Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004311

Physical Location & Seq

Genomic Coordinates Forward (+)

25816355 .. 25817493

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCCACGGAGGCTCAGATCTCGACCCAAGACGACAAATTGAAGGATGCCCAGATGGAGGTAGCTGATAAGCCTGAGAAAGTCGTGCTTCCAACCAACGAGTCCTCCGAAAGCCTCATCACAATTCGACACACGTGTGCACACGTGATGGCCATGGCTGTTCAAAAGCTCTTCCCGGATGCAAAAGTGACAATTGGTCCGTGGATAGAAAATGGGTACTATTATGATTTTGATATGGAGCCTTTGACGGACAAAGAGTTGAAGAGAATCAAGAAAGAGAAGGATCGCATCATTGGAAGAAACTTACCACTCATAAGAGAAGAAGTTTCAAGAGATGAAGCTCACAAAAGAATAACCGCTCTCAACGAACCATACAAATTGGAAATTTTGGATAGTATTAAAGAAGATCCCGTTACCATATATCATATTGGAACTGTGCATAAAGGAATAAAAAAGAGATGGCGGGGCTGTGCTCAGGGAAAACAATGTTGTTGGTGCTCTTTAAAAATGAGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon tRNA-synt_2b tRNA_SAD

Protein Analysis

173

Amino Acids

19.84

Weight (kDa)

