Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004311

Physical Location & Seq

Genomic Coordinates Forward (+)

25577348 .. 25578173

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g23910.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAGCCTTTGACGGACAAAGAGTTGAAGAGAATCAAGAAAGAGAAGGATCGCATCATTGGAAGAAACTTACCACTCATAAGAGAAGAAGTTTCAAGAGATGAAGCTCACAAAAGAATAACCGCTCTCAACGAACCATACAAATTGGAAATTTTGGATAGTATTAAAGAAGATCCCGTTACCATATATCATATTGGAACTGTGATGAATGGTGGGACCTATGTGCATGGCCCCATGTTGAAAAAAACTGGAAATATTAACAGAAACGTTGTCGAACTTGAGTCTATTGCTGGTGCCTACTGGAGAGGAGATGAAAAGAAACCAATGCTGCAGAGGATCTATGGCACTGCATGGGAGAGTGAGGATCAATTGAAGGCATTTCAAAGAGGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon tRNA-synt_2b tRNA_SAD

Protein Analysis

132

Amino Acids

15.12

Weight (kDa)

8.78

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04842 AT2G04842
fragaria_vesca	FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340
malus_domestica	MD05G1333800.v1.1 MD09G1120400.v1.1 MD17G1111100.v1.1
prunus_persica	Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1
pyrus_communis	pycom05g23910 pycom05g24220 pycom05g30420 pycom09g04510 pycom15g36000 pycom17g10340
rosa_chinensis	RchiOBHm_Chr2g0156891
rosa_laevigata	RLG00000020950
rosa_multiflora	Rmu_ssc0000408.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092610
rosa_rugosa	Rorug02G0456900
rosa_samantha	Rh2AG522600 Rh2BG535900 Rh2CG507500 Rh2DG544900
rosa_wichuraiana	Rw2G043160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	293
AccBSI	CCGCTC	1 cut(s)	125
AciI	CCGC	1 cut(s)	123
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	4 cut(s)	57, 167, 344, 372
AcsI	RAATTY	1 cut(s)	150
AgsI	TTSAA	5 cut(s)	28, 96, 241, 373, 383
AluBI	AGCT	2 cut(s)	107, 393
AluI	AGCT	2 cut(s)	107, 393
AlwI	GGATC	4 cut(s)	57, 167, 344, 372
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	1 cut(s)	150
AspS9I	GGNCC	2 cut(s)	216, 230
AvaII	GGWCC	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	329
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	216
BmgT120I	GGNCC	2 cut(s)	216, 230
BmiI	GGNNCC	4 cut(s)	6, 217, 232, 295
BmsI	GCATC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	253, 305
BseNI	ACTGG	2 cut(s)	253, 305
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	315
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	49, 172, 336, 364
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	231
BspLI	GGNNCC	4 cut(s)	6, 217, 232, 295
BspMAI	CTGCAG	1 cut(s)	333
BspPI	GGATC	4 cut(s)	57, 167, 344, 372
BspT107I	GGYRCC	1 cut(s)	293
BsrBI	CCGCTC	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	253, 305
BssMI	GATC	4 cut(s)	49, 172, 336, 364
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	23
BstKTI	GATC	4 cut(s)	52, 175, 339, 367
BstMBI	GATC	4 cut(s)	49, 172, 336, 364
BstSFI	CTRYAG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	315
BstX2I	RGATCY	2 cut(s)	172, 336
BstYI	RGATCY	2 cut(s)	172, 336
BsuRI	GGCC	1 cut(s)	231
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	216, 230
CviAII	CATG	3 cut(s)	227, 235, 351
CviJI	RGCY	4 cut(s)	7, 107, 231, 393
CviKI_1	RGCY	4 cut(s)	7, 107, 231, 393
DpnI	GATC	4 cut(s)	51, 174, 338, 366
DpnII	GATC	4 cut(s)	49, 172, 336, 364
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	216
FaeI	CATG	3 cut(s)	230, 238, 354
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	3 cut(s)	226, 234, 350
Fnu4HI	GCNGC	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	329
GluI	GCNGC	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	230, 238, 354
HinfI	GANTC	2 cut(s)	33, 281
Hpy188III	TCNNGA	2 cut(s)	37, 96
HpyAV	CCTTC	2 cut(s)	40, 367
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	3 cut(s)	226, 331, 350
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	3 cut(s)	230, 238, 354
Kzo9I	GATC	4 cut(s)	49, 172, 336, 364
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	234, 276, 286
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	1 cut(s)	63
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	4 cut(s)	51, 174, 338, 366
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	4 cut(s)	49, 172, 336, 364
MboII	GAAGA	4 cut(s)	40, 75, 98, 182
MfeI	CAATTG	1 cut(s)	368
MflI	RGATCY	2 cut(s)	172, 336
MluCI	AATT	3 cut(s)	143, 150, 368
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	4 cut(s)	299, 327, 355, 380
MseI	TTAA	2 cut(s)	165, 258
MunI	CAATTG	1 cut(s)	368
NdeII	GATC	4 cut(s)	49, 172, 336, 364
NlaIII	CATG	3 cut(s)	230, 238, 354
NlaIV	GGNNCC	4 cut(s)	6, 217, 232, 295
PfeI	GAWTC	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	330
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PpuMI	RGGWCCY	1 cut(s)	216
Psp1406I	AACGTT	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	216
PspN4I	GGNNCC	4 cut(s)	6, 217, 232, 295
PspPI	GGNCC	2 cut(s)	216, 230
PspPPI	RGGWCCY	1 cut(s)	216
PstI	CTGCAG	1 cut(s)	333
PsuI	RGATCY	2 cut(s)	172, 336
SaqAI	TTAA	2 cut(s)	165, 258
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	4 cut(s)	49, 172, 336, 364
Sau96I	GGNCC	2 cut(s)	216, 230
SchI	GAGTC	1 cut(s)	290
SetI	ASST	4 cut(s)	109, 221, 270, 395
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	329
SinI	GGWCC	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	3 cut(s)	143, 150, 368
SsiI	CCGC	1 cut(s)	123
SspI	AATATT	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	273
TasI	AATT	3 cut(s)	143, 150, 368
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	2 cut(s)	165, 258
Tru9I	TTAA	2 cut(s)	165, 258
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	1 cut(s)	328
TspDTI	ATGAA	3 cut(s)	117, 221, 327
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	216
XapI	RAATTY	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.