FvH4_6g41340

threonine-tRNA ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
32524666 .. 32528632
3967 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41340.t2

Sequence Viewer

Length: 1281 bp
ATGTTGCAGAGGATCTATGGCACTGCATGGGAGAATGAAGAACAATTGCAGGCATACCTTCATTTCAAGGAGGAGGCTAAACGCCGAGATCACCGGCGCCTCGGTCAAGTTCTTGATCTGTTCTCTATACAGAATGATGCTGGTGGAGGTTTGGTGTTCTGGCATCCAAAGGGTGCTATTGTGAGGCATGTAATAGAAGATTTGTGGAAAAAGACACACATAGAGCGTGGTTATGATCTGCTATATACTCCACATGTTGCAAAGGCGGATCTTTGGCAGATAAGTGGTCATCTGGATTTCTACAGAGAAAATATGTACAATCAGATGGATGTTGAAGATGAACTTTATCAACTTCGACCGATGAACTGCCCTTATCATATCTTGATTTACAAAAGGAGGCGTCACTCTTACAATGACTTTCCTATTAGAGTTGCTGAGTTGGGAACAGTATATAGATATGAATTATCTGGAAGCTTACATGGCCTTTTCCGTGTAAGAGGTTTTACTCAGGATGATGCTCACATATTTTGCCTAGAAGACCAGATCAAAGATGAAATCAGGGGTGTCTTAGATCTTACGGAAGAGTTATTATTGAAATTTGGCTTCAGCAAATATGAAGTTAATCTATCCACGAGGCCGGAGAAATCTGTTGGAGACGATGATATATGGGAGAAAGCAACATCTGCCCTTAGAGATGCCTTGGAGGATAAGGGTTGGAGCTATCAAATTGATGATGGTGGTGGTGCTTTTTATGGCCCGAAAATTGATCTTAAGATTGAAGACGCTCTTGGAAGGAAGTGGCAGTGCTCAACTATACAGGTTGATTTTAACCTACCACAGCGATTTGACATAACATATATTGACTCAAATTCAGAAAAGAAGCGGCCTATCATGATTCATAGAGCTGTTCTTGGGTCCTTGGAGCGGTTCTTTGGAGTCCTTATAGAGCATTATGCTGGGGATTTTCCATTATGGCTGTCTCCAGTGCAAGCTCATGTTTTACCAGTGACAGACACTCAGCTGGATTACTGCAAAGAGCTAACCAACAAACTGAAAGTAAGTGGTATTCGGGGTGAACTTTGCCATGGCGAACGACTGCCAAAGTTGATCAGGAATTCAGAGATGCTCAAAATTCCACTAATGGCTGTTGTTGGTGCCAAGGAAGTTGAATCTGGAACTGTTACAGTAAGATCCAGGTCTGGTGACGATCCAGGGACCATGTCGATTGACGATTTTGTCAGTAGAATCAAGTCAGCCATTGAAAGCAGAACATCATTTTGA

Protein Analysis

427

Amino Acids

49.26

Weight (kDa)

