pycom09g04510

threonine-tRNA ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
3335363 .. 3337298
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g04510.3

Sequence Viewer

Length: 1062 bp
ATGTTAATTCTTCAGAGAATGGCAATGGCCACTTCTTCTTCCTTCCTCTCAATCCCTCTCCTGAAGACCCCTTCTTTCCTTTCCCCGATTAAACACTGCGTTTCGCCACTGAGCTCCGAGTTCAGGGCTCTGGCCCTCTACGGCGGCAGAAATGGAGTCTCCACCTCCTCGGCGGTGGCCACGGAGGCTCAGGTCTCGACCGAAGACGACAAATTGAAGGATGCCCAGATGGAGGTAACTGATAAGCCTGAGAAAGTCATGCTTCCAACCAACGAGTCCTCGGAGAGCCTGCTCAGAATTCGACACACGTGTGCACACGTGATGGCCATGGCTGTTCAAAAGCTCTTCCCGGATGCAAAAGTAACAATTGGTCCGTGGATAGAAAATGGGTTCTATTATGATTTTGATATGGAGCCTTTGACGGACAAAGAGTTGAAGAGGATCAAGAAGGAAATGGATCGCATCATTGGTAGGAATTTACCACTTATAAGAGAGGAAGTTTCAAGAGATGAAGCTCACAGAAGAATAACTGCTCTCAATGAACCATACAAATTGGAAATTTTGGATAGTATTAAGGAAGATCCCATTACCATATATCACATTGGCGATGAATGGTGGGACCTGTGTGCGGGGCCTCATGTTGAAAAAACTGGAAAAATTAACAGAAAAGCTGTCGATCTTGAGTCTATTGCTGGTGCTTACTGGAGAGGAGATGAAAAGAAACCCATGCTGCAGAGGATTTATGGCACTGCATGGGAGAGCGAAGAACAATTGAAGGCATATCTTCATTTCAAAGCTGAAGCTAAACGTCGAGATCACAGGCGCCTTGGTCAAGTTCTTGATCTTTTTTCTTTACAGAATGATGCTGGTGGGGGTTTAGTGTTCTGGCATCCAAAGGGTGCTATTGTGAGGCATGTAATAGAAGATTTGTGGAAAAAGATCCACATAGAACGTGGTTATGATTTGCTGTATACTCCACATGTTGCAAAGGCAAACCTTTGGCAGATAAGTGGTCATCTGGATTATTACAGAGAGAATATGTATGATCTAGATGAATGTTGA

Protein Analysis

354

Amino Acids

40.55

Weight (kDa)

