Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004311

Physical Location & Seq

Genomic Coordinates Forward (+)

45699183 .. 45701202

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1333800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGATGTAGCTGATATAACTGAGAAAGTCGTGCTTCCAACCAACGAGTCCTCCGAAAGCCGCATCAGAATTCGACACACGTGTGCACACGTGATGGCCATGGCTGTTCAAAAGCTCTTCCTGGATGCAAAAGTGACAATTGGTCCATGGATAGAAAATGGGTTCTATTATGATTTTGATATGGAGCCTTTGATGGACAAAGAGTTGAAGAGAATCAAGAAGGAGATGGATCGCATCATTGGTAGAAACTTACCACTCATAAGAGAAGAAGTTTCAAGGGATGAAGCTCACAAAAGAATAACCGCTCTCAACGAACCACACAAATTGGAAATTTTGAATAGTATTAAAGAAGATCCCATTACCATATATCATATTGGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon tRNA-synt_2b tRNA_SAD

Protein Analysis

128

Amino Acids

14.8

Weight (kDa)

5.74

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04842 AT2G04842
fragaria_vesca	FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340 FvH4_6g41340
malus_domestica	MD05G1333800.v1.1 MD09G1120400.v1.1 MD17G1111100.v1.1
prunus_persica	Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1 Prupe.3G203100_v2.0.a1
pyrus_communis	pycom05g23910 pycom05g24220 pycom05g30420 pycom09g04510 pycom15g36000 pycom17g10340
rosa_chinensis	RchiOBHm_Chr2g0156891
rosa_laevigata	RLG00000020950
rosa_multiflora	Rmu_ssc0000408.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092610
rosa_rugosa	Rorug02G0456900
rosa_samantha	Rh2AG522600 Rh2BG535900 Rh2CG507500 Rh2DG544900
rosa_wichuraiana	Rw2G043160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	305
AciI	CCGC	2 cut(s)	61, 303
AclWI	GGATC	2 cut(s)	237, 347
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	69, 330
AcvI	CACGTG	2 cut(s)	81, 91
AflIII	ACRYGT	3 cut(s)	78, 80, 88
AgsI	TTSAA	4 cut(s)	110, 208, 276, 337
AhdI	GACNNNNNGTC	1 cut(s)	141
AjnI	CCWGG	1 cut(s)	120
AleI	CACNNNNGTG	1 cut(s)	81
AluBI	AGCT	3 cut(s)	11, 115, 287
AluI	AGCT	3 cut(s)	11, 115, 287
Alw21I	GWGCWC	1 cut(s)	88
Alw44I	GTGCAC	1 cut(s)	84
AlwI	GGATC	2 cut(s)	237, 347
AoxI	GGCC	1 cut(s)	96
ApaLI	GTGCAC	1 cut(s)	84
ApoI	RAATTY	2 cut(s)	69, 330
AspS9I	GGNCC	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	98
BbrPI	CACGTG	2 cut(s)	81, 91
Bbv12I	GWGCWC	1 cut(s)	88
BccI	CCATC	3 cut(s)	88, 187, 220
BciT130I	CCWGG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	143
BmeRI	GACNNNNNGTC	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	3 cut(s)	72, 115, 243
BsaAI	YACGTR	2 cut(s)	81, 91
BsaJI	CCNNGG	2 cut(s)	99, 146
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	99, 146
BseGI	GGATG	3 cut(s)	10, 130, 286
BseMII	CTCAG	1 cut(s)	12
BseSI	GKGCMC	1 cut(s)	88
BshFI	GGCC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	229, 352
Bsp19I	CCATGG	2 cut(s)	99, 146
BspACI	CCGC	2 cut(s)	61, 303
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	2 cut(s)	237, 347
BspQI	GCTCTTC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	99, 146
BssMI	GATC	2 cut(s)	229, 352
BssT1I	CCWWGG	2 cut(s)	99, 146
Bst2UI	CCWGG	1 cut(s)	122
Bst6I	CTCTTC	2 cut(s)	122, 203
BstBAI	YACGTR	2 cut(s)	81, 91
BstDEI	CTNAG	1 cut(s)	21
BstDSI	CCRYGG	2 cut(s)	99, 146
BstF5I	GGATG	3 cut(s)	10, 130, 286
BstKTI	GATC	2 cut(s)	232, 355
BstMBI	GATC	2 cut(s)	229, 352
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	98
BtgI	CCRYGG	2 cut(s)	99, 146
BtsCI	GGATG	3 cut(s)	10, 130, 286
Cfr13I	GGNCC	1 cut(s)	143
CspCI	CAANNNNNGTGG	2 cut(s)	306, 341