5.95

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_SAD PF07973 195 - 247 2.7e-12 Threonyl and Alanyl tRNA synthetase second additional domain
tRNA-synt_2b PF00587 352 - 559 3.5e-49 tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon PF03129 571 - 659 2.1e-17 Anticodon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1235
AccB1I GGYRCC 2 cut(s) 96, 1154
AccBSI CCGCTC 1 cut(s) 925
AciI CCGC 3 cut(s) 266, 883, 925
AclWI GGATC 4 cut(s) 20, 276, 1185, 1202
AcsI RAATTY 4 cut(s) 596, 868, 1114, 1131
AcuI CTGAAG 1 cut(s) 589
AcyI GRCGYC 2 cut(s) 97, 400
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 924
AflII CTTAAG 1 cut(s) 770
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 6 cut(s) 67, 335, 595, 779, 1169, 1262
AjnI CCWGG 2 cut(s) 1193, 1210
AjuI GAANNNNNNNTTGG 2 cut(s) 771, 803
AluBI AGCT 6 cut(s) 474, 720, 905, 992, 1021, 1039
AluI AGCT 6 cut(s) 474, 720, 905, 992, 1021, 1039
Alw21I GWGCWC 1 cut(s) 809
Alw26I GTCTC 2 cut(s) 648, 984
AlwI GGATC 4 cut(s) 20, 276, 1185, 1202
AoxI GGCC 4 cut(s) 481, 635, 754, 884
ApoI RAATTY 4 cut(s) 596, 868, 1114, 1131
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 3 cut(s) 755, 915, 1215
AsuHPI GGTGA 3 cut(s) 83, 1085, 1214
AvaII GGWCC 2 cut(s) 915, 1215
BanI GGYRCC 2 cut(s) 96, 1154
BauI CACGAG 1 cut(s) 631
BbsI GAAGAC 2 cut(s) 543, 786
Bbv12I GWGCWC 1 cut(s) 809
BccI CCATC 2 cut(s) 319, 728
BciT130I CCWGG 2 cut(s) 1195, 1212
BclI TGATCA 1 cut(s) 1107
BcoDI GTCTC 2 cut(s) 648, 984
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 1 cut(s) 301
BfoI RGCGCY 1 cut(s) 100
BfrI CTTAAG 1 cut(s) 770
BglII AGATCT 1 cut(s) 571
BisI GCNGC 1 cut(s) 884
BlsI GCNGC 1 cut(s) 885
Bme1390I CCNGG 2 cut(s) 1195, 1212
Bme18I GGWCC 2 cut(s) 915, 1215
BmgT120I GGNCC 3 cut(s) 755, 915, 1215
BmiI GGNNCC 4 cut(s) 98, 916, 1156, 1216
BmrFI CCNGG 2 cut(s) 1195, 1212
BmsI GCATC 5 cut(s) 127, 172, 505, 685, 1113
BpiI GAAGAC 2 cut(s) 543, 786
BpmI CTGGAG 1 cut(s) 966
BsaHI GRCGYC 2 cut(s) 97, 400
BsaJI CCNNGG 6 cut(s) 100, 699, 918, 1084, 1158, 1211
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 924
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 2 cut(s) 983, 1004
BseBI CCWGG 2 cut(s) 1195, 1212
BseDI CCNNGG 6 cut(s) 100, 699, 918, 1084, 1158, 1211
BseGI GGATG 3 cut(s) 163, 334, 517
BseLI CCNNNNNNNGG 1 cut(s) 924
BseMII CTCAG 3 cut(s) 426, 521, 1031
BseNI ACTGG 2 cut(s) 983, 1004
BseRI GAGGAG 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 956
