FvH4_6g42130

Clathrin coat assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014561
Physical Location & Seq
Reverse (-)
32955827 .. 32958271
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42130.t1

Sequence Viewer

Length: 2415 bp
ATGCCAAGCAAGTTAAAGAAGGCAATCGGGGCAGTGAAAGACCAGACGAGCATAAGCCTAGCCAAGGTCTCCAACGCCTCCACCTCCGCCAACCTCGAAGTCACCATCCTCAAGGCCACCTCCCACGACGTCGTTCCCATCGACGACAAGTACGTCCATGAGATCCTCACCCTCATCTCCTCCTCCAAGTCCAACGCCGCCGCCTGCGCCCAAGCCATCGCCAAACGCATCGGCAAGACTCGCAACTGGATCGTCGCCCTCAAGTCCCTCATGCTCGTCCTCCGTATCTTCCAGGACGGCGACCCCTTCTTCCCCATTGATGTCCTCCACGCCATGAAACGTGGCGCCAAGATCCTCAACCTCTCAAACTTTAAAGACGAATCCACCTCATGTCCCTGGGACTACACCTCCTTCGTCCGTAACTTTGCTCTCTACCTTGACGAGAGGCTCGACTGCTTCCTCACCGGAAAGCTCCAGCGGCGTTTCACCTACCAGCGTGATCATGACTGCATTATCATCAACAACAACCGAAGCCGCCGGCGAGGGAACGAACCGGTGGTTCGTGACATGAAACCGGCAATGTTACTAGACCGCATACAATTCTGGCAGAAACTGCTGGATCGAGCCATTGCCACAATTCCCTCCGGTGCTGCCAAAACGAACCGTTTAATCCTCATTTCCCTCTACGCAATCGTCCAAGAGACGTACGATCTATACAGAGACATTTCCGACGGGCTGGCGCTGCTTTTAGATAGCTTTTTTCATCTCCAATACCAATCATGCCTAAGTGCTTTTCATGCAAGCGTAAAAGCGTCGAAGCAATTCGAAGAGCTTTCAAGTTTTTACGAAACATGCAAGGCGTTAGGGGTTGGGAGGACCTCTGAGTATCCAAGCGTGCAGAAAATCTCTGAGGAGCTGATCGAGACGTTGCAGGAGTTTGTGAAAGACCAAGCTTCGTTTCCAGGTCGATCCCCGCCATGCCATTTGAATCAGAATCGTACAGATAAAGGGACGGTGACCAGCCTTGAACAACAATTTGAGTTTGCTGATTCGGAGCCGCACGAGAGTACTGCATCGGATTTTGGTTCAGCTTGTACGTCGTTATCAGATTTGGCAAGTGTTGGCGGTATAGAAAATGGGGCTAGCCCATCAAGGTCGGTCGAGCAAGATTTCTTAACCTCCGATGAGCAATTGTCCGAGAAGACTCTATCTCCGTTACAGTCACCGTTACCGGAGTTCATGGTTGGTAGTAATGAAACTAATGATAAAGCACCGAGCCAAACTTCGTCGCAGGTTGATCTTTTGGACTTGTTTCAACCGCAACAAACAGATCATGTTCAACAAGCTAATCAAGAAGGTGAAAAACCTCAATGGGAACTTGTTCTATTTGAGTCTGCAAATCAAAATGGTGCAACAGAAACGTCACCAATTACTTCCCCTCCTCCCAACCTGTTTGCTTCTCTTTCTCCTAACATGTCTCCTAATCTGTTGGAGCCGTCGTCCAGCCCGGACTTGGATTATTTCTTTCAGAATTCTTCGACAAGCAATGCATTACATATAAACAATCCATTTCTTCAAGACATTTTACAAGTTGAGGGCTTTGCAATTCCCACCTCTAATGAGACAACTAGTAACGTTGGCCTAGAAAATTTGGACGATTTTTCTTTCCCTTCCACATCTCAGCCAACGGTGCCACCAACATTTTCTTCACAGAACCCAAATGGGGCAGTGGCTCCAATATGTAGTGAGGTAGATACAATAGATAGGACAGTGGTACCAACATTTCGTGCAACAAATCCGAAAGAGACTGAAATTGCACCAACATTTTCAGCTCATAGTGTGGAAGCAGGAAGCTCAATGCCAGCATCTTTTTGTGCGCAGAGTACAAATAATAGCATAACGGCACCAACATTTCAAGCGGAAGTTCCGAGCGATAGGACTTTTGCAGTTTCATTTGGTGAAGAAAAAATGAAAGAGACTGAAGTTGCACCAACATTTTCGGCTCAGAGTGGGGAAGGAACCTCAATGTCTCCATACTTTTGTGCACTTTCAAATAACAGCTTAACGGCACCAACATTTATAGCAGAATTTCCGAAGGATAGAACTTTGGCCCTTTCAATTTGTACAGAAAATTCAGAAGAGAGCACAGTGTCGCACAAATTTGGGGAGCTGGCTCCTAATAACGAGCTCATGGCTGTGCCAACTTTCTCGACGAGTACTAGTGACAACGAGACCCCAAGAATGTTTGGTTCGCCATTTGCTATCCAAAATGATGACCCGTTCGGACCCTTCTCTAGCATGACAAGTACAACTGAACCTTTGTGTAATGGAGCAATGACTCAAGAAGCTGTGTTGCTTCAACAAAGACAATGGTTGGAGCAACAAAACAAGATTATTGCTAAGCATTTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

805

Amino Acids

88.35

Weight (kDa)

4.83

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 32 - 316 3.2e-78 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014561)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05020
fragaria_vesca FvH4_6g42130 FvH4_6g42160 FvH4_6g42170
malus_domestica MD09G1114300.v1.1 MD17G1106000.v1.1
prunus_persica Prupe.3G210200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0158041
rosa_laevigata RLG00000021052
rosa_multiflora Rmu_sc0000419.1_g000017
rosa_roxburghii Rroxscaffold_2G00091720
rosa_rugosa Rorug02G0465400
rosa_samantha Rh2AG531400 Rh2BG545900 Rh2CG515700 Rh2DG554000
rosa_wichuraiana Rw2G043950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AatII GACGTC 1 cut(s) 132
Acc16I TGCGCA 1 cut(s) 1878
Acc36I ACCTGC 1 cut(s) 1282
Acc65I GGTACC 1 cut(s) 1774
AccB1I GGYRCC 5 cut(s) 344, 1690, 1774, 1903, 2068
AclI AACGTT 1 cut(s) 1635
AclWI GGATC 5 cut(s) 157, 257, 346, 627, 963
AcsI RAATTY 5 cut(s) 1531, 1648, 2087, 2131, 2159
AcuI CTGAAG 1 cut(s) 2001
AcyI GRCGYC 2 cut(s) 129, 345
AfiI CCNNNNNNNGG 3 cut(s) 64, 1513, 1723
AflIII ACRYGT 1 cut(s) 1473
AgeI ACCGGT 1 cut(s) 553
AhlI ACTAGT 2 cut(s) 1628, 2219
AjnI CCWGG 3 cut(s) 291, 395, 961
AjuI GAANNNNNNNTTGG 4 cut(s) 942, 974, 1690, 1722
Alw21I GWGCWC 3 cut(s) 2047, 2147, 2190
Alw44I GTGCAC 1 cut(s) 2043
AlwI GGATC 5 cut(s) 157, 257, 346, 627, 963
AlwNI CAGNNNCTG 1 cut(s) 613
AoxI GGCC 3 cut(s) 114, 1639, 2109
ApaLI GTGCAC 1 cut(s) 2043
ApeKI GCWGC 2 cut(s) 650, 742
ApoI RAATTY 5 cut(s) 1531, 1648, 2087, 2131, 2159
AsiGI ACCGGT 1 cut(s) 553
Asp700I GAANNNNTTC 2 cut(s) 821, 1380
Asp718I GGTACC 1 cut(s) 1774
AspLEI GCGC 4 cut(s) 209, 347, 742, 1879
AspS9I GGNCC 3 cut(s) 876, 2110, 2285
AsuC2I CCSGG 1 cut(s) 1508
AsuHPI GGTGA 9 cut(s) 94, 160, 454, 478, 1027, 1215, 1370, 1416, 1970
AsuII TTCGAA 1 cut(s) 825
AsuNHI GCTAGC 1 cut(s) 1142
AvaII GGWCC 2 cut(s) 876, 2285