7.63

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04842 AT2G04842
fragaria_vesca	FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340
malus_domestica	MD05G1333800.v1.1 MD09G1120400.v1.1 MD17G1111100.v1.1
prunus_persica	Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1
pyrus_communis	pycom05g23910 pycom05g24220 pycom05g30420 pycom09g04510 pycom15g36000 pycom17g10340
rosa_chinensis	RchiOBHm_Chr2g0156891
rosa_laevigata	RLG00000020950
rosa_multiflora	Rmu_ssc0000408.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092610
rosa_rugosa	Rorug02G0456900
rosa_samantha	Rh2AG522600 Rh2BG535900 Rh2CG507500 Rh2DG544900
rosa_wichuraiana	Rw2G043160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	359
AciI	CCGC	2 cut(s)	357, 463
AclWI	GGATC	2 cut(s)	291, 401
AcoI	YGGCCR	2 cut(s)	3, 150
AcsI	RAATTY	1 cut(s)	384
AcvI	CACGTG	2 cut(s)	135, 145
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflIII	ACRYGT	3 cut(s)	132, 134, 142
AgsI	TTSAA	4 cut(s)	43, 164, 262, 330
AhdI	GACNNNNNGTC	1 cut(s)	195
AleI	CACNNNNGTG	1 cut(s)	135
AluBI	AGCT	3 cut(s)	65, 169, 341
AluI	AGCT	3 cut(s)	65, 169, 341
Alw21I	GWGCWC	3 cut(s)	142, 475, 500
Alw44I	GTGCAC	1 cut(s)	138
AlwI	GGATC	2 cut(s)	291, 401
AoxI	GGCC	2 cut(s)	3, 150
ApaLI	GTGCAC	1 cut(s)	138
ApoI	RAATTY	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	142
BalI	TGGCCA	2 cut(s)	5, 152
BbrPI	CACGTG	2 cut(s)	135, 145
Bbv12I	GWGCWC	3 cut(s)	142, 475, 500
BccI	CCATC	3 cut(s)	49, 142, 453
BcnI	CCSGG	1 cut(s)	176
BglI	GCCNNNNNGGC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	197
BmeRI	GACNNNNNGTC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	3 cut(s)	37, 169, 297
Bpu10I	CCTNAGC	1 cut(s)	474
BpuMI	CCSGG	1 cut(s)	176
BsaAI	YACGTR	2 cut(s)	135, 145
BsaJI	CCNNGG	3 cut(s)	6, 153, 200
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
BseDI	CCNNGG	3 cut(s)	6, 153, 200
BseGI	GGATG	2 cut(s)	52, 184
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	3 cut(s)	29, 66, 488
BseSI	GKGCMC	1 cut(s)	142
BshFI	GGCC	2 cut(s)	5, 152
BsiHKAI	GWGCWC	3 cut(s)	142, 475, 500
BsiSI	CCGG	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	58
BsnI	GGCC	2 cut(s)	5, 152
Bsp1286I	GDGCHC	3 cut(s)	142, 475, 500
Bsp143I	GATC	3 cut(s)	18, 283, 406
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	357, 463
BspANI	GGCC	2 cut(s)	5, 152
BspCNI	CTCAG	3 cut(s)	28, 67, 487
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	2 cut(s)	291, 401
BspQI	GCTCTTC	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	359
BssECI	CCNNGG	3 cut(s)	6, 153, 200
BssMI	GATC	3 cut(s)	18, 283, 406
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	2 cut(s)	176, 257
BstBAI	YACGTR	2 cut(s)	135, 145
BstDEI	CTNAG	3 cut(s)	15, 75, 474
BstDSI	CCRYGG	3 cut(s)	6, 153, 200
BstF5I	GGATG	2 cut(s)	52, 184
BstKTI	GATC	3 cut(s)	21, 286, 409
BstMBI	GATC	3 cut(s)	18, 283, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	142
BstX2I	RGATCY	2 cut(s)	18, 406
BstYI	RGATCY	2 cut(s)	18, 406
BsuRI	GGCC	2 cut(s)	5, 152
BtgI	CCRYGG	3 cut(s)	6, 153, 200
BtsCI	GGATG	2 cut(s)	52, 184
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	1 cut(s)	154
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	3 cut(s)	15, 75, 474
DpnI	GATC	3 cut(s)	20, 285, 408
DpnII	GATC	3 cut(s)	18, 283, 406
DraI	TTTAAA	1 cut(s)	504
DriI	GACNNNNNGTC	1 cut(s)	195
EaeI	YGGCCR	2 cut(s)	3, 150
Eam1104I	CTCTTC	2 cut(s)	176, 257
Eam1105I	GACNNNNNGTC	1 cut(s)	195
EarI	CTCTTC	2 cut(s)	176, 257
Eco130I	CCWWGG	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	197
Eco72I	CACGTG	2 cut(s)	135, 145
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	1 cut(s)	157
FaiI	YATR	9 cut(s)	155, 225, 236, 314, 373, 419, 421, 426, 441
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FatI	CATG	1 cut(s)	153
FauI	CCCGC	1 cut(s)	456
FokI	GGATG	2 cut(s)	59, 191
HaeIII	GGCC	2 cut(s)	5, 152
HapII	CCGG	1 cut(s)	176
Hin1II	CATG	1 cut(s)	157
HinfI	GANTC	2 cut(s)	101, 267
HpaII	CCGG	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	2 cut(s)	18, 109
Hpy188III	TCNNGA	3 cut(s)	22, 271, 330
Hpy8I	GTNNAC	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	37, 274
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	2 cut(s)	134, 144
HpyCH4V	TGCA	3 cut(s)	140, 182, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	15, 75, 474
HpySE526I	ACGT	2 cut(s)	134, 144
Hsp92II	CATG	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	18, 283, 406
LguI	GCTCTTC	1 cut(s)	176
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	4 cut(s)	65, 87, 189, 461
LweI	GCATC	3 cut(s)	37, 169, 297
MaeII	ACGT	2 cut(s)	134, 144
MaeIII	GTNAC	2 cut(s)	187, 412
MalI	GATC	3 cut(s)	20, 285, 408
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	3 cut(s)	18, 283, 406
MboII	GAAGA	5 cut(s)	163, 274, 309, 332, 416
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	2 cut(s)	18, 406
MhlI	GDGCHC	3 cut(s)	142, 475, 500
MlsI	TGGCCA	2 cut(s)	5, 152
MluCI	AATT	5 cut(s)	38, 123, 192, 377, 384
MluNI	TGGCCA	2 cut(s)	5, 152
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	4 cut(s)	4, 52, 115, 125
Mox20I	TGGCCA	2 cut(s)	5, 152
MscI	TGGCCA	2 cut(s)	5, 152
MseI	TTAA	2 cut(s)	399, 503
MslI	CAYNNNNRTG	1 cut(s)	135
Msp20I	TGGCCA	2 cut(s)	5, 152
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	3 cut(s)	18, 283, 406
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	135
PciSI	GCTCTTC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	267
PfoI	TCCNGGA	1 cut(s)	174
PleI	GAGTC	1 cut(s)	109
PmaCI	CACGTG	2 cut(s)	135, 145
PmlI	CACGTG	2 cut(s)	135, 145
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	2 cut(s)	135, 145
PspCI	CACGTG	2 cut(s)	135, 145
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	18, 406
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	399, 503
Sau3AI	GATC	3 cut(s)	18, 283, 406
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	3 cut(s)	142, 475, 500
SetI	ASST	6 cut(s)	63, 67, 137, 147, 171, 343
SfaNI	GCATC	3 cut(s)	37, 169, 297
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	135
Sse9I	AATT	5 cut(s)	38, 123, 192, 377, 384
SsiI	CCGC	2 cut(s)	357, 463
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	2 cut(s)	137, 147
TaqI	TCGA	2 cut(s)	23, 127
TasI	AATT	5 cut(s)	38, 123, 192, 377, 384
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	2 cut(s)	399, 503
Tru9I	TTAA	2 cut(s)	399, 503
TseFI	GTSAC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	351
TspGWI	ACGGA	3 cut(s)	23, 189, 263
VneI	GTGCAC	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.