6.25

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
AccB1I GGYRCC 1 cut(s) 822
AccI GTMKAC 1 cut(s) 971
AciI CCGC 3 cut(s) 144, 173, 629
AclWI GGATC 4 cut(s) 449, 465, 575, 934
AcoI YGGCCR 3 cut(s) 27, 177, 324
AcsI RAATTY 3 cut(s) 297, 475, 558
AcuI CTGAAG 2 cut(s) 83, 819
AcvI CACGTG 2 cut(s) 309, 319
AcyI GRCGYC 1 cut(s) 823
AfiI CCNNNNNNNGG 3 cut(s) 123, 232, 628
AflIII ACRYGT 4 cut(s) 306, 308, 316, 979
AgsI TTSAA 7 cut(s) 217, 338, 436, 504, 644, 775, 793
AleI CACNNNNGTG 1 cut(s) 309
AluBI AGCT 6 cut(s) 114, 343, 515, 671, 797, 803
AluI AGCT 6 cut(s) 114, 343, 515, 671, 797, 803
Alw21I GWGCWC 2 cut(s) 116, 316
Alw26I GTCTC 2 cut(s) 163, 199
Alw44I GTGCAC 1 cut(s) 312
AlwI GGATC 4 cut(s) 449, 465, 575, 934
AoxI GGCC 5 cut(s) 27, 132, 177, 324, 632
ApaLI GTGCAC 1 cut(s) 312
ApeKI GCWGC 1 cut(s) 730
ApoI RAATTY 3 cut(s) 297, 475, 558
AspLEI GCGC 1 cut(s) 825
AspS9I GGNCC 4 cut(s) 133, 371, 619, 632
AsuC2I CCSGG 1 cut(s) 350
AvaII GGWCC 2 cut(s) 371, 619
BaeGI GKGCMC 1 cut(s) 316
BalI TGGCCA 3 cut(s) 29, 179, 326
BanI GGYRCC 1 cut(s) 822
BanII GRGCYC 2 cut(s) 116, 130
BbrPI CACGTG 2 cut(s) 309, 319
BbsI GAAGAC 2 cut(s) 71, 210
Bbv12I GWGCWC 2 cut(s) 116, 316
BbvI GCAGC 1 cut(s) 717
BccI CCATC 2 cut(s) 223, 316
BceAI ACGGC 1 cut(s) 157
BcnI CCSGG 1 cut(s) 350
BcoDI GTCTC 2 cut(s) 163, 199
BfaI CTAG 1 cut(s) 1049
BfmI CTRYAG 1 cut(s) 731
BfoI RGCGCY 1 cut(s) 826
BglI GCCNNNNNGGC 1 cut(s) 185
BisI GCNGC 2 cut(s) 145, 731
BlsI GCNGC 2 cut(s) 146, 732
Bme1390I CCNGG 1 cut(s) 350
Bme18I GGWCC 2 cut(s) 371, 619
BmgT120I GGNCC 4 cut(s) 133, 371, 619, 632
BmiI GGNNCC 4 cut(s) 414, 620, 633, 824
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 5 cut(s) 211, 343, 471, 853, 898
BpiI GAAGAC 2 cut(s) 71, 210
BpmI CTGGAG 1 cut(s) 724
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 701
BpuMI CCSGG 1 cut(s) 350
BsaAI YACGTR 2 cut(s) 309, 319
BsaHI GRCGYC 1 cut(s) 823
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 6 cut(s) 168, 180, 279, 327, 374, 826
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 232, 628
Bse1I ACTGG 2 cut(s) 655, 707
Bse3DI GCAATG 1 cut(s) 30
BseDI CCNNGG 6 cut(s) 168, 180, 279, 327, 374, 826
BseGI GGATG 3 cut(s) 226, 358, 889
BseLI CCNNNNNNNGG 3 cut(s) 123, 232, 628
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 4 cut(s) 101, 203, 240, 307
BseNI ACTGG 2 cut(s) 655, 707
BseRI GAGGAG 2 cut(s) 157, 723
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 1 cut(s) 717
Bsh1285I CGRYCG 1 cut(s) 201
BshFI GGCC 5 cut(s) 29, 134, 179, 326, 634
BshNI GGYRCC 1 cut(s) 822