Bsh1285I CGRYCG 1 cut(s) 359
BshFI GGCC 4 cut(s) 483, 637, 756, 886
BshNI GGYRCC 2 cut(s) 96, 1154
BsiEI CGRYCG 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 809
BsiSI CCGG 2 cut(s) 94, 638
BslFI GGGAC 1 cut(s) 1228
BslI CCNNNNNNNGG 1 cut(s) 924
BsmAI GTCTC 2 cut(s) 648, 984
BsmBI CGTCTC 1 cut(s) 648
BsmFI GGGAC 1 cut(s) 1228
BsnI GGCC 4 cut(s) 483, 637, 756, 886
Bsp1286I GDGCHC 1 cut(s) 809
Bsp1407I TGTACA 1 cut(s) 315
Bsp19I CCATGG 1 cut(s) 1084
BspACI CCGC 3 cut(s) 266, 883, 925
BspANI GGCC 4 cut(s) 483, 637, 756, 886
BspCNI CTCAG 3 cut(s) 427, 520, 1030
BspHI TCATGA 1 cut(s) 891
BspLI GGNNCC 4 cut(s) 98, 916, 1156, 1216
BspPI GGATC 4 cut(s) 20, 276, 1185, 1202
BspT107I GGYRCC 2 cut(s) 96, 1154
BspTI CTTAAG 1 cut(s) 770
BsrBI CCGCTC 1 cut(s) 925
BsrFI RCCGGY 1 cut(s) 93
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 2 cut(s) 983, 1004
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 6 cut(s) 100, 699, 918, 1084, 1158, 1211
BssNI GRCGYC 2 cut(s) 97, 400
BssSI CACGAG 1 cut(s) 631
BssT1I CCWWGG 4 cut(s) 699, 918, 1084, 1158
Bst2BI CACGAG 1 cut(s) 631
Bst2UI CCWGG 2 cut(s) 1195, 1212
Bst4CI ACNGT 3 cut(s) 448, 1180, 1186
Bst6I CTCTTC 1 cut(s) 576
BstACI GRCGYC 2 cut(s) 97, 400
BstAFI CTTAAG 1 cut(s) 770
BstAPI GCANNNNNTGC 1 cut(s) 683
BstAUI TGTACA 1 cut(s) 315
BstC8I GCNNGC 2 cut(s) 51, 990
BstDEI CTNAG 5 cut(s) 435, 507, 568, 689, 1017
BstDSI CCRYGG 1 cut(s) 1084
BstF5I GGATG 3 cut(s) 163, 334, 517
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstMAI GTCTC 2 cut(s) 648, 984
BstMCI CGRYCG 1 cut(s) 359
BstMWI GCNNNNNNNGC 2 cut(s) 480, 683
BstNI CCWGG 2 cut(s) 1195, 1212
BstNSI RCATGY 2 cut(s) 191, 257
BstSCI CCNGG 2 cut(s) 1193, 1210
BstSFI CTRYAG 1 cut(s) 301
BstV2I GAAGAC 2 cut(s) 543, 786
BstX2I RGATCY 4 cut(s) 12, 268, 571, 1190
BstYI RGATCY 4 cut(s) 12, 268, 571, 1190
BsuRI GGCC 4 cut(s) 483, 637, 756, 886
BtgI CCRYGG 1 cut(s) 1084
BtsCI GGATG 3 cut(s) 163, 334, 517
BtsI GCAGTG 2 cut(s) 21, 809
BtsIMutI CAGTG 4 cut(s) 21, 809, 990, 1011
Cac8I GCNNGC 2 cut(s) 51, 990
CciI TCATGA 1 cut(s) 891
CfoI GCGC 1 cut(s) 99
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 3 cut(s) 755, 915, 1215
CseI GACGC 2 cut(s) 389, 791
Csp6I GTAC 1 cut(s) 316
CviAII CATG 8 cut(s) 27, 188, 254, 479, 892, 995, 1085, 1219
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 5 cut(s) 435, 507, 568, 689, 1017
DinI GGCGCC 1 cut(s) 98
DrdI GACNNNNNNGTC 1 cut(s) 1235