CviAII	CATG	2 cut(s)	100, 147
CviJI	RGCY	7 cut(s)	11, 60, 98, 104, 115, 187, 287
CviKI_1	RGCY	7 cut(s)	11, 60, 98, 104, 115, 187, 287
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	2 cut(s)	231, 354
DpnII	GATC	2 cut(s)	229, 352
DriI	GACNNNNNGTC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	2 cut(s)	122, 203
Eam1105I	GACNNNNNGTC	1 cut(s)	141
EarI	CTCTTC	2 cut(s)	122, 203
Eco130I	CCWWGG	2 cut(s)	99, 146
Eco47I	GGWCC	1 cut(s)	143
Eco72I	CACGTG	2 cut(s)	81, 91
EcoRI	GAATTC	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	2 cut(s)	99, 146
ErhI	CCWWGG	2 cut(s)	99, 146
FaeI	CATG	2 cut(s)	103, 150
FaiI	YATR	9 cut(s)	17, 101, 148, 171, 182, 260, 365, 367, 372
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FatI	CATG	2 cut(s)	99, 146
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	3 cut(s)	17, 137, 293
Fsp4HI	GCNGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	103, 150
HinfI	GANTC	2 cut(s)	47, 213
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	2 cut(s)	55, 68
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	214
HpyCH4IV	ACGT	2 cut(s)	80, 90
HpyCH4V	TGCA	2 cut(s)	86, 128
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	2 cut(s)	80, 90
Hsp92II	CATG	2 cut(s)	103, 150
Kzo9I	GATC	2 cut(s)	229, 352
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	2 cut(s)	107, 134
LweI	GCATC	3 cut(s)	72, 115, 243
MaeII	ACGT	2 cut(s)	80, 90
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	231, 354
MbiI	CCGCTC	1 cut(s)	305
MboI	GATC	2 cut(s)	229, 352
MboII	GAAGA	4 cut(s)	109, 220, 278, 362
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	88
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	4 cut(s)	69, 138, 323, 330
MluNI	TGGCCA	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	1 cut(s)	61
Mox20I	TGGCCA	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	98
MseI	TTAA	2 cut(s)	345, 382
MslI	CAYNNNNRTG	2 cut(s)	81, 375
Msp20I	TGGCCA	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	122
NcoI	CCATGG	2 cut(s)	99, 146
NdeII	GATC	2 cut(s)	229, 352
NlaIII	CATG	2 cut(s)	103, 150
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	133
OliI	CACNNNNGTG	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	213
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	55
PmaCI	CACGTG	2 cut(s)	81, 91
PmlI	CACGTG	2 cut(s)	81, 91
PpsI	GAGTC	1 cut(s)	55
Ppu21I	YACGTR	2 cut(s)	81, 91
Psp6I	CCWGG	1 cut(s)	120
PspCI	CACGTG	2 cut(s)	81, 91
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	352
RseI	CAYNNNNRTG	2 cut(s)	81, 375
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	345, 382
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	2 cut(s)	229, 352
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	5 cut(s)	13, 83, 93, 117, 289
SfaNI	GCATC	3 cut(s)	72, 115, 243
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	2 cut(s)	81, 375
Sse9I	AATT	4 cut(s)	69, 138, 323, 330
SsiI	CCGC	2 cut(s)	61, 303
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	2 cut(s)	99, 146
TaiI	ACGT	2 cut(s)	83, 93
TaqI	TCGA	1 cut(s)	73
TasI	AATT	4 cut(s)	69, 138, 323, 330
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	2 cut(s)	345, 382
Tru9I	TTAA	2 cut(s)	345, 382
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	297
VneI	GTGCAC	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	2 cut(s)	69, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.