BaeGI GKGCMC 1 cut(s) 2047
BaeI ACNNNNGTAYC 2 cut(s) 1758, 1791
BanI GGYRCC 5 cut(s) 344, 1690, 1774, 1903, 2068
BanII GRGCYC 1 cut(s) 2190
BauI CACGAG 1 cut(s) 1061
BbsI GAAGAC 1 cut(s) 1208
Bbv12I GWGCWC 3 cut(s) 2047, 2147, 2190
BbvI GCAGC 2 cut(s) 637, 729
BccI CCATC 4 cut(s) 113, 146, 224, 1156
BceAI ACGGC 4 cut(s) 313, 1480, 1917, 2082
BcgI CGANNNNNNTGC 4 cut(s) 232, 266, 1052, 1086
BciT130I CCWGG 3 cut(s) 293, 397, 963
BciVI GTATCC 1 cut(s) 897
BclI TGATCA 1 cut(s) 499
BcnI CCSGG 1 cut(s) 1508
BcuI ACTAGT 2 cut(s) 1628, 2219
BfaI CTAG 7 cut(s) 59, 587, 1143, 1629, 1643, 2220, 2295
BfoI RGCGCY 2 cut(s) 348, 743
BfuAI ACCTGC 1 cut(s) 1282
BfuI GTATCC 1 cut(s) 897
BisI GCNGC 7 cut(s) 198, 201, 479, 535, 651, 743, 1058
BlpI GCTNAGC 1 cut(s) 2400
BlsI GCNGC 7 cut(s) 199, 202, 480, 536, 652, 744, 1059
BmcAI AGTACT 2 cut(s) 1069, 2218
Bme1390I CCNGG 4 cut(s) 293, 397, 963, 1508
Bme18I GGWCC 2 cut(s) 876, 2285
BmgT120I GGNCC 3 cut(s) 876, 2110, 2285
BmrFI CCNGG 4 cut(s) 293, 397, 963, 1508
BmsI GCATC 3 cut(s) 237, 1082, 1874
BmtI GCTAGC 1 cut(s) 1146
BpiI GAAGAC 1 cut(s) 1208
BpmI CTGGAG 1 cut(s) 458
Bpu1102I GCTNAGC 1 cut(s) 2400
Bpu14I TTCGAA 1 cut(s) 825
BpuEI CTTGAG 3 cut(s) 95, 245, 2325
BpuMI CCSGG 1 cut(s) 1508
BsaHI GRCGYC 2 cut(s) 129, 345
BsaI GGTCTC 2 cut(s) 73, 2225
BsaJI CCNNGG 3 cut(s) 63, 395, 396
BsaWI WCCGGW 4 cut(s) 464, 553, 644, 1231
BsaXI ACNNNNNCTCC 8 cut(s) 392, 422, 1195, 1225, 1423, 1453, 1484, 1514
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 1513, 1723
Bse118I RCCGGY 3 cut(s) 537, 553, 574
Bse1I ACTGG 1 cut(s) 251
Bse3DI GCAATG 4 cut(s) 585, 627, 1552, 2340
BseBI CCWGG 3 cut(s) 293, 397, 963
BseDI CCNNGG 3 cut(s) 63, 395, 396
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 3 cut(s) 64, 1513, 1723
BseMI GCAATG 4 cut(s) 585, 627, 1552, 2340
BseMII CTCAG 4 cut(s) 873, 900, 1694, 2018
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 4 cut(s) 169, 172, 926, 1431
BseSI GKGCMC 1 cut(s) 2047
BseXI GCAGC 2 cut(s) 637, 729
BsgI GTGCAG 1 cut(s) 917
Bsh1285I CGRYCG 1 cut(s) 1161
BshFI GGCC 3 cut(s) 116, 1641, 2111
BshNI GGYRCC 5 cut(s) 344, 1690, 1774, 1903, 2068
BshTI ACCGGT 1 cut(s) 553
BsiEI CGRYCG 1 cut(s) 1161
BsiHKAI GWGCWC 3 cut(s) 2047, 2147, 2190
BsiSI CCGG 7 cut(s) 465, 538, 554, 575, 645, 1232, 1508
