspQI	GCTCTTC	1 cut(s)	49
BspT104I	TTCGAA	1 cut(s)	510
BspTI	CTTAAG	1 cut(s)	553
BsrGI	TGTACA	2 cut(s)	214, 693
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	4 cut(s)	84, 131, 306, 422
BssMI	GATC	3 cut(s)	243, 284, 426
BssT1I	CCWWGG	2 cut(s)	84, 422
Bst2UI	CCWGG	2 cut(s)	132, 307
Bst6I	CTCTTC	2 cut(s)	49, 640
BstAFI	CTTAAG	1 cut(s)	553
BstAUI	TGTACA	2 cut(s)	214, 693
BstBI	TTCGAA	1 cut(s)	510
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	731
BstDSI	CCRYGG	2 cut(s)	84, 422
BstEII	GGTNACC	1 cut(s)	647
BstF5I	GGATG	2 cut(s)	521, 696
BstKTI	GATC	3 cut(s)	246, 287, 429
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	3 cut(s)	243, 284, 426
BstNI	CCWGG	2 cut(s)	132, 307
BstPI	GGTNACC	1 cut(s)	647
BstSCI	CCNGG	3 cut(s)	130, 151, 305
BstSFI	CTRYAG	1 cut(s)	317
BstV1I	GCAGC	1 cut(s)	303
BstX2I	RGATCY	2 cut(s)	243, 426
BstXI	CCANNNNNNTGG	1 cut(s)	713
BstYI	RGATCY	2 cut(s)	243, 426
BtgI	CCRYGG	2 cut(s)	84, 422
BtsCI	GGATG	2 cut(s)	521, 696
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	266
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	4 cut(s)	215, 376, 590, 694
CviAII	CATG	7 cut(s)	85, 179, 238, 249, 257, 288, 423
CviJI	RGCY	6 cut(s)	42, 89, 313, 537, 625, 784
CviKI_1	RGCY	6 cut(s)	42, 89, 313, 537, 625, 784
CviQI	GTAC	4 cut(s)	215, 376, 590, 694
DdeI	CTNAG	1 cut(s)	731
DpnI	GATC	3 cut(s)	245, 286, 428
DpnII	GATC	3 cut(s)	243, 284, 426
DraI	TTTAAA	1 cut(s)	618
Eam1104I	CTCTTC	2 cut(s)	49, 640
EarI	CTCTTC	2 cut(s)	49, 640
EciI	GGCGGA	1 cut(s)	570
Eco130I	CCWWGG	2 cut(s)	84, 422
Eco91I	GGTNACC	1 cut(s)	647
EcoO65I	GGTNACC	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	130, 305
EcoT14I	CCWWGG	2 cut(s)	84, 422
ErhI	CCWWGG	2 cut(s)	84, 422
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	7 cut(s)	88, 182, 241, 252, 260, 291, 426
FaqI	GGGAC	4 cut(s)	149, 305, 457, 593
FatI	CATG	7 cut(s)	84, 178, 237, 248, 256, 287, 422
Fnu4HI	GCNGC	2 cut(s)	314, 317
FokI	GGATG	2 cut(s)	508, 683
Fsp4HI	GCNGC	2 cut(s)	314, 317
GluI	GCNGC	2 cut(s)	314, 317
GsuI	CTGGAG	2 cut(s)	72, 396
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	243
Hin1II	CATG	7 cut(s)	88, 182, 241, 252, 260, 291, 426
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	5 cut(s)	80, 169, 253, 437, 512
HpaI	GTTAAC	1 cut(s)	144
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	2 cut(s)	87, 659
Hpy166II	GTNNAC	2 cut(s)	144, 575
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	4 cut(s)	51, 68, 413, 700
Hpy8I	GTNNAC	2 cut(s)	144, 575
HpyAV	CCTTC	4 cut(s)	26, 32, 121, 540
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	2 cut(s)	319, 469
HpyF3I	CTNAG	1 cut(s)	731
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	7 cut(s)	88, 182, 241, 252, 260, 291, 426