DseDI GACNNNNNNGTC 1 cut(s) 1235
Eam1104I CTCTTC 1 cut(s) 576
EarI CTCTTC 1 cut(s) 576
EciI GGCGGA 1 cut(s) 281
Eco130I CCWWGG 4 cut(s) 699, 918, 1084, 1158
Eco47I GGWCC 2 cut(s) 915, 1215
Eco57I CTGAAG 1 cut(s) 589
EcoO109I RGGNCCY 1 cut(s) 915
EcoRI GAATTC 1 cut(s) 1114
EcoRII CCWGG 2 cut(s) 1193, 1210
EcoT14I CCWWGG 4 cut(s) 699, 918, 1084, 1158
EgeI GGCGCC 1 cut(s) 98
EheI GGCGCC 1 cut(s) 98
ErhI CCWWGG 4 cut(s) 699, 918, 1084, 1158
Esp3I CGTCTC 1 cut(s) 648
FaeI CATG 8 cut(s) 30, 191, 257, 482, 895, 998, 1088, 1222
FalI AAGNNNNNCTT 4 cut(s) 327, 359, 771, 803
FaqI GGGAC 1 cut(s) 1228
FatI CATG 8 cut(s) 26, 187, 253, 478, 891, 994, 1084, 1218
FbaI TGATCA 1 cut(s) 1107
Fnu4HI GCNGC 1 cut(s) 884
FokI GGATG 3 cut(s) 150, 341, 524
Fsp4HI GCNGC 1 cut(s) 884
FspBI CTAG 1 cut(s) 533
GlaI GCGC 1 cut(s) 98
GluI GCNGC 1 cut(s) 884
GsaI CCCAGC 1 cut(s) 960
GsuI CTGGAG 1 cut(s) 966
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 4 cut(s) 483, 637, 756, 886
HapII CCGG 2 cut(s) 94, 638
HgaI GACGC 2 cut(s) 389, 791
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 2 cut(s) 97, 400
Hin1II CATG 8 cut(s) 30, 191, 257, 482, 895, 998, 1088, 1222
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 5 cut(s) 863, 895, 936, 1169, 1245
HpaII CCGG 2 cut(s) 94, 638
HphI GGTGA 3 cut(s) 83, 1085, 1214
Hpy166II GTNNAC 1 cut(s) 1076
Hpy188I TCNGA 3 cut(s) 324, 874, 1120
Hpy188III TCNNGA 8 cut(s) 113, 293, 382, 468, 509, 892, 1111, 1173
Hpy8I GTNNAC 1 cut(s) 1076
HpyAV CCTTC 2 cut(s) 68, 786
HpyCH4III ACNGT 3 cut(s) 448, 1180, 1186
HpyCH4V TGCA 6 cut(s) 7, 26, 49, 260, 988, 1032
HpyF10VI GCNNNNNNNGC 2 cut(s) 480, 683
HpyF3I CTNAG 5 cut(s) 435, 507, 568, 689, 1017
Hsp92I GRCGYC 2 cut(s) 97, 400
Hsp92II CATG 8 cut(s) 30, 191, 257, 482, 895, 998, 1088, 1222
HspAI GCGC 1 cut(s) 97
KasI GGCGCC 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 1107
LmnI GCTCC 2 cut(s) 717, 922
LweI GCATC 5 cut(s) 127, 172, 505, 685, 1113
MaeI CTAG 1 cut(s) 533
MaeIII GTNAC 4 cut(s) 401, 1006, 1180, 1202
MbiI CCGCTC 1 cut(s) 925
MboII GAAGA 6 cut(s) 50, 209, 347, 548, 593, 791
MfeI CAATTG 1 cut(s) 44
MflI RGATCY 4 cut(s) 12, 268, 571, 1190
MhlI GDGCHC 1 cut(s) 809
MluCI AATT 8 cut(s) 44, 461, 596, 726, 762, 868, 1114, 1131
Mly113I GGCGCC 1 cut(s) 97
MlyI GAGTC 2 cut(s) 857, 945
MmeI TCCRAC 2 cut(s) 631, 695
MseI TTAA 3 cut(s) 621, 771, 828
MspA1I CMGCKG 1 cut(s) 1021
MspCI CTTAAG 1 cut(s) 770
MspI CCGG 2 cut(s) 94, 638