BsiWI CGTACG 1 cut(s) 705
BslFI GGGAC 4 cut(s) 250, 378, 413, 1024
BslI CCNNNNNNNGG 3 cut(s) 64, 1513, 1723
BsmBI CGTCTC 2 cut(s) 695, 917
BsmFI GGGAC 4 cut(s) 250, 378, 413, 1024
BsnI GGCC 3 cut(s) 116, 1641, 2111
Bso31I GGTCTC 2 cut(s) 73, 2225
Bsp119I TTCGAA 1 cut(s) 825
Bsp1286I GDGCHC 3 cut(s) 2047, 2147, 2190
Bsp1407I TGTACA 1 cut(s) 2123
Bsp1720I GCTNAGC 1 cut(s) 2400
BspANI GGCC 3 cut(s) 116, 1641, 2111
BspCNI CTCAG 4 cut(s) 874, 901, 1693, 2017
BspHI TCATGA 1 cut(s) 502
BspMI ACCTGC 1 cut(s) 1282
BspOI GCTAGC 1 cut(s) 1146
BspPI GGATC 5 cut(s) 157, 257, 346, 627, 963
BspQI GCTCTTC 1 cut(s) 822
BspT104I TTCGAA 1 cut(s) 825
BspT107I GGYRCC 5 cut(s) 344, 1690, 1774, 1903, 2068
BspTNI GGTCTC 2 cut(s) 73, 2225
BsrDI GCAATG 4 cut(s) 585, 627, 1552, 2340
BsrFI RCCGGY 3 cut(s) 537, 553, 574
BsrGI TGTACA 1 cut(s) 2123
BsrI ACTGG 1 cut(s) 251
BssAI RCCGGY 3 cut(s) 537, 553, 574
BssECI CCNNGG 3 cut(s) 63, 395, 396
BssNI GRCGYC 2 cut(s) 129, 345
BssSI CACGAG 1 cut(s) 1061
BssT1I CCWWGG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 1061
Bst2UI CCWGG 3 cut(s) 293, 397, 963
Bst4CI ACNGT 7 cut(s) 665, 1015, 1221, 1227, 1690, 1771, 2149
Bst6I CTCTTC 2 cut(s) 822, 2133
BstACI GRCGYC 2 cut(s) 129, 345
BstAPI GCANNNNNTGC 1 cut(s) 613
BstAUI TGTACA 1 cut(s) 2123
BstBI TTCGAA 1 cut(s) 825
BstC8I GCNNGC 8 cut(s) 205, 539, 738, 802, 896, 1144, 1863, 2172
BstDEI CTNAG 6 cut(s) 785, 882, 909, 1680, 2004, 2400
BstEII GGTNACC 1 cut(s) 1015
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 105
BstH2I RGCGCY 2 cut(s) 348, 743
BstHHI GCGC 4 cut(s) 209, 347, 742, 1879
BstMCI CGRYCG 1 cut(s) 1161
BstMWI GCNNNNNNNGC 8 cut(s) 29, 206, 240, 478, 613, 742, 797, 1690
BstNI CCWGG 3 cut(s) 293, 397, 963
BstNSI RCATGY 2 cut(s) 855, 1477
BstPI GGTNACC 1 cut(s) 1015
BstSCI CCNGG 4 cut(s) 291, 395, 961, 1506
BstSLI GKGCMC 1 cut(s) 2047
BstV1I GCAGC 2 cut(s) 637, 729
BstV2I GAAGAC 1 cut(s) 1208
BstX2I RGATCY 2 cut(s) 162, 351
BstYI RGATCY 2 cut(s) 162, 351
BsuI GTATCC 1 cut(s) 897
BsuRI GGCC 3 cut(s) 116, 1641, 2111
BtgZI GCGATG 1 cut(s) 202
BtsCI GGATG 1 cut(s) 105
BtsI GCAGTG 2 cut(s) 39, 1734
BtsIMutI CAGTG 4 cut(s) 39, 1734, 1776, 2154
BveI ACCTGC 1 cut(s) 1282
Cac8I GCNNGC 8 cut(s) 205, 539, 738, 802, 896, 1144, 1863, 2172
CaiI CAGNNNCTG 1 cut(s) 613
CciI TCATGA 1 cut(s) 502