KspAI	GTTAAC	1 cut(s)	144
Kzo9I	GATC	3 cut(s)	243, 284, 426
LguI	GCTCTTC	1 cut(s)	49
LmnI	GCTCC	3 cut(s)	94, 310, 415
Lsp1109I	GCAGC	1 cut(s)	303
LweI	GCATC	1 cut(s)	539
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	2 cut(s)	647, 763
MalI	GATC	3 cut(s)	245, 286, 428
MboI	GATC	3 cut(s)	243, 284, 426
MboII	GAAGA	5 cut(s)	36, 39, 106, 253, 627
MfeI	CAATTG	2 cut(s)	295, 680
MflI	RGATCY	2 cut(s)	243, 426
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	7 cut(s)	295, 322, 335, 485, 680, 708, 758
MlyI	GAGTC	2 cut(s)	163, 247
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	9 cut(s)	22, 103, 108, 396, 528, 588, 640, 643, 678
MseI	TTAA	4 cut(s)	57, 143, 554, 617
MspA1I	CMGCKG	1 cut(s)	316
MspCI	CTTAAG	1 cut(s)	553
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	3 cut(s)	132, 153, 307
MunI	CAATTG	2 cut(s)	295, 680
MvaI	CCWGG	2 cut(s)	132, 307
NciI	CCSGG	1 cut(s)	153
NcoI	CCATGG	2 cut(s)	84, 422
NdeII	GATC	3 cut(s)	243, 284, 426
NlaIII	CATG	7 cut(s)	88, 182, 241, 252, 260, 291, 426
NlaIV	GGNNCC	2 cut(s)	90, 312
NmuCI	GTSAC	1 cut(s)	647
NspV	TTCGAA	1 cut(s)	510
PciSI	GCTCTTC	1 cut(s)	49
PfeI	GAWTC	3 cut(s)	80, 437, 512
PkrI	GCNGC	2 cut(s)	315, 318
PleI	GAGTC	2 cut(s)	163, 247
PpsI	GAGTC	2 cut(s)	163, 247
Psp6I	CCWGG	2 cut(s)	130, 305
PspEI	GGTNACC	1 cut(s)	647
PspGI	CCWGG	2 cut(s)	130, 305
PspN4I	GGNNCC	2 cut(s)	90, 312
PsrI	GAACNNNNNNTAC	2 cut(s)	677, 709
PstI	CTGCAG	1 cut(s)	321
PsuI	RGATCY	2 cut(s)	243, 426
RsaI	GTAC	4 cut(s)	216, 377, 591, 695
RsaNI	GTAC	4 cut(s)	215, 376, 590, 694
SapI	GCTCTTC	1 cut(s)	49
SaqAI	TTAA	4 cut(s)	57, 143, 554, 617
SatI	GCNGC	2 cut(s)	314, 317
Sau3AI	GATC	3 cut(s)	243, 284, 426
SchI	GAGTC	2 cut(s)	163, 247
ScrFI	CCNGG	3 cut(s)	132, 153, 307
SduI	GDGCHC	1 cut(s)	412
SetI	ASST	9 cut(s)	100, 143, 331, 367, 407, 532, 539, 580, 749
SfaNI	GCATC	1 cut(s)	539
SfcI	CTRYAG	1 cut(s)	317
SfuI	TTCGAA	1 cut(s)	510
SmlI	CTYRAG	2 cut(s)	229, 553
SmoI	CTYRAG	2 cut(s)	229, 553
Sse9I	AATT	7 cut(s)	295, 322, 335, 485, 680, 708, 758
SsiI	CCGC	4 cut(s)	314, 379, 581, 652
StyD4I	CCNGG	3 cut(s)	130, 151, 305
StyI	CCWWGG	2 cut(s)	84, 422
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	510
TasI	AATT	7 cut(s)	295, 322, 335, 485, 680, 708, 758
TatI	WGTACW	2 cut(s)	214, 693
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	3 cut(s)	80, 437, 512
Tru1I	TTAA	4 cut(s)	57, 143, 554, 617
Tru9I	TTAA	4 cut(s)	57, 143, 554, 617
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	4 cut(s)	93, 254, 348, 373
TspRI	CASTG	1 cut(s)	25
Vha464I	CTTAAG	1 cut(s)	553
XapI	RAATTY	3 cut(s)	322, 335, 758
XcmI	CCANNNNNNNNNTGG	2 cut(s)	420, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.