BsiEI CGRYCG 1 cut(s) 201
BsiHKAI GWGCWC 2 cut(s) 116, 316
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 3 cut(s) 123, 232, 628
BsmAI GTCTC 2 cut(s) 163, 199
BsmFI GGGAC 1 cut(s) 632
BsnI GGCC 5 cut(s) 29, 134, 179, 326, 634
Bso31I GGTCTC 1 cut(s) 199
Bsp1286I GDGCHC 3 cut(s) 116, 130, 316
Bsp143I GATC 8 cut(s) 441, 457, 580, 676, 814, 841, 939, 1045
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 3 cut(s) 144, 173, 629
BspANI GGCC 5 cut(s) 29, 134, 179, 326, 634
BspCNI CTCAG 4 cut(s) 102, 202, 241, 306
BspLI GGNNCC 4 cut(s) 414, 620, 633, 824
BspMAI CTGCAG 1 cut(s) 735
BspPI GGATC 4 cut(s) 449, 465, 575, 934
BspQI GCTCTTC 1 cut(s) 350
BspT107I GGYRCC 1 cut(s) 822
BspTNI GGTCTC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 2 cut(s) 655, 707
BssECI CCNNGG 6 cut(s) 168, 180, 279, 327, 374, 826
BssMI GATC 8 cut(s) 441, 457, 580, 676, 814, 841, 939, 1045
BssNAI GTATAC 1 cut(s) 972
BssNI GRCGYC 1 cut(s) 823
BssT1I CCWWGG 2 cut(s) 327, 826
Bst1107I GTATAC 1 cut(s) 972
Bst6I CTCTTC 2 cut(s) 350, 431
BstACI GRCGYC 1 cut(s) 823
BstBAI YACGTR 2 cut(s) 309, 319
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 4 cut(s) 110, 189, 249, 293
BstDSI CCRYGG 3 cut(s) 180, 327, 374
BstF5I GGATG 3 cut(s) 226, 358, 889
BstH2I RGCGCY 1 cut(s) 826
BstHHI GCGC 1 cut(s) 825
BstKTI GATC 8 cut(s) 444, 460, 583, 679, 817, 844, 942, 1048
BstMAI GTCTC 2 cut(s) 163, 199
BstMBI GATC 8 cut(s) 441, 457, 580, 676, 814, 841, 939, 1045
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNSI RCATGY 2 cut(s) 917, 983
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 731
BstSLI GKGCMC 1 cut(s) 316
BstV1I GCAGC 1 cut(s) 717
BstV2I GAAGAC 2 cut(s) 71, 210
BstX2I RGATCY 2 cut(s) 580, 939
BstYI RGATCY 2 cut(s) 580, 939
BstZ17I GTATAC 1 cut(s) 972
BsuRI GGCC 5 cut(s) 29, 134, 179, 326, 634
BtgI CCRYGG 3 cut(s) 180, 327, 374
BtgZI GCGATG 1 cut(s) 621
BtsCI GGATG 3 cut(s) 226, 358, 889
BtsI GCAGTG 2 cut(s) 94, 747
BtsIMutI CAGTG 3 cut(s) 94, 107, 747
Cac8I GCNNGC 1 cut(s) 290
CfoI GCGC 1 cut(s) 825
Cfr13I GGNCC 4 cut(s) 133, 371, 619, 632
CviAII CATG 7 cut(s) 259, 328, 638, 727, 753, 914, 980
DdeI CTNAG 4 cut(s) 110, 189, 249, 293
DinI GGCGCC 1 cut(s) 824
DpnI GATC 8 cut(s) 443, 459, 582, 678, 816, 843, 941, 1047
DpnII GATC 8 cut(s) 441, 457, 580, 676, 814, 841, 939, 1045
EaeI YGGCCR 3 cut(s) 27, 177, 324
Eam1104I CTCTTC 2 cut(s) 350, 431
EarI CTCTTC 2 cut(s) 350, 431
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 327, 826
Eco24I GRGCYC 2 cut(s) 116, 130
Eco31I GGTCTC 1 cut(s) 199
Eco47I GGWCC 2 cut(s) 371, 619