CfoI GCGC 4 cut(s) 209, 347, 742, 1879
Cfr10I RCCGGY 3 cut(s) 537, 553, 574
Cfr13I GGNCC 3 cut(s) 876, 2110, 2285
CseI GACGC 1 cut(s) 801
CspAI ACCGGT 1 cut(s) 553
DdeI CTNAG 6 cut(s) 785, 882, 909, 1680, 2004, 2400
DinI GGCGCC 1 cut(s) 346
DraI TTTAAA 1 cut(s) 373
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 2 cut(s) 822, 2133
EarI CTCTTC 2 cut(s) 822, 2133
EciI GGCGGA 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 2188
Eco130I CCWWGG 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 2190
Eco31I GGTCTC 2 cut(s) 73, 2225
Eco47I GGWCC 2 cut(s) 876, 2285
Eco53kI GAGCTC 1 cut(s) 2188
Eco57I CTGAAG 1 cut(s) 2001
Eco91I GGTNACC 1 cut(s) 1015
EcoICRI GAGCTC 1 cut(s) 2188
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 876
EcoO65I GGTNACC 1 cut(s) 1015
EcoRI GAATTC 1 cut(s) 1531
EcoRII CCWGG 3 cut(s) 291, 395, 961
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 1552
EcoT38I GRGCYC 1 cut(s) 2190
EgeI GGCGCC 1 cut(s) 346
EheI GGCGCC 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 63
Esp3I CGTCTC 2 cut(s) 695, 917
FaqI GGGAC 4 cut(s) 250, 378, 413, 1024
FauI CCCGC 1 cut(s) 981
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 7 cut(s) 198, 201, 479, 535, 651, 743, 1058
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 2190
Fsp4HI GCNGC 7 cut(s) 198, 201, 479, 535, 651, 743, 1058
FspBI CTAG 7 cut(s) 59, 587, 1143, 1629, 1643, 2220, 2295
FspI TGCGCA 1 cut(s) 1878
GlaI GCGC 4 cut(s) 208, 346, 741, 1878
GluI GCNGC 7 cut(s) 198, 201, 479, 535, 651, 743, 1058
GsuI CTGGAG 1 cut(s) 458
HaeII RGCGCY 2 cut(s) 348, 743
HaeIII GGCC 3 cut(s) 116, 1641, 2111
HapII CCGG 7 cut(s) 465, 538, 554, 575, 645, 1232, 1508
HgaI GACGC 1 cut(s) 801
HhaI GCGC 4 cut(s) 209, 347, 742, 1879
Hin1I GRCGYC 2 cut(s) 129, 345
Hin6I GCGC 4 cut(s) 207, 345, 740, 1877
HinP1I GCGC 4 cut(s) 207, 345, 740, 1877
HindIII AAGCTT 1 cut(s) 951
HinfI GANTC 8 cut(s) 238, 380, 988, 994, 1049, 1204, 1391, 2338
HpaII CCGG 7 cut(s) 465, 538, 554, 575, 645, 1232, 1508
HphI GGTGA 9 cut(s) 94, 160, 454, 478, 1027, 1215, 1370, 1416, 1970
Hpy166II GTNNAC 1 cut(s) 2045
Hpy188III TCNNGA 7 cut(s) 503, 563, 922, 1352, 1577, 2209, 2342
Hpy8I GTNNAC 1 cut(s) 2045
HpyAV CCTTC 8 cut(s) 13, 316, 421, 1349, 1680, 2009, 2089, 2299
HpyCH4III ACNGT 7 cut(s) 665, 1015, 1221, 1227, 1690, 1771, 2149