MspR9I CCNGG 2 cut(s) 1195, 1212
MunI CAATTG 1 cut(s) 44
MvaI CCWGG 2 cut(s) 1195, 1212
MwoI GCNNNNNNNGC 2 cut(s) 480, 683
NarI GGCGCC 1 cut(s) 97
NcoI CCATGG 1 cut(s) 1084
NlaIII CATG 8 cut(s) 30, 191, 257, 482, 895, 998, 1088, 1222
NlaIV GGNNCC 4 cut(s) 98, 916, 1156, 1216
NmeAIII GCCGAG 1 cut(s) 110
NmuCI GTSAC 3 cut(s) 401, 1006, 1202
NspI RCATGY 2 cut(s) 191, 257
PagI TCATGA 1 cut(s) 891
PciI ACATGT 1 cut(s) 253
PfeI GAWTC 3 cut(s) 895, 1169, 1245
PflFI GACNNNGTC 1 cut(s) 1219
PkrI GCNGC 1 cut(s) 885
PleI GAGTC 2 cut(s) 857, 944
PluTI GGCGCC 1 cut(s) 100
PpsI GAGTC 2 cut(s) 857, 944
PpuMI RGGWCCY 1 cut(s) 915
PscI ACATGT 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 915
Psp6I CCWGG 2 cut(s) 1193, 1210
PspFI CCCAGC 1 cut(s) 956
PspGI CCWGG 2 cut(s) 1193, 1210
PspN4I GGNNCC 4 cut(s) 98, 916, 1156, 1216
PspPI GGNCC 3 cut(s) 755, 915, 1215
PspPPI RGGWCCY 1 cut(s) 915
PsuI RGATCY 4 cut(s) 12, 268, 571, 1190
PsyI GACNNNGTC 1 cut(s) 1219
PvuII CAGCTG 1 cut(s) 1021
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SaqAI TTAA 3 cut(s) 621, 771, 828
SatI GCNGC 1 cut(s) 884
Sau96I GGNCC 3 cut(s) 755, 915, 1215
SchI GAGTC 2 cut(s) 857, 945
ScrFI CCNGG 2 cut(s) 1195, 1212
SduI GDGCHC 1 cut(s) 809
SfaNI GCATC 5 cut(s) 127, 172, 505, 685, 1113
SfcI CTRYAG 1 cut(s) 301
SfoI GGCGCC 1 cut(s) 98
SgrAI CRCCGGYG 1 cut(s) 93
SinI GGWCC 2 cut(s) 915, 1215
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
Sse9I AATT 8 cut(s) 44, 461, 596, 726, 762, 868, 1114, 1131
SsiI CCGC 3 cut(s) 266, 883, 925
SspDI GGCGCC 1 cut(s) 96
SspMI CTAG 1 cut(s) 533
StyD4I CCNGG 2 cut(s) 1193, 1210
StyI CCWWGG 4 cut(s) 699, 918, 1084, 1158
TaaI ACNGT 3 cut(s) 448, 1180, 1186
TaqI TCGA 2 cut(s) 355, 1223
TaqII GACCGA 2 cut(s) 92, 373
TasI AATT 8 cut(s) 44, 461, 596, 726, 762, 868, 1114, 1131
TatI WGTACW 1 cut(s) 315
TauI GCSGC 1 cut(s) 886
TfiI GAWTC 3 cut(s) 895, 1169, 1245
Tru1I TTAA 3 cut(s) 621, 771, 828
Tru9I TTAA 3 cut(s) 621, 771, 828
TscAI CASTG 4 cut(s) 28, 809, 990, 1011
TseFI GTSAC 3 cut(s) 401, 1006, 1202
Tsp45I GTSAC 3 cut(s) 401, 1006, 1202
TspDTI ATGAA 8 cut(s) 50, 51, 354, 377, 474, 567, 630, 887
TspGWI ACGGA 2 cut(s) 479, 593
TspRI CASTG 4 cut(s) 28, 809, 990, 1011
Tth111I GACNNNGTC 1 cut(s) 1219
Vha464I CTTAAG 1 cut(s) 770
VpaK11BI GGWCC 2 cut(s) 915, 1215
XapI RAATTY 4 cut(s) 596, 868, 1114, 1131
XceI RCATGY 2 cut(s) 191, 257
XspI CTAG 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.