Eco53kI GAGCTC 1 cut(s) 114
Eco57I CTGAAG 2 cut(s) 83, 819
Eco72I CACGTG 2 cut(s) 309, 319
EcoICRI GAGCTC 1 cut(s) 114
EcoO109I RGGNCCY 2 cut(s) 619, 632
EcoRI GAATTC 1 cut(s) 297
EcoT14I CCWWGG 2 cut(s) 327, 826
EcoT38I GRGCYC 2 cut(s) 116, 130
EgeI GGCGCC 1 cut(s) 824
EheI GGCGCC 1 cut(s) 824
ErhI CCWWGG 2 cut(s) 327, 826
FaeI CATG 7 cut(s) 262, 331, 641, 730, 756, 917, 983
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 632
FatI CATG 7 cut(s) 258, 327, 637, 726, 752, 913, 979
FauI CCCGC 1 cut(s) 622
FblI GTMKAC 1 cut(s) 971
Fnu4HI GCNGC 2 cut(s) 145, 731
FokI GGATG 3 cut(s) 233, 365, 876
FriOI GRGCYC 2 cut(s) 116, 130
Fsp4HI GCNGC 2 cut(s) 145, 731
FspBI CTAG 1 cut(s) 1049
GlaI GCGC 1 cut(s) 824
GluI GCNGC 2 cut(s) 145, 731
GsuI CTGGAG 1 cut(s) 724
HaeII RGCGCY 1 cut(s) 826
HaeIII GGCC 5 cut(s) 29, 134, 179, 326, 634
HapII CCGG 1 cut(s) 350
HhaI GCGC 1 cut(s) 825
Hin1I GRCGYC 1 cut(s) 823
Hin1II CATG 7 cut(s) 262, 331, 641, 730, 756, 917, 983
Hin6I GCGC 1 cut(s) 823
HinP1I GCGC 1 cut(s) 823
HinfI GANTC 3 cut(s) 156, 275, 683
HpaII CCGG 1 cut(s) 350
Hpy166II GTNNAC 2 cut(s) 314, 972
Hpy188I TCNGA 4 cut(s) 15, 118, 283, 296
Hpy188III TCNNGA 9 cut(s) 61, 196, 445, 504, 680, 812, 839, 1019, 1049
Hpy8I GTNNAC 2 cut(s) 314, 972
Hpy99I CGWCG 1 cut(s) 813
HpyAV CCTTC 5 cut(s) 52, 81, 211, 442, 769
HpyCH4IV ACGT 4 cut(s) 308, 318, 808, 952
HpyCH4V TGCA 5 cut(s) 314, 356, 733, 752, 986
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 4 cut(s) 110, 189, 249, 293
HpySE526I ACGT 4 cut(s) 308, 318, 808, 952
Hsp92I GRCGYC 1 cut(s) 823
Hsp92II CATG 7 cut(s) 262, 331, 641, 730, 756, 917, 983
HspAI GCGC 1 cut(s) 823
KasI GGCGCC 1 cut(s) 822
Kzo9I GATC 8 cut(s) 441, 457, 580, 676, 814, 841, 939, 1045
LguI GCTCTTC 1 cut(s) 350
LmnI GCTCC 2 cut(s) 119, 412
Lsp1109I GCAGC 1 cut(s) 717
LweI GCATC 5 cut(s) 211, 343, 471, 853, 898
MaeI CTAG 1 cut(s) 1049
MaeII ACGT 4 cut(s) 308, 318, 808, 952
MaeIII GTNAC 2 cut(s) 235, 361
MalI GATC 8 cut(s) 443, 459, 582, 678, 816, 843, 941, 1047
MboI GATC 8 cut(s) 441, 457, 580, 676, 814, 841, 939, 1045
MfeI CAATTG 2 cut(s) 366, 770
MflI RGATCY 2 cut(s) 580, 939
MhlI GDGCHC 3 cut(s) 116, 130, 316
MlsI TGGCCA 3 cut(s) 29, 179, 326
MluCI AATT 9 cut(s) 6, 212, 297, 366, 475, 551, 558, 657, 770
MluNI TGGCCA 3 cut(s) 29, 179, 326
Mly113I GGCGCC 1 cut(s) 823
MlyI GAGTC 3 cut(s) 165, 284, 692
MmeI TCCRAC 1 cut(s) 290
Mox20I TGGCCA 3 cut(s) 29, 179, 326
MscI TGGCCA 3 cut(s) 29, 179, 326
MseI TTAA 4 cut(s) 5, 90, 573, 660
MslI CAYNNNNRTG 1 cut(s) 309
Msp20I TGGCCA 3 cut(s) 29, 179, 326