HpyCH4IV ACGT 8 cut(s) 129, 153, 340, 704, 926, 1097, 1421, 1635
HpyF10VI GCNNNNNNNGC 8 cut(s) 29, 206, 240, 478, 613, 742, 797, 1690
HpyF3I CTNAG 6 cut(s) 785, 882, 909, 1680, 2004, 2400
HpySE526I ACGT 8 cut(s) 129, 153, 340, 704, 926, 1097, 1421, 1635
Hsp92I GRCGYC 2 cut(s) 129, 345
HspAI GCGC 4 cut(s) 207, 345, 740, 1877
KasI GGCGCC 1 cut(s) 344
KpnI GGTACC 1 cut(s) 1778
KroI GCCGGC 1 cut(s) 537
KroNI GCCGGC 1 cut(s) 539
Ksp22I TGATCA 1 cut(s) 499
LguI GCTCTTC 1 cut(s) 822
LmnI GCTCC 9 cut(s) 477, 913, 1054, 1492, 1738, 2167, 2179, 2330, 2377
Lsp1109I GCAGC 2 cut(s) 637, 729
LweI GCATC 3 cut(s) 237, 1082, 1874
MaeI CTAG 7 cut(s) 59, 587, 1143, 1629, 1643, 2220, 2295
MaeII ACGT 8 cut(s) 129, 153, 340, 704, 926, 1097, 1421, 1635
MboII GAAGA 9 cut(s) 280, 301, 839, 1213, 1527, 1565, 1698, 1973, 2150
MfeI CAATTG 1 cut(s) 1190
MflI RGATCY 2 cut(s) 162, 351
MhlI GDGCHC 3 cut(s) 2047, 2147, 2190
Mly113I GGCGCC 1 cut(s) 345
MlyI GAGTC 4 cut(s) 232, 1198, 1400, 2332
MmeI TCCRAC 5 cut(s) 96, 216, 753, 1470, 2355
Mph1103I ATGCAT 1 cut(s) 1552
MreI CGCCGGCG 1 cut(s) 537
MroNI GCCGGC 1 cut(s) 537
MroXI GAANNNNTTC 2 cut(s) 821, 1380
MseI TTAA 5 cut(s) 14, 372, 668, 1175, 2063
MslI CAYNNNNRTG 1 cut(s) 2195
MspA1I CMGCKG 1 cut(s) 478
MspI CCGG 7 cut(s) 465, 538, 554, 575, 645, 1232, 1508
MspR9I CCNGG 4 cut(s) 293, 397, 963, 1508
MunI CAATTG 1 cut(s) 1190
MvaI CCWGG 3 cut(s) 293, 397, 963
MwoI GCNNNNNNNGC 8 cut(s) 29, 206, 240, 478, 613, 742, 797, 1690
NaeI GCCGGC 1 cut(s) 539
NarI GGCGCC 1 cut(s) 345
NciI CCSGG 1 cut(s) 1508
NgoMIV GCCGGC 1 cut(s) 537
NheI GCTAGC 1 cut(s) 1142
NmuCI GTSAC 6 cut(s) 100, 563, 1015, 1221, 1422, 2222
NsbI TGCGCA 1 cut(s) 1878
NsiI ATGCAT 1 cut(s) 1552
NspI RCATGY 2 cut(s) 855, 1477
NspV TTCGAA 1 cut(s) 825
PagI TCATGA 1 cut(s) 502
PasI CCCWGGG 1 cut(s) 396
PciI ACATGT 1 cut(s) 1473
PciSI GCTCTTC 1 cut(s) 822
PcsI WCGNNNNNNNCGW 3 cut(s) 138, 150, 447
PdiI GCCGGC 1 cut(s) 539
PdmI GAANNNNTTC 2 cut(s) 821, 1380
PfeI GAWTC 4 cut(s) 380, 988, 994, 1049
Pfl23II CGTACG 1 cut(s) 705
PfoI TCCNGGA 1 cut(s) 291
PinAI ACCGGT 1 cut(s) 553
PkrI GCNGC 7 cut(s) 199, 202, 480, 536, 652, 744, 1059
PleI GAGTC 4 cut(s) 232, 1198, 1399, 2332
PluTI GGCGCC 1 cut(s) 348
PpsI GAGTC 4 cut(s) 232, 1198, 1399, 2332
PpuMI RGGWCCY 1 cut(s) 876
PscI ACATGT 1 cut(s) 1473
Psp124BI GAGCTC 1 cut(s) 2190
Psp1406I AACGTT 1 cut(s) 1635
Psp5II RGGWCCY 1 cut(s) 876
Psp6I CCWGG 3 cut(s) 291, 395, 961
PspEI GGTNACC 1 cut(s) 1015
PspGI CCWGG 3 cut(s) 291, 395, 961
PspLI CGTACG 1 cut(s) 705
PspPI GGNCC 3 cut(s) 876, 2110, 2285
PspPPI RGGWCCY 1 cut(s) 876
PstNI CAGNNNCTG 1 cut(s) 613
PsuI RGATCY 2 cut(s) 162, 351
RseI CAYNNNNRTG 1 cut(s) 2195
SacI GAGCTC 1 cut(s) 2190
SapI GCTCTTC 1 cut(s) 822
SaqAI TTAA 5 cut(s) 14, 372, 668, 1175, 2063
SatI GCNGC 7 cut(s) 198, 201, 479, 535, 651, 743, 1058
Sau96I GGNCC 3 cut(s) 876, 2110, 2285
ScaI AGTACT 2 cut(s) 1069, 2218
SchI GAGTC 4 cut(s) 232, 1198, 1400, 2332
ScrFI CCNGG 4 cut(s) 293, 397, 963, 1508
SduI GDGCHC 3 cut(s) 2047, 2147, 2190
SfaNI GCATC 3 cut(s) 237, 1082, 1874
SfoI GGCGCC 1 cut(s) 346
SfuI TTCGAA 1 cut(s) 825
SgrAI CRCCGGYG 1 cut(s) 537
SinI GGWCC 2 cut(s) 876, 2285
SmiMI CAYNNNNRTG 1 cut(s) 2195
SmlI CTYRAG 3 cut(s) 110, 260, 2340
SmoI CTYRAG 3 cut(s) 110, 260, 2340
SpeI ACTAGT 2 cut(s) 1628, 2219
SspDI GGCGCC 1 cut(s) 344
SspMI CTAG 7 cut(s) 59, 587, 1143, 1629, 1643, 2220, 2295
SstI GAGCTC 1 cut(s) 2190
StyD4I CCNGG 4 cut(s) 291, 395, 961, 1506
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 7 cut(s) 665, 1015, 1221, 1227, 1690, 1771, 2149
TaiI ACGT 8 cut(s) 132, 156, 343, 707, 929, 1100, 1424, 1638
TaqII GACCGA 1 cut(s) 1147
TatI WGTACW 5 cut(s) 1067, 1883, 2123, 2216, 2306
TauI GCSGC 5 cut(s) 200, 203, 481, 537, 1060
TfiI GAWTC 4 cut(s) 380, 988, 994, 1049
Tru1I TTAA 5 cut(s) 14, 372, 668, 1175, 2063
Tru9I TTAA 5 cut(s) 14, 372, 668, 1175, 2063
TscAI CASTG 4 cut(s) 39, 1734, 1776, 2154
TseFI GTSAC 6 cut(s) 100, 563, 1015, 1221, 1422, 2222
TseI GCWGC 2 cut(s) 650, 742
Tsp45I GTSAC 6 cut(s) 100, 563, 1015, 1221, 1422, 2222
TspDTI ATGAA 8 cut(s) 350, 584, 752, 785, 1228, 1269, 1941, 1985
TspGWI ACGGA 3 cut(s) 272, 407, 1203
TspRI CASTG 4 cut(s) 39, 1734, 1776, 2154
VneI GTGCAC 1 cut(s) 2043
VpaK11BI GGWCC 2 cut(s) 876, 2285
XagI CCTNNNNNAGG 1 cut(s) 62
XapI RAATTY 5 cut(s) 1531, 1648, 2087, 2131, 2159
XceI RCATGY 2 cut(s) 855, 1477
XcmI CCANNNNNNNNNTGG 1 cut(s) 1510
XmnI GAANNNNTTC 2 cut(s) 821, 1380
XspI CTAG 7 cut(s) 59, 587, 1143, 1629, 1643, 2220, 2295
ZraI GACGTC 1 cut(s) 130
ZrmI AGTACT 2 cut(s) 1069, 2218
Zsp2I ATGCAT 1 cut(s) 1552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.