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 350
MunI CAATTG 2 cut(s) 366, 770
MwoI GCNNNNNNNGC 1 cut(s) 185
NarI GGCGCC 1 cut(s) 823
NciI CCSGG 1 cut(s) 350
NcoI CCATGG 1 cut(s) 327
NdeII GATC 8 cut(s) 441, 457, 580, 676, 814, 841, 939, 1045
NlaIII CATG 7 cut(s) 262, 331, 641, 730, 756, 917, 983
NlaIV GGNNCC 4 cut(s) 414, 620, 633, 824
NmeAIII GCCGAG 1 cut(s) 149
NspI RCATGY 2 cut(s) 917, 983
OliI CACNNNNGTG 1 cut(s) 309
PciI ACATGT 1 cut(s) 979
PciSI GCTCTTC 1 cut(s) 350
PfoI TCCNGGA 1 cut(s) 348
PkrI GCNGC 2 cut(s) 146, 732
PleI GAGTC 3 cut(s) 164, 283, 691
PluTI GGCGCC 1 cut(s) 826
PmaCI CACGTG 2 cut(s) 309, 319
PmlI CACGTG 2 cut(s) 309, 319
PpsI GAGTC 3 cut(s) 164, 283, 691
Ppu21I YACGTR 2 cut(s) 309, 319
PpuMI RGGWCCY 1 cut(s) 619
PscI ACATGT 1 cut(s) 979
PsiI TTATAA 1 cut(s) 488
Psp124BI GAGCTC 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 619
PspCI CACGTG 2 cut(s) 309, 319
PspN4I GGNNCC 4 cut(s) 414, 620, 633, 824
PspPI GGNCC 4 cut(s) 133, 371, 619, 632
PspPPI RGGWCCY 1 cut(s) 619
PstI CTGCAG 1 cut(s) 735
PsuI RGATCY 2 cut(s) 580, 939
RseI CAYNNNNRTG 1 cut(s) 309
SacI GAGCTC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 350
SaqAI TTAA 4 cut(s) 5, 90, 573, 660
SatI GCNGC 2 cut(s) 145, 731
Sau3AI GATC 8 cut(s) 441, 457, 580, 676, 814, 841, 939, 1045
Sau96I GGNCC 4 cut(s) 133, 371, 619, 632
SchI GAGTC 3 cut(s) 165, 284, 692
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 3 cut(s) 116, 130, 316
SfaNI GCATC 5 cut(s) 211, 343, 471, 853, 898
SfcI CTRYAG 1 cut(s) 731
SfoI GGCGCC 1 cut(s) 824
SinI GGWCC 2 cut(s) 371, 619
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
Sse9I AATT 9 cut(s) 6, 212, 297, 366, 475, 551, 558, 657, 770
SsiI CCGC 3 cut(s) 144, 173, 629
SspDI GGCGCC 1 cut(s) 822
SspMI CTAG 1 cut(s) 1049
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 2 cut(s) 327, 826
TaiI ACGT 4 cut(s) 311, 321, 811, 955
TaqI TCGA 4 cut(s) 197, 301, 675, 811
TaqII GACCGA 1 cut(s) 215
TasI AATT 9 cut(s) 6, 212, 297, 366, 475, 551, 558, 657, 770
TauI GCSGC 1 cut(s) 147
Tru1I TTAA 4 cut(s) 5, 90, 573, 660
Tru9I TTAA 4 cut(s) 5, 90, 573, 660
TscAI CASTG 3 cut(s) 101, 114, 754
TseI GCWGC 1 cut(s) 730
TspDTI ATGAA 5 cut(s) 525, 555, 624, 729, 776
TspGWI ACGGA 3 cut(s) 197, 363, 437
TspRI CASTG 3 cut(s) 101, 114, 754
VneI GTGCAC 1 cut(s) 312
VpaK11BI GGWCC 2 cut(s) 371, 619
XapI RAATTY 3 cut(s) 297, 475, 558
XbaI TCTAGA 1 cut(s) 1048
XceI RCATGY 2 cut(s) 917, 983
XcmI CCANNNNNNNNNTGG 1 cut(s) 950
XmiI GTMKAC 1 cut(s) 971
XspI CTAG 1 cut(